SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    538201 6qzp:LO (2.9) BS01 rna ? GO:0002181 ... P40429 29143818
    538202 6qzp:LP (2.9) BS01 rna ? GO:0003735 ... P18621 29143818
    538203 6qzp:LP (2.9) BS02 rna ? GO:0003735 ... P18621 29143818
    538204 6qzp:LQ (2.9) BS01 rna ? GO:0002181 ... Q07020 29143818
    538205 6qzp:LR (2.9) BS01 rna ? GO:0002181 ... P84098 29143818
    538206 6qzp:LR (2.9) BS02 rna ? GO:0002181 ... P84098 29143818
    538207 6qzp:LS (2.9) BS01 rna ? GO:0002181 ... Q02543 29143818
    538208 6qzp:LS (2.9) BS02 rna ? GO:0002181 ... Q02543 29143818
    538209 6qzp:LS (2.9) BS03 MG ? GO:0002181 ... Q02543 29143818
    538210 6qzp:LT (2.9) BS01 rna ? GO:0002181 ... P46778 29143818
    538211 6qzp:LT (2.9) BS02 rna ? GO:0002181 ... P46778 29143818
    538212 6qzp:LU (2.9) BS01 rna ? GO:0003735 ... P35268 29143818
    538213 6qzp:LV (2.9) BS01 rna ? GO:0000122 ... P62829 29143818
    538214 6qzp:LV (2.9) BS02 MG ? GO:0000122 ... P62829 29143818
    538215 6qzp:LW (2.9) BS01 rna ? GO:0003735 ... P83731 29143818
    538216 6qzp:LW (2.9) BS02 rna ? GO:0003735 ... P83731 29143818
    538217 6qzp:LX (2.9) BS01 rna ? GO:0003735 ... P62750 29143818
    538218 6qzp:LX (2.9) BS02 rna ? GO:0003735 ... P62750 29143818
    538219 6qzp:LY (2.9) BS01 rna ? GO:0002181 ... P61254 29143818
    538220 6qzp:LY (2.9) BS02 rna ? GO:0002181 ... P61254 29143818
    538221 6qzp:LZ (2.9) BS01 rna ? GO:0002181 ... P61353 29143818
    538222 6qzp:La (2.9) BS01 rna ? GO:0002181 ... P46776 29143818
    538223 6qzp:Lb (2.9) BS01 rna ? GO:0003735 ... P47914 29143818
    538224 6qzp:Lc (2.9) BS01 rna ? GO:0003723 ... P62888 29143818
    538225 6qzp:Ld (2.9) BS01 rna ? GO:0003735 ... P62899 29143818
    538226 6qzp:Le (2.9) BS01 rna ? GO:0002181 ... P62910 29143818
    538227 6qzp:Le (2.9) BS02 MG ? GO:0002181 ... P62910 29143818
    538228 6qzp:Le (2.9) BS03 MG ? GO:0002181 ... P62910 29143818
    538229 6qzp:Lf (2.9) BS01 rna ? GO:0000049 ... P18077 29143818
    538230 6qzp:Lf (2.9) BS02 MG ? GO:0000049 ... P18077 29143818
    538231 6qzp:Lg (2.9) BS01 rna ? GO:0002181 ... P49207 29143818
    538232 6qzp:Lh (2.9) BS01 rna ? GO:0000463 ... P42766 29143818
    538233 6qzp:Lh (2.9) BS02 rna ? GO:0000463 ... P42766 29143818
    538234 6qzp:Li (2.9) BS01 rna ? GO:0002181 ... Q9Y3U8 29143818
    538235 6qzp:Lj (2.9) BS01 rna ? GO:0003735 ... P61927 29143818
    538236 6qzp:Lj (2.9) BS02 rna ? GO:0003735 ... P61927 29143818
    538237 6qzp:Lj (2.9) BS03 ZN ? GO:0003735 ... P61927 29143818
    538238 6qzp:Lk (2.9) BS01 rna ? GO:0001501 ... P63173 29143818
    538239 6qzp:Ll (2.9) BS01 rna ? GO:0002181 ... P62891 29143818
    538240 6qzp:Ll (2.9) BS02 rna ? GO:0002181 ... P62891 29143818
    538241 6qzp:Lm (2.9) BS01 rna ? GO:0003735 ... P62987 29143818
