SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    537401 6qul:G (3.0) BS01 rna ? GO:0000027 ... P0AG55 30948752
    537402 6qul:H (3.0) BS01 rna ? GO:0002181 ... P0A7R1 30948752
    537403 6qul:K (3.0) BS01 rna ? GO:0002181 ... P0AA10 30948752
    537404 6qul:L (3.0) BS01 rna ? GO:0002181 ... P0ADY3 30948752
    537405 6qul:M (3.0) BS01 rna ? GO:0002181 ... P02413 30948752
    537406 6qul:N (3.0) BS01 rna ? GO:0000027 ... P0ADY7 30948752
    537407 6qul:N (3.0) BS02 rna ? GO:0000027 ... P0ADY7 30948752
    537408 6qul:O (3.0) BS01 rna ? GO:0000027 ... P0AG44 30948752
    537409 6qul:P (3.0) BS01 rna ? GO:0002181 ... P0C018 30948752
    537410 6qul:P (3.0) BS02 rna ? GO:0002181 ... P0C018 30948752
    537411 6qul:Q (3.0) BS01 rna ? GO:0000027 ... P0A7K6 30948752
    537412 6qul:R (3.0) BS01 rna ? GO:0000027 ... P0A7L3 30948752
    537413 6qul:S (3.0) BS01 rna ? GO:0002181 ... P0AG48 30948752
    537414 6qul:T (3.0) BS01 rna ? GO:0002181 ... P61175 30948752
    537415 6qul:U (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 30948752
    537416 6qul:V (3.0) BS01 rna ? GO:0000027 ... P60624 30948752
    537417 6qul:W (3.0) BS01 rna ? GO:0000027 ... P68919 30948752
    537418 6qul:W (3.0) BS02 rna ? GO:0000027 ... P68919 30948752
    537419 6qul:X (3.0) BS01 rna ? GO:0000027 ... P0A7L8 30948752
    537420 6qul:X (3.0) BS02 rna ? GO:0000027 ... P0A7L8 30948752
    537421 6qul:Y (3.0) BS01 rna ? GO:0000027 ... P0A7M2 30948752
    537422 6qul:Z (3.0) BS01 rna ? GO:0000027 ... P0A7M6 30948752
    537423 6qul:a (3.0) BS01 rna ? GO:0000027 ... P0AG51 30948752
    537424 6qul:a (3.0) BS02 rna ? GO:0000027 ... P0AG51 30948752
    537425 6qul:b (3.0) BS01 rna ? GO:0000027 ... P0A7N4 30948752
    537426 6qul:c (3.0) BS01 rna ? GO:0000027 ... P0A7N9 30948752
    537427 6qul:d (3.0) BS01 rna ? GO:0002181 ... P0A7P5 30948752
    537428 6qul:e (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 30948752
    537429 6qul:f (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 30948752
    537430 6qul:f (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 30948752
    537431 6qum:A (3.25) BS01 MG 7.1.2.2 GO:0005515 ... Q56403 31439765
    537432 6qum:A (3.25) BS02 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    537433 6qum:A (3.25) BS03 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    537434 6qun:O (3.0) BS01 NAD 1.2.1.12 GO:0000325 ... P25858 31772010
    537435 6qun:R (3.0) BS01 NAD 1.2.1.12 GO:0000325 ... P25858 31772010
    537436 6quq:O (2.993) BS01 NAD 1.2.1.12 GO:0000325 ... P25858 31772010
    537437 6quq:O (2.993) BS02 GSH 1.2.1.12 GO:0000325 ... P25858 31772010
    537438 6quq:R (2.993) BS01 NAD 1.2.1.12 GO:0000325 ... P25858 31772010
    537439 6quq:R (2.993) BS02 GSH 1.2.1.12 GO:0000325 ... P25858 31772010
    537440 6qus:O (3.7) BS01 GTP 3.6.5.- GO:0000226 ... P68363 31748546
