SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    535001 6qdc:A (1.4) BS02 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535002 6qdc:A (1.4) BS03 HXE 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985 MOAD: ic50=0.62uM
    535003 6qdc:A (1.4) BS04 HXE 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985 MOAD: ic50=0.62uM
    535004 6qdd:A (1.65) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535005 6qdd:A (1.65) BS02 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535006 6qdd:A (1.65) BS03 HXW 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535007 6qde:A (1.45) BS01 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535008 6qde:A (1.45) BS02 HWW 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535009 6qde:A (1.45) BS03 HWW 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535010 6qde:A (1.45) BS04 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535011 6qdf:A (1.49) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535012 6qdf:A (1.49) BS02 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535013 6qdf:A (1.49) BS03 HWN 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985 MOAD: ic50=1.2uM
    535014 6qdg:A (1.98) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535015 6qdg:A (1.98) BS02 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535016 6qdg:A (1.98) BS03 HXN 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535017 6qdh:A (1.45) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535018 6qdh:A (1.45) BS02 HXQ 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535019 6qdh:A (1.45) BS03 HZ5 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535020 6qdh:A (1.45) BS04 HZ8 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535021 6qdh:A (1.45) BS05 MG 2.3.1.97 GO:0004379 ... Q4Q5S8 32575985
    535022 6qdi:A (1.13) BS01 CA ? N/A G8M2Z2 31162722
    535023 6qdi:A (1.13) BS02 CA ? N/A G8M2Z2 31162722
    535024 6qdi:A (1.13) BS03 CA ? N/A G8M2Z2 31162722
    535025 6qdi:A (1.13) BS04 CA ? N/A G8M2Z2 31162722
    535026 6qdj:A (1.884) BS01 ADP ? GO:0003774 ... P02566 31636255
    535027 6qdr:A (1.615) BS01 peptide ? GO:0000122 ... P31947 32220335
    535028 6qdr:A (1.615) BS02 CA ? GO:0000122 ... P31947 32220335
    535029 6qds:A (1.72) BS01 peptide ? GO:0000122 ... P31947 32220335
    535030 6qds:A (1.72) BS02 HY5 ? GO:0000122 ... P31947 32220335
    535031 6qdt:A (1.702) BS01 peptide ? GO:0000122 ... P31947 32220335
    535032 6qdt:A (1.702) BS02 CA ? GO:0000122 ... P31947 32220335
    535033 6qdu:A (1.632) BS01 HY5 ? GO:0000122 ... P31947 32220335
    535034 6qdu:A (1.632) BS02 TPO ? GO:0000122 ... P31947 32220335
    535035 6qdv:7 (3.3) BS01 ATP 3.6.4.13 GO:0000184 ... P38919 30705154
    535036 6qdv:A (3.3) BS01 rna ? GO:0000244 ... Q6P2Q9 30705154
    535037 6qdv:A (3.3) BS02 rna ? GO:0000244 ... Q6P2Q9 30705154
    535038 6qdv:A (3.3) BS03 rna ? GO:0000244 ... Q6P2Q9 30705154
    535039 6qdv:A (3.3) BS04 rna ? GO:0000244 ... Q6P2Q9 30705154
    535040 6qdv:A (3.3) BS05 rna ? GO:0000244 ... Q6P2Q9 30705154
    535041 6qdv:A (3.3) BS06 peptide ? GO:0000244 ... Q6P2Q9 30705154
    535042 6qdv:A (3.3) BS07 IHP ? GO:0000244 ... Q6P2Q9 30705154
    535043 6qdv:C (3.3) BS01 rna ? GO:0000398 ... Q15029 30705154
    535044 6qdv:C (3.3) BS02 GTP ? GO:0000398 ... Q15029 30705154
    535045 6qdv:C (3.3) BS03 MG ? GO:0000398 ... Q15029 30705154
    535046 6qdv:D (3.3) BS01 rna ? GO:0003725 ... Q9H875 30705154
    535047 6qdv:D (3.3) BS02 rna ? GO:0003725 ... Q9H875 30705154
    535048 6qdv:G (3.3) BS01 rna ? N/A Q9Y421 30705154