    538242 6qzp:Lm (2.9) BS02 ZN ? GO:0003735 ... P62987 29143818
    538243 6qzp:Lo (2.9) BS01 rna ? GO:0002181 ... P83881 29143818
    538244 6qzp:Lo (2.9) BS02 rna ? GO:0002181 ... P83881 29143818
    538245 6qzp:Lp (2.9) BS01 rna ? GO:0002181 ... P61513 29143818
    538246 6qzp:Lp (2.9) BS02 ZN ? GO:0002181 ... P61513 29143818
    538247 6qzp:Lr (2.9) BS01 rna ? GO:0002181 ... P46779 29143818
    538248 6qzp:Lz (2.9) BS01 rna ? GO:0002181 ... P62906 29143818
    538249 6qzp:SA (2.9) BS01 rna ? GO:0003735 ... P08865 29143818
    538250 6qzp:SB (2.9) BS01 rna ? GO:0003735 ... P61247 29143818
    538251 6qzp:SC (2.9) BS01 rna ? GO:0003723 ... P15880 29143818
    538252 6qzp:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 29143818
    538253 6qzp:SE (2.9) BS01 rna ? GO:0002181 ... P62701 29143818
    538254 6qzp:SF (2.9) BS01 rna ? GO:0000028 ... P46782 29143818
    538255 6qzp:SF (2.9) BS02 rna ? GO:0000028 ... P46782 29143818
    538256 6qzp:SF (2.9) BS03 MG ? GO:0000028 ... P46782 29143818
    538257 6qzp:SG (2.9) BS01 rna ? GO:0000082 ... P62753 29143818
    538258 6qzp:SH (2.9) BS01 rna ? GO:0001843 ... P62081 29143818
    538259 6qzp:SI (2.9) BS01 rna ? GO:0000462 ... P62241 29143818
    538260 6qzp:SI (2.9) BS02 rna ? GO:0000462 ... P62241 29143818
    538261 6qzp:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 29143818
    538262 6qzp:SK (2.9) BS01 rna ? N/A P46783 29143818
    538263 6qzp:SL (2.9) BS01 rna ? GO:0002181 ... P62280 29143818
    538264 6qzp:SL (2.9) BS02 rna ? GO:0002181 ... P62280 29143818
    538265 6qzp:SM (2.9) BS01 rna ? GO:0002181 ... P25398 29143818
    538266 6qzp:SN (2.9) BS01 rna ? GO:0002181 ... P62277 29143818
    538267 6qzp:SN (2.9) BS02 rna ? GO:0002181 ... P62277 29143818
    538268 6qzp:SO (2.9) BS01 rna ? GO:0000028 ... P62263 29143818
    538269 6qzp:SP (2.9) BS01 rna ? GO:0003723 ... P62841 29143818
    538270 6qzp:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 29143818
    538271 6qzp:SR (2.9) BS01 rna ? GO:0002181 ... P08708 29143818
    538272 6qzp:SS (2.9) BS01 rna ? GO:0002181 ... P62269 29143818
    538273 6qzp:ST (2.9) BS01 rna ? GO:0000028 ... P39019 29143818
    538274 6qzp:SU (2.9) BS01 rna ? GO:0003723 ... P60866 29143818
    538275 6qzp:SW (2.9) BS01 rna ? GO:0002181 ... P62244 29143818
    538276 6qzp:SX (2.9) BS01 rna ? GO:0002181 ... P62266 29143818
    538277 6qzp:SY (2.9) BS01 rna ? GO:0002181 ... P62847 29143818
    538278 6qzp:SZ (2.9) BS01 rna ? N/A P62851 29143818
    538279 6qzp:Sa (2.9) BS01 rna ? GO:0003735 ... P62854 29143818
    538280 6qzp:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 29143818
    538281 6qzp:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 29143818