    537441 6qus:S (3.7) BS01 GDP ? GO:0000226 ... P07437 31748546
    537442 6qus:S (3.7) BS02 TA1 ? GO:0000226 ... P07437 31748546
    537443 6qus:U (3.7) BS01 GDP ? GO:0000226 ... P07437 31748546
    537444 6qus:U (3.7) BS02 TA1 ? GO:0000226 ... P07437 31748546
    537445 6qus:X (3.7) BS01 GTP 3.6.5.- GO:0000226 ... P68363 31748546
    537446 6qut:A (1.96) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 31740053
    537447 6qut:A (1.96) BS02 J8N 4.2.1.1 GO:0004089 ... Q16790 31740053 BindingDB: Kd=2.0nM
    537448 6qut:B (1.96) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 31740053
    537449 6qut:B (1.96) BS02 J8N 4.2.1.1 GO:0004089 ... Q16790 31740053 BindingDB: Kd=2.0nM
    537450 6qut:C (1.96) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 31740053
    537451 6qut:C (1.96) BS02 J8N 4.2.1.1 GO:0004089 ... Q16790 31740053 BindingDB: Kd=2.0nM
    537452 6qut:C (1.96) BS03 J8N 4.2.1.1 GO:0004089 ... Q16790 31740053 BindingDB: Kd=2.0nM
    537453 6qut:D (1.96) BS01 J8N 4.2.1.1 GO:0004089 ... Q16790 31740053 BindingDB: Kd=2.0nM
    537454 6qut:D (1.96) BS02 ZN 4.2.1.1 GO:0004089 ... Q16790 31740053
    537455 6qut:D (1.96) BS03 J8N 4.2.1.1 GO:0004089 ... Q16790 31740053 BindingDB: Kd=2.0nM
    537456 6qut:D (1.96) BS04 J8N 4.2.1.1 GO:0004089 ... Q16790 31740053 BindingDB: Kd=2.0nM
    537457 6quu:A (1.477) BS01 MG 3.6.5.2 GO:0003924 ... P01116 31231840
    537458 6quu:B (1.477) BS01 MG 3.6.5.2 GO:0003924 ... P01116 31231840
    537459 6quv:A (1.475) BS01 MG 3.6.5.2 GO:0003924 ... P01116 31231840
    537460 6quv:B (1.475) BS01 JJN 3.6.5.2 GO:0003924 ... P01116 31231840 MOAD: Kd=1mM
    537461 6quv:B (1.475) BS02 MG 3.6.5.2 GO:0003924 ... P01116 31231840
    537462 6quw:A (1.242) BS01 MG 3.6.5.2 GO:0003924 ... P01116 31231840
    537463 6quw:B (1.242) BS01 MG 3.6.5.2 GO:0003924 ... P01116 31231840
    537464 6quw:B (1.242) BS02 JJQ 3.6.5.2 GO:0003924 ... P01116 31231840
    537465 6qux:A (1.62) BS01 MG 3.6.5.2 GO:0003924 ... P01116 31231840
    537466 6qux:B (1.62) BS01 MG 3.6.5.2 GO:0003924 ... P01116 31231840
    537467 6qux:B (1.62) BS02 JJN 3.6.5.2 GO:0003924 ... P01116 31231840 MOAD: Kd=1mM
    537468 6quy:A (3.8) BS01 GTP 3.6.5.- GO:0000226 ... P68363 31748546
    537469 6quy:C (3.8) BS01 GTP 3.6.5.- GO:0000226 ... P68363 31748546
    537470 6quy:G (3.8) BS01 GDP ? GO:0000226 ... P07437 31748546
    537471 6quy:G (3.8) BS02 TA1 ? GO:0000226 ... P07437 31748546
    537472 6quy:H (3.8) BS01 GDP ? GO:0000226 ... P07437 31748546
    537473 6quy:H (3.8) BS02 TA1 ? GO:0000226 ... P07437 31748546
    537474 6quz:A (3.21) BS01 AGS ? GO:0005515 ... Q9WYC3 31113958
    537475 6quz:A (3.21) BS02 MG ? GO:0005515 ... Q9WYC3 31113958
    537476 6quz:A (3.21) BS03 AGS ? GO:0005515 ... Q9WYC3 31113958
    537477 6quz:B (3.21) BS01 AGS ? GO:0005515 ... Q9WYC4 31113958