    535049 6qdv:H (3.3) BS01 peptide ? GO:0000398 ... Q9HCG8 30705154
    535050 6qdv:J (3.3) BS01 rna ? GO:0000398 ... O43660 30705154
    535051 6qdv:K (3.3) BS01 rna ? GO:0000398 ... Q13573 30705154
    535052 6qdv:K (3.3) BS02 rna ? GO:0000398 ... Q13573 30705154
    535053 6qdv:L (3.3) BS01 rna ? GO:0000398 ... P41223 30705154
    535054 6qdv:L (3.3) BS02 rna ? GO:0000398 ... P41223 30705154
    535055 6qdv:L (3.3) BS03 ZN ? GO:0000398 ... P41223 30705154
    535056 6qdv:L (3.3) BS04 ZN ? GO:0000398 ... P41223 30705154
    535057 6qdv:L (3.3) BS05 ZN ? GO:0000398 ... P41223 30705154
    535058 6qdv:M (3.3) BS01 rna ? GO:0003676 ... Q9NW64 30705154
    535059 6qdv:M (3.3) BS02 rna ? GO:0003676 ... Q9NW64 30705154
    535060 6qdv:M (3.3) BS03 ZN ? GO:0003676 ... Q9NW64 30705154
    535061 6qdv:M (3.3) BS04 ZN ? GO:0003676 ... Q9NW64 30705154
    535062 6qdv:M (3.3) BS05 ZN ? GO:0003676 ... Q9NW64 30705154
    535063 6qdv:N (3.3) BS01 rna ? N/A Q96DI7 30705154
    535064 6qdv:O (3.3) BS01 rna ? GO:0000077 ... Q99459 30705154
    535065 6qdv:O (3.3) BS02 rna ? GO:0000077 ... Q99459 30705154
    535066 6qdv:O (3.3) BS03 rna ? GO:0000077 ... Q99459 30705154
    535067 6qdv:P (3.3) BS01 rna ? GO:0000398 ... Q9P013 30705154
    535068 6qdv:P (3.3) BS02 rna ? GO:0000398 ... Q9P013 30705154
    535069 6qdv:P (3.3) BS03 rna ? GO:0000398 ... Q9P013 30705154
    535070 6qdv:S (3.3) BS01 rna ? GO:0000245 ... Q9BZJ0 30705154
    535071 6qdv:W (3.3) BS01 rna ? GO:0000398 ... P09661 30705154
    535072 6qdv:Y (3.3) BS01 rna ? GO:0003676 ... P08579 30705154
    535073 6qdv:b (3.3) BS01 rna ? GO:0003723 ... P14678 30705154
    535074 6qdv:c (3.3) BS01 IHP ? GO:0000375 ... O95391 30705154
    535075 6qdv:d (3.3) BS01 rna ? GO:0000387 ... P62318 30705154
    535076 6qdv:e (3.3) BS01 rna ? GO:0000398 ... P62304 30705154
    535077 6qdv:f (3.3) BS01 rna ? GO:0000387 ... P62306 30705154
    535078 6qdv:g (3.3) BS01 rna ? GO:0000245 ... P62308 30705154
    535079 6qdv:h (3.3) BS01 rna ? GO:0000387 ... P62314 30705154
    535080 6qdv:j (3.3) BS01 rna ? GO:0000245 ... P62316 30705154
    535081 6qdv:k (3.3) BS01 rna ? GO:0003723 ... P14678 30705154
    535082 6qdv:l (3.3) BS01 rna ? GO:0000387 ... P62314 30705154
    535083 6qdv:m (3.3) BS01 rna ? GO:0000245 ... P62316 30705154
    535084 6qdv:n (3.3) BS01 rna ? GO:0000387 ... P62318 30705154
    535085 6qdv:o (3.3) BS01 rna ? GO:0000398 ... O60508 30705154
    535086 6qdv:o (3.3) BS02 rna ? GO:0000398 ... O60508 30705154
    535087 6qdv:o (3.3) BS03 rna ? GO:0000398 ... O60508 30705154
    535088 6qdv:p (3.3) BS01 rna ? GO:0000398 ... P62304 30705154
    535089 6qdv:q (3.3) BS01 rna ? GO:0000387 ... P62306 30705154
    535090 6qdv:r (3.3) BS01 rna ? GO:0000245 ... P62308 30705154
    535091 6qdv:y (3.3) BS01 rna ? N/A O95926 30705154
    535092 6qdv:y (3.3) BS02 rna ? N/A O95926 30705154
    535093 6qdw:0 (2.83) BS01 rna ? GO:0000027 ... P0A7M2 33149120
    535094 6qdw:1 (2.83) BS01 rna ? GO:0000027 ... P0A7M6 33149120
    535095 6qdw:2 (2.83) BS01 rna ? GO:0000027 ... P0AG51 33149120
    535096 6qdw:3 (2.83) BS01 rna ? GO:0000027 ... P0A7N4 33149120
    535097 6qdw:4 (2.83) BS01 rna ? GO:0000027 ... P0A7N9 33149120
    535098 6qdw:6 (2.83) BS01 rna ? GO:0002181 ... P0A7P5 33149120
    535099 6qdw:7 (2.83) BS01 rna ? GO:0002181 ... P0A7Q1 33149120
    535100 6qdw:8 (2.83) BS01 rna ? GO:0002181 ... P0A7Q6 33149120
    535101 6qdw:c (2.83) BS01 rna ? GO:0000027 ... P60422 33149120
    535102 6qdw:d (2.83) BS01 rna ? GO:0000027 ... P60438 33149120