    538282 6qzp:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 29143818
    538283 6qzp:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 29143818
    538284 6qzp:Se (2.9) BS01 rna ? GO:0003735 ... P62861 29143818
    538285 6qzp:Sf (2.9) BS01 rna ? GO:0003735 ... P62979 29143818
    538286 6qzp:Sf (2.9) BS02 ZN ? GO:0003735 ... P62979 29143818
    538287 6qzp:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 29143818
    538288 6qzr:A (2.3) BS01 peptide ? GO:0000122 ... P31947 31308176
    538289 6qzr:B (2.3) BS01 peptide ? GO:0000122 ... P31947 31308176
    538290 6qzr:C (2.3) BS01 peptide ? GO:0000122 ... P31947 31308176
    538291 6qzr:D (2.3) BS01 peptide ? GO:0000122 ... P31947 31308176
    538292 6qzr:E (2.3) BS01 peptide ? GO:0000122 ... P31947 31308176
    538293 6qzr:F (2.3) BS01 peptide ? GO:0000122 ... P31947 31308176
    538294 6qzr:G (2.3) BS01 peptide ? GO:0000122 ... P31947 31308176
    538295 6qzr:H (2.3) BS01 peptide ? GO:0000122 ... P31947 31308176
    538296 6qzs:A (1.9) BS01 peptide ? GO:0000122 ... P31947 31308176
    538297 6qzs:B (1.9) BS01 peptide ? GO:0000122 ... P31947 31308176
    538298 6qzv:A (3.0) BS01 peptide 3.4.14.5 GO:0004177 ... Q86TI2 N/A
    538299 6qzv:B (3.0) BS01 peptide 3.4.14.5 GO:0004177 ... Q86TI2 N/A
    538300 6qzv:C (3.0) BS01 peptide 3.4.14.5 GO:0004177 ... Q86TI2 N/A
    538301 6qzv:D (3.0) BS01 peptide 3.4.14.5 GO:0004177 ... Q86TI2 N/A
    538302 6qzw:A (3.2) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    538303 6qzw:B (3.2) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    538304 6qzw:C (3.2) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 N/A
    538305 6qzy:A (1.61) BS01 peptide 2.1.1.- GO:0008168 ... A0A2R2JFI5 32491837
    538306 6qzy:A (1.61) BS02 SAH 2.1.1.- GO:0008168 ... A0A2R2JFI5 32491837
    538307 6qzy:A (1.61) BS03 MG 2.1.1.- GO:0008168 ... A0A2R2JFI5 32491837
    538308 6qzz:A (1.85) BS01 SAH 2.1.1.- GO:0008168 ... A0A2R2JFI5 32491837
    538309 6qzz:B (1.85) BS01 SAH 2.1.1.- GO:0008168 ... A0A2R2JFI5 32491837
    538310 6r00:A (1.74) BS01 peptide 2.1.1.- GO:0008168 ... A0A2R2JFI5 32491837
    538311 6r00:A (1.74) BS02 SAH 2.1.1.- GO:0008168 ... A0A2R2JFI5 32491837
    538312 6r01:A (1.18) BS01 CU1 ? N/A Q9X8F4 31111982
    538313 6r01:A (1.18) BS02 CU1 ? N/A Q9X8F4 31111982
    538314 6r01:A (1.18) BS03 CU1 ? N/A Q9X8F4 31111982
    538315 6r01:A (1.18) BS04 CU1 ? N/A Q9X8F4 31111982
    538316 6r01:A (1.18) BS05 CU1 ? N/A Q9X8F4 31111982
    538317 6r01:A (1.18) BS06 CU1 ? N/A Q9X8F4 31111982
    538318 6r01:A (1.18) BS07 CU1 ? N/A Q9X8F4 31111982
    538319 6r01:A (1.18) BS08 CU1 ? N/A Q9X8F4 31111982
    538320 6r01:A (1.18) BS09 CU1 ? N/A Q9X8F4 31111982
    538321 6r01:A (1.18) BS10 CU1 ? N/A Q9X8F4 31111982
    538322 6r01:A (1.18) BS11 CU1 ? N/A Q9X8F4 31111982