    537478 6quz:B (3.21) BS02 AGS ? GO:0005515 ... Q9WYC4 31113958
    537479 6quz:B (3.21) BS03 MG ? GO:0005515 ... Q9WYC4 31113958
    537480 6quz:C (3.21) BS01 AGS ? GO:0005515 ... Q9WYC3 31113958
    537481 6quz:C (3.21) BS02 MG ? GO:0005515 ... Q9WYC3 31113958
    537482 6quz:C (3.21) BS03 AGS ? GO:0005515 ... Q9WYC3 31113958
    537483 6quz:D (3.21) BS01 AGS ? GO:0005515 ... Q9WYC4 31113958
    537484 6quz:D (3.21) BS02 AGS ? GO:0005515 ... Q9WYC4 31113958
    537485 6quz:D (3.21) BS03 MG ? GO:0005515 ... Q9WYC4 31113958
    537486 6qv0:A (3.12) BS01 ATP ? GO:0005515 ... Q9WYC3 31113958
    537487 6qv0:A (3.12) BS02 MG ? GO:0005515 ... Q9WYC3 31113958
    537488 6qv0:A (3.12) BS03 ATP ? GO:0005515 ... Q9WYC3 31113958
    537489 6qv0:B (3.12) BS01 ATP ? GO:0005515 ... Q9WYC4 31113958
    537490 6qv0:B (3.12) BS02 ATP ? GO:0005515 ... Q9WYC4 31113958
    537491 6qv0:B (3.12) BS03 MG ? GO:0005515 ... Q9WYC4 31113958
    537492 6qv0:C (3.12) BS01 ATP ? GO:0005515 ... Q9WYC3 31113958
    537493 6qv0:C (3.12) BS02 MG ? GO:0005515 ... Q9WYC3 31113958
    537494 6qv0:C (3.12) BS03 ATP ? GO:0005515 ... Q9WYC3 31113958
    537495 6qv0:D (3.12) BS01 ATP ? GO:0005515 ... Q9WYC4 31113958
    537496 6qv0:D (3.12) BS02 ATP ? GO:0005515 ... Q9WYC4 31113958
    537497 6qv0:D (3.12) BS03 MG ? GO:0005515 ... Q9WYC4 31113958
    537498 6qv1:A (3.48) BS01 AGS ? GO:0005515 ... Q9WYC3 31113958
    537499 6qv1:A (3.48) BS02 MG ? GO:0005515 ... Q9WYC3 31113958
    537500 6qv1:A (3.48) BS03 AGS ? GO:0005515 ... Q9WYC3 31113958
    537501 6qv1:B (3.48) BS01 AGS ? GO:0005515 ... Q9WYC4 31113958
    537502 6qv1:B (3.48) BS02 AGS ? GO:0005515 ... Q9WYC4 31113958
    537503 6qv1:B (3.48) BS03 MG ? GO:0005515 ... Q9WYC4 31113958
    537504 6qv1:C (3.48) BS01 AGS ? GO:0005515 ... Q9WYC3 31113958
    537505 6qv1:C (3.48) BS02 MG ? GO:0005515 ... Q9WYC3 31113958
    537506 6qv1:C (3.48) BS03 AGS ? GO:0005515 ... Q9WYC3 31113958
    537507 6qv1:D (3.48) BS01 AGS ? GO:0005515 ... Q9WYC4 31113958
    537508 6qv1:D (3.48) BS02 AGS ? GO:0005515 ... Q9WYC4 31113958
    537509 6qv1:D (3.48) BS03 MG ? GO:0005515 ... Q9WYC4 31113958
    537510 6qv2:A (4.23) BS01 AGS ? GO:0005515 ... Q9WYC3 31113958
    537511 6qv2:A (4.23) BS02 MG ? GO:0005515 ... Q9WYC3 31113958
    537512 6qv2:A (4.23) BS03 AGS ? GO:0005515 ... Q9WYC3 31113958
    537513 6qv2:B (4.23) BS01 AGS ? GO:0005515 ... Q9WYC4 31113958
    537514 6qv2:B (4.23) BS02 AGS ? GO:0005515 ... Q9WYC4 31113958
    537515 6qv2:B (4.23) BS03 MG ? GO:0005515 ... Q9WYC4 31113958
    537516 6qv2:C (4.23) BS01 AGS ? GO:0005515 ... Q9WYC3 31113958
    537517 6qv2:C (4.23) BS02 MG ? GO:0005515 ... Q9WYC3 31113958
    537518 6qv2:C (4.23) BS03 AGS ? GO:0005515 ... Q9WYC3 31113958
    537519 6qv2:D (4.23) BS01 AGS ? GO:0005515 ... Q9WYC4 31113958