    535103 6qdw:e (2.83) BS01 rna ? GO:0001070 ... P60723 33149120
    535104 6qdw:e (2.83) BS02 peptide ? GO:0001070 ... P60723 33149120
    535105 6qdw:f (2.83) BS01 rna ? GO:0000027 ... P62399 33149120
    535106 6qdw:f (2.83) BS02 rna ? GO:0000027 ... P62399 33149120
    535107 6qdw:f (2.83) BS03 rna ? GO:0000027 ... P62399 33149120
    535108 6qdw:g (2.83) BS01 rna ? GO:0000027 ... P0AG55 33149120
    535109 6qdw:h (2.83) BS01 rna ? GO:0002181 ... P0A7R1 33149120
    535110 6qdw:j (2.83) BS01 rna ? GO:0002181 ... P0AA10 33149120
    535111 6qdw:k (2.83) BS01 rna ? GO:0002181 ... P0ADY3 33149120
    535112 6qdw:l (2.83) BS01 rna ? GO:0002181 ... P02413 33149120
    535113 6qdw:m (2.83) BS01 rna ? GO:0000027 ... P0ADY7 33149120
    535114 6qdw:m (2.83) BS02 rna ? GO:0000027 ... P0ADY7 33149120
    535115 6qdw:n (2.83) BS01 rna ? GO:0000027 ... P0AG44 33149120
    535116 6qdw:o (2.83) BS01 rna ? GO:0002181 ... P0C018 33149120
    535117 6qdw:o (2.83) BS02 rna ? GO:0002181 ... P0C018 33149120
    535118 6qdw:p (2.83) BS01 rna ? GO:0000027 ... P0A7K6 33149120
    535119 6qdw:q (2.83) BS01 rna ? GO:0000027 ... P0A7L3 33149120
    535120 6qdw:r (2.83) BS01 rna ? GO:0002181 ... P0AG48 33149120
    535121 6qdw:s (2.83) BS01 rna ? GO:0002181 ... P61175 33149120
    535122 6qdw:s (2.83) BS02 peptide ? GO:0002181 ... P61175 33149120
    535123 6qdw:t (2.83) BS01 rna ? GO:0003735 ... C6EGE8 33149120
    535124 6qdw:u (2.83) BS01 rna ? GO:0000027 ... P60624 33149120
    535125 6qdw:w (2.83) BS01 rna ? GO:0000027 ... P68919 33149120
    535126 6qdw:y (2.83) BS01 rna ? GO:0000027 ... P0A7L8 33149120
    535127 6qdw:y (2.83) BS02 rna ? GO:0000027 ... P0A7L8 33149120
    535128 6qdx:A (2.1) BS01 HY8 2.1.1.266 GO:0003676 ... P37634 30879411 MOAD: Kd=30uM
    535129 6qdx:B (2.1) BS01 HY8 2.1.1.266 GO:0003676 ... P37634 30879411 MOAD: Kd=30uM
    535130 6qdx:C (2.1) BS01 HY8 2.1.1.266 GO:0003676 ... P37634 30879411 MOAD: Kd=30uM
    535131 6qdx:D (2.1) BS01 HY8 2.1.1.266 GO:0003676 ... P37634 30879411 MOAD: Kd=30uM
    535132 6qdy:C (1.416) BS01 NI 3.5.1.5 GO:0005737 ... P41020 30969470
    535133 6qdy:C (1.416) BS02 NI 3.5.1.5 GO:0005737 ... P41020 30969470
    535134 6qdy:C (1.416) BS03 F 3.5.1.5 GO:0005737 ... P41020 30969470
    535135 6qdy:C (1.416) BS04 URE 3.5.1.5 GO:0005737 ... P41020 30969470
    535136 6qdz:A (1.73) BS01 I46 2.7.11.24 GO:0000077 ... Q16539 N/A
    535137 6qdz:A (1.73) BS02 HYK 2.7.11.24 GO:0000077 ... Q16539 N/A
    535138 6qe0:A (1.394) BS01 HZ2 2.1.1.266 GO:0003676 ... P37634 30879411 MOAD: Kd=25uM
    535139 6qe1:A (1.85) BS01 I46 2.7.11.24 GO:0000077 ... Q16539 N/A
    535140 6qe1:A (1.85) BS02 HYW 2.7.11.24 GO:0000077 ... Q16539 N/A
    535141 6qe2:A (1.7461) BS01 GOL N/A N/A N/A 33916727
    535142 6qe2:B (1.7461) BS01 GOL N/A N/A N/A 33916727
    535143 6qe4:A (2.3) BS01 I3C 2.1.-.- GO:0003723 ... Q5T440 30950402
    535144 6qe4:A (2.3) BS02 I3C 2.1.-.- GO:0003723 ... Q5T440 30950402
    535145 6qe4:A (2.3) BS03 I3C 2.1.-.- GO:0003723 ... Q5T440 30950402
    535146 6qe4:A (2.3) BS04 I3C 2.1.-.- GO:0003723 ... Q5T440 30950402
    535147 6qe5:A (1.61) BS01 SAH 2.1.1.266 GO:0003676 ... P37634 30879411 MOAD: Kd=7.5uM
    535148 6qe5:B (1.61) BS01 SAH 2.1.1.266 GO:0003676 ... P37634 30879411 MOAD: Kd=7.5uM
    535149 6qe6:A (2.36) BS01 SAH 2.1.1.217 GO:0008168 ... A0A0C3A3T0 30879411
    535150 6qe6:B (2.36) BS01 SAH 2.1.1.217 GO:0008168 ... A0A0C3A3T0 30879411
    535151 6qe7:A (2.06) BS01 CA ? N/A A3DC75 31162722
    535152 6qe7:A (2.06) BS02 CA ? N/A A3DC75 31162722
    535153 6qe7:B (2.06) BS01 CA ? N/A A3DC75 31162722