    538323 6r01:A (1.18) BS12 CU1 ? N/A Q9X8F4 31111982
    538324 6r01:A (1.18) BS13 CU1 ? N/A Q9X8F4 31111982
    538325 6r01:A (1.18) BS14 CU1 ? N/A Q9X8F4 31111982
    538326 6r01:A (1.18) BS15 CU1 ? N/A Q9X8F4 31111982
    538327 6r01:A (1.18) BS16 CU1 ? N/A Q9X8F4 31111982
    538328 6r01:A (1.18) BS17 CU1 ? N/A Q9X8F4 31111982
    538329 6r01:A (1.18) BS18 CU1 ? N/A Q9X8F4 31111982
    538330 6r01:A (1.18) BS19 CU1 ? N/A Q9X8F4 31111982
    538331 6r02:A (2.65) BS01 HIS ? GO:0000105 ... Q4FTX3 31251578
    538332 6r02:B (2.65) BS01 HIS ? GO:0000105 ... Q4FTX3 31251578
    538333 6r02:C (2.65) BS01 HIS ? GO:0000105 ... Q4FTX3 31251578
    538334 6r02:D (2.65) BS01 HIS ? GO:0000105 ... Q4FTX3 31251578
    538335 6r02:E (2.65) BS01 PRP 2.4.2.17 GO:0000105 ... Q4FQF7 31251578
    538336 6r02:F (2.65) BS01 PRP 2.4.2.17 GO:0000105 ... Q4FQF7 31251578
    538337 6r02:G (2.65) BS01 PRP 2.4.2.17 GO:0000105 ... Q4FQF7 31251578
    538338 6r02:H (2.65) BS01 PRP 2.4.2.17 GO:0000105 ... Q4FQF7 31251578
    538339 6r05:A (1.57) BS01 JNE ? GO:0004659 ... Q8WS26 N/A
    538340 6r05:A (1.57) BS02 ZN ? GO:0004659 ... Q8WS26 N/A
    538341 6r06:A (1.559) BS01 JMN ? GO:0004659 ... Q8WS26 N/A
    538342 6r06:A (1.559) BS02 JMN ? GO:0004659 ... Q8WS26 N/A
    538343 6r06:A (1.559) BS03 ZN ? GO:0004659 ... Q8WS26 N/A
    538344 6r07:A (1.57) BS01 3N2 ? GO:0004659 ... Q8WS26 N/A
    538345 6r07:A (1.57) BS02 3N2 ? GO:0004659 ... Q8WS26 N/A
    538346 6r07:A (1.57) BS03 ZN ? GO:0004659 ... Q8WS26 N/A
    538347 6r08:A (1.44) BS01 GO1 ? GO:0004659 ... Q8WS26 N/A
    538348 6r09:A (1.28) BS01 JMK ? GO:0004659 ... Q8WS26 N/A
    538349 6r0a:A (1.32) BS01 JMT ? GO:0004659 ... Q8WS26 N/A
    538350 6r0a:A (1.32) BS02 JMT ? GO:0004659 ... Q8WS26 N/A
    538351 6r0a:A (1.32) BS03 ZN ? GO:0004659 ... Q8WS26 N/A
    538352 6r0b:A (1.612) BS01 JMW ? GO:0004659 ... Q8WS26 N/A
    538353 6r0c:A (4.2) BS01 dna ? GO:0000775 ... P84243 31519882
    538354 6r0c:A (4.2) BS02 dna ? GO:0000775 ... P84243 31519882
    538355 6r0c:B (4.2) BS01 dna ? GO:0000781 ... P62805 31519882
    538356 6r0c:C (4.2) BS01 dna ? GO:0000786 ... P0C0S8 31519882
    538357 6r0c:C (4.2) BS02 dna ? GO:0000786 ... P0C0S8 31519882
    538358 6r0c:D (4.2) BS01 dna ? GO:0000786 ... P62807 31519882
    538359 6r0c:E (4.2) BS01 dna ? GO:0000775 ... P84243 31519882
    538360 6r0c:E (4.2) BS02 dna ? GO:0000775 ... P84243 31519882
    538361 6r0c:F (4.2) BS01 dna ? GO:0000781 ... P62805 31519882
    538362 6r0c:G (4.2) BS01 dna ? GO:0000786 ... P0C0S8 31519882
    538363 6r0c:G (4.2) BS02 dna ? GO:0000786 ... P0C0S8 31519882
    538364 6r0c:H (4.2) BS01 dna ? GO:0000786 ... P62807 31519882
    538365 6r0e:AAA (1.91) BS01 peptide ? GO:0006955 ... P01903 32668259