    537520 6qv2:D (4.23) BS02 AGS ? GO:0005515 ... Q9WYC4 31113958
    537521 6qv2:D (4.23) BS03 MG ? GO:0005515 ... Q9WYC4 31113958
    537522 6qv3:A (2.9) BS01 ADP ? GO:0003676 ... G0S0B9 31859026
    537523 6qv3:A (2.9) BS02 ADP ? GO:0003676 ... G0S0B9 31859026
    537524 6qv3:A (2.9) BS03 ADP ? GO:0003676 ... G0S0B9 31859026
    537525 6qv3:A (2.9) BS04 MN ? GO:0003676 ... G0S0B9 31859026
    537526 6qv4:A (2.8) BS01 MN ? GO:0003676 ... G0S0B9 31859026
    537527 6qv4:A (2.8) BS02 MN ? GO:0003676 ... G0S0B9 31859026
    537528 6qv4:A (2.8) BS03 AGS ? GO:0003676 ... G0S0B9 31859026
    537529 6qv4:A (2.8) BS04 AGS ? GO:0003676 ... G0S0B9 31859026
    537530 6qv4:A (2.8) BS05 AGS ? GO:0003676 ... G0S0B9 31859026
    537531 6qv5:A (2.3) BS01 ZN ? GO:0046872 ... B9T8Q5 31133615
    537532 6qv8:A (1.5) BS01 MN 1.15.1.1 GO:0004784 ... Q2G261 32483131
    537533 6qv8:B (1.5) BS01 MN 1.15.1.1 GO:0004784 ... Q2G261 32483131
    537534 6qv9:A (1.8) BS01 MN 1.15.1.1 GO:0004784 ... P0A0J3 32483131
    537535 6qv9:B (1.8) BS01 MN 1.15.1.1 GO:0004784 ... P0A0J3 32483131
    537536 6qva:A (2.05) BS01 9PI ? N/A Q8KE09 31133615 MOAD: ic50~1uM
    537537 6qva:A (2.05) BS02 3PO ? N/A Q8KE09 31133615
    537538 6qva:A (2.05) BS03 PO4 ? N/A Q8KE09 31133615
    537539 6qve:A (3.7) BS01 GTP 3.6.5.- GO:0000226 ... P68363 31748546
    537540 6qve:C (3.7) BS01 GTP 3.6.5.- GO:0000226 ... P68363 31748546
    537541 6qve:G (3.7) BS01 GTP ? GO:0000226 ... P07437 31748546
    537542 6qve:G (3.7) BS02 GDP ? GO:0000226 ... P07437 31748546
    537543 6qve:G (3.7) BS03 TA1 ? GO:0000226 ... P07437 31748546
    537544 6qve:H (3.7) BS01 GDP ? GO:0000226 ... P07437 31748546
    537545 6qve:H (3.7) BS02 TA1 ? GO:0000226 ... P07437 31748546
    537546 6qvg:A (2.32) BS01 GLY 2.1.2.1 GO:0002082 ... P34897 31127856
    537547 6qvg:A (2.32) BS02 DDF 2.1.2.1 GO:0002082 ... P34897 31127856
    537548 6qvg:A (2.32) BS03 PLP 2.1.2.1 GO:0002082 ... P34897 31127856
    537549 6qvg:A (2.32) BS04 PLP 2.1.2.1 GO:0002082 ... P34897 31127856
    537550 6qvg:B (2.32) BS01 PLP 2.1.2.1 GO:0002082 ... P34897 31127856
    537551 6qvg:B (2.32) BS02 DDF 2.1.2.1 GO:0002082 ... P34897 31127856
    537552 6qvg:B (2.32) BS03 PLP 2.1.2.1 GO:0002082 ... P34897 31127856
    537553 6qvh:A (1.28) BS01 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537554 6qvh:A (1.28) BS02 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537555 6qvh:A (1.28) BS03 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537556 6qvh:A (1.28) BS04 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537557 6qvh:A (1.28) BS05 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537558 6qvh:A (1.28) BS06 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537559 6qvh:A (1.28) BS07 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537560 6qvh:A (1.28) BS08 