    535154 6qe7:B (2.06) BS02 CA ? N/A A3DC75 31162722
    535155 6qe7:C (2.06) BS01 CA ? N/A A3DC75 31162722
    535156 6qe7:C (2.06) BS02 CA ? N/A A3DC75 31162722
    535157 6qe8:A (1.79) BS01 HZB 3.2.1.8 GO:0004553 ... P55329 31263766
    535158 6qe9:B (2.03) BS01 J9H 4.6.1.18 GO:0003676 ... P61823 30691130
    535159 6qea:A (1.96) BS01 J9H 3.2.1.17 GO:0003796 ... P00698 30691130
    535160 6qeb:A (-1.00) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30688395
    535161 6qeb:A (-1.00) BS02 AZM 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30688395 BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    535162 6qec:A (1.9) BS01 dna ? GO:0003677 ... Q9SNB4 32165537
    535163 6qec:A (1.9) BS02 dna ? GO:0003677 ... Q9SNB4 32165537
    535164 6qed:A (1.8) BS01 HZK 3.4.11.18 GO:0006508 ... P50579 30939017 MOAD: ic50=0.015uM
    BindingDB: IC50=15nM, Ki=0.160000nM
    535165 6qed:A (1.8) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535166 6qed:A (1.8) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535167 6qee:A (3.9) BS01 ZQU N/A GO:0005524 ... N/A 30765569
    535168 6qee:A (3.9) BS02 ZQU N/A GO:0005524 ... N/A 30765569
    535169 6qee:A (3.9) BS03 CLR N/A GO:0005524 ... N/A 30765569
    535170 6qee:A (3.9) BS04 CLR N/A GO:0005524 ... N/A 30765569
    535171 6qee:A (3.9) BS05 CLR N/A GO:0005524 ... N/A 30765569
    535172 6qee:A (3.9) BS06 CLR N/A GO:0005524 ... N/A 30765569
    535173 6qef:A (1.79) BS01 HZW 3.4.11.18 GO:0006508 ... P50579 30939017 MOAD: ic50=0.06uM
    BindingDB: IC50=60nM
    535174 6qef:A (1.79) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535175 6qef:A (1.79) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535176 6qeg:A (2.08) BS01 K4K 3.4.11.18 GO:0006508 ... P50579 30939017 MOAD: ic50=0.05uM
    BindingDB: IC50=50nM
    535177 6qeg:A (2.08) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535178 6qeg:A (2.08) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535179 6qeh:A (2.17) BS01 HZQ 3.4.11.18 GO:0006508 ... P50579 30939017 BindingDB: IC50=55nM
    535180 6qeh:A (2.17) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535181 6qeh:A (2.17) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535182 6qei:A (1.8) BS01 HZE 3.4.11.18 GO:0006508 ... P50579 30939017
    535183 6qei:A (1.8) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535184 6qei:A (1.8) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535185 6qej:A (1.62) BS01 HZT 3.4.11.18 GO:0006508 ... P50579 30939017
    535186 6qej:A (1.62) BS02 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535187 6qej:A (1.62) BS03 MN 3.4.11.18 GO:0006508 ... P50579 30939017
    535188 6qel:A (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535189 6qel:A (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535190 6qel:A (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535191 6qel:B (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535192 6qel:B (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535193 6qel:B (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535194 6qel:C (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535195 6qel:C (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535196 6qel:C (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535197 6qel:D (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535198 6qel:D (3.9) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535199 6qel:D (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    535200 6qel:E (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).