    538366 6r0e:BBB (1.91) BS01 peptide ? GO:0006955 ... P01911 32668259
    538367 6r0e:DDD (1.91) BS01 peptide N/A N/A N/A 32668259
    538368 6r0e:EEE (1.91) BS01 peptide N/A N/A N/A 32668259
    538369 6r0f:A (2.05) BS01 AR6 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13
    N/A Q5Y389 32879358
    538370 6r0f:B (2.05) BS01 AR6 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13
    N/A Q5Y389 32879358
    538371 6r0g:A (1.7) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13
    N/A Q5Y389 32879358
    538372 6r0g:B (1.7) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13
    N/A Q5Y389 32879358
    538373 6r0h:A (2.5) BS01 JN2 2.4.1.1 GO:0000166 ... P00489 30987252 MOAD: Ki=56.1uM
    538374 6r0h:A (2.5) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 30987252
    538375 6r0i:A (2.4) BS01 JNB 2.4.1.1 GO:0000166 ... P00489 30987252 MOAD: Ki=9.7uM
    538376 6r0i:A (2.4) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 30987252
    538377 6r0k:A (1.15) BS01 ZN ? N/A F8W4B7 31414801
    538378 6r0k:A (1.15) BS02 JNN ? N/A F8W4B7 31414801 MOAD: ic50=12nM
    538379 6r0p:A (1.6) BS01 JNT 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13
    N/A Q5Y389 32879358
    538380 6r0p:B (1.6) BS01 JNT 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13
    N/A Q5Y389 32879358
    538381 6r0q:A (1.5) BS01 peptide ? GO:0046872 ... A4TVL0 31251063
    538382 6r0q:A (1.5) BS02 ZN ? GO:0046872 ... A4TVL0 31251063
    538383 6r0q:A (1.5) BS03 JNW ? GO:0046872 ... A4TVL0 31251063
    538384 6r0q:A (1.5) BS04 JNW ? GO:0046872 ... A4TVL0 31251063
    538385 6r0q:B (1.5) BS01 JNW ? GO:0046872 ... A4TVL0 31251063
    538386 6r0q:B (1.5) BS02 ZN ? GO:0046872 ... A4TVL0 31251063
    538387 6r0q:B (1.5) BS03 JNW ? GO:0046872 ... A4TVL0 31251063
    538388 6r0q:C (1.5) BS01 peptide ? GO:0046872 ... A4TVL0 31251063
    538389 6r0q:C (1.5) BS02 ZN ? GO:0046872 ... A4TVL0 31251063
    538390 6r0q:C (1.5) BS03 JNW ? GO:0046872 ... A4TVL0 31251063
    538391 6r0q:C (1.5) BS04 JNW ? GO:0046872 ... A4TVL0 31251063
    538392 6r0q:D (1.5) BS01 JNW ? GO:0046872 ... A4TVL0 31251063
    538393 6r0q:D (1.5) BS02 ZN ? GO:0046872 ... A4TVL0 31251063
    538394 6r0q:D (1.5) BS03 JNW ? GO:0046872 ... A4TVL0 31251063
    538395 6r0r:A (1.45) BS01 JNT 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13
    N/A Q5Y389 32879358
    538396 6r0s:A (1.55) BS01 ZN ? GO:0046872 ... A4TVL0 31251063
    538397 6r0s:A (1.55) BS02 EF2 ? GO:0046872 ... A4TVL0 31251063 BindingDB: Ki=4400nM, IC50=7800nM
    538398 6r0s:B (1.55) BS01 ZN ? GO:0046872 ... A4TVL0 31251063
    538399 6r0s:B (1.55) BS02 JOE ? GO:0046872 ... A4TVL0 31251063
    538400 6r0s:C (1.55) BS01 ZN ? GO:0046872 ... A4TVL0 31251063

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).