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537561 6qvh:A (1.28) BS09 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537562 6qvh:A (1.28) BS10 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537563 6qvh:A (1.28) BS11 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537564 6qvh:A (1.28) BS12 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537565 6qvh:A (1.28) BS13 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537566 6qvh:A (1.28) BS14 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537567 6qvh:A (1.28) BS15 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537568 6qvh:A (1.28) BS16 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537569 6qvh:A (1.28) BS17 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537570 6qvh:A (1.28) BS18 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537571 6qvh:A (1.28) BS19 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537572 6qvh:A (1.28) BS20 CU1 ? GO:0046872 ... Q9X8F4 31111982
    537573 6qvj:O (3.8) BS01 GTP 3.6.5.- GO:0000226 ... P68363 31748546
    537574 6qvj:O (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 31748546
    537575 6qvj:S (3.8) BS01 GDP ? GO:0000226 ... P07437 31748546
    537576 6qvj:S (3.8) BS02 TA1 ? GO:0000226 ... P07437 31748546
    537577 6qvj:U (3.8) BS01 GDP ? GO:0000226 ... P07437 31748546
    537578 6qvj:U (3.8) BS02 TA1 ? GO:0000226 ... P07437 31748546
    537579 6qvj:X (3.8) BS01 GTP 3.6.5.- GO:0000226 ... P68363 31748546
    537580 6qvj:X (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 31748546
    537581 6qvl:A (2.28) BS01 PLP 2.1.2.1 GO:0002082 ... P34897 31127856
    537582 6qvl:A (2.28) BS02 4DW 2.1.2.1 GO:0002082 ... P34897 31127856
    537583 6qvl:A (2.28) BS03 PLP 2.1.2.1 GO:0002082 ... P34897 31127856
    537584 6qvl:B (2.28) BS01 PLP 2.1.2.1 GO:0002082 ... P34897 31127856
    537585 6qvl:B (2.28) BS02 4DW 2.1.2.1 GO:0002082 ... P34897 31127856
    537586 6qvl:B (2.28) BS03 PLP 2.1.2.1 GO:0002082 ... P34897 31127856
    537587 6qvm:A (2.5) BS01 HEC N/A N/A N/A N/A
    537588 6qvm:A (2.5) BS02 HEC N/A N/A N/A N/A
    537589 6qvm:A (2.5) BS03 HEC N/A N/A N/A N/A
    537590 6qvm:A (2.5) BS04 HEC N/A N/A N/A N/A
    537591 6qvm:A (2.5) BS05 HEC N/A N/A N/A N/A
    537592 6qvm:A (2.5) BS06 HEC N/A N/A N/A N/A
    537593 6qvm:A (2.5) BS07 HEC N/A N/A N/A N/A
    537594 6qvm:A (2.5) BS08 HEC N/A N/A N/A N/A
    537595 6qvm:A (2.5) BS09 HEC N/A N/A N/A N/A
    537596 6qvm:A (2.5) BS10 HEC N/A N/A N/A N/A
    537597 6qvm:A (2.5) BS11 HEC N/A N/A N/A N/A
    537598 6qvm:A (2.5) BS12 CA N/A N/A N/A N/A
    537599 6qvo:A (2.45) BS01 6MA 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 32144205
    537600 6qvo:B (2.45) BS01 6MA 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 32144205

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).