SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    539001 6r58:A (1.9) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539002 6r58:A (1.9) BS02 ZN 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539003 6r58:B (1.9) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539004 6r58:C (1.9) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539005 6r58:C (1.9) BS02 ZN 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539006 6r58:D (1.9) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539007 6r58:D (1.9) BS02 ZN 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539008 6r59:A (1.65) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539009 6r59:A (1.65) BS02 ZN 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539010 6r59:B (1.65) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539011 6r59:B (1.65) BS02 ZN 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539012 6r5a:A (1.48) BS01 ZN 3.4.24.89 GO:0008237 ... Q183R7 31182482
    539013 6r5a:B (1.48) BS01 ZN 3.4.24.89 GO:0008237 ... Q183R7 31182482
    539014 6r5b:A (2.06) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539015 6r5b:B (2.06) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539016 6r5c:A (1.881) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539017 6r5c:A (1.881) BS02 ZN 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539018 6r5c:B (1.881) BS01 peptide 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539019 6r5c:B (1.881) BS02 ZN 3.4.24.89 GO:0005576 ... Q183R7 31182482
    539020 6r5d:A (1.95) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 31479243
    539021 6r5d:A (1.95) BS02 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    539022 6r5d:A (1.95) BS03 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    539023 6r5d:A (1.95) BS04 DTP 2.7.7.102 GO:0000287 ... P49642 31479243
    539024 6r5d:E (1.95) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 31479243
    539025 6r5d:E (1.95) BS02 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    539026 6r5d:E (1.95) BS03 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    539027 6r5d:E (1.95) BS04 DTP 2.7.7.102 GO:0000287 ... P49642 31479243
    539028 6r5e:A (1.85) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 31479243
    539029 6r5e:A (1.85) BS02 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    539030 6r5e:A (1.85) BS03 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    539031 6r5e:A (1.85) BS04 JSQ 2.7.7.102 GO:0000287 ... P49642 31479243
    539032 6r5e:E (1.85) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 31479243
    539033 6r5e:E (1.85) BS02 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    539034 6r5e:E (1.85) BS03 MN 2.7.7.102 GO:0000287 ... P49642 31479243
    539035 6r5e:E (1.85) BS04 JSQ 2.7.7.102 GO:0000287 ... P49642 31479243
    539036 6r5f:A (3.25) BS01 JSW 2.7.11.1 GO:0004672 ... Q13546 31013427
    539037 6r5f:B (3.25) BS01 JSW 2.7.11.1 GO:0004672 ... Q13546 31013427
    539038 6r5f:C (3.25) BS01 JSW 2.7.11.1 GO:0004672 ... Q13546 31013427
    539039 6r5f:D (3.25) BS01 JSW 2.7.11.1 GO:0004672 ... Q13546 31013427
    539040 6r5g:A (-1.00) BS01 peptide 3.1.3.48 N/A Q06124 32064351
    539041 6r5i:A (1.8) BS01 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539042 6r5i:B (1.8) BS01 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539043 6r5k:A (4.8) BS01 rna 3.1.13.4 GO:0000288 ... P53010 31104843
    539044 6r5k:A (4.8) BS02 MG 3.1.13.4 GO:0000288 ... P53010 31104843
    539045 6r5k:D (4.8) BS01 rna ? GO:0003676 ... P04147 31104843
    539046 6r5k:F (4.8) BS01 rna ? GO:0003676 ... P04147 31104843
    539047 6r5k:H (4.8) BS01 rna ? GO:0003676 ... P04147 31104843
    539048 6r5l:A (1.884) BS01 peptide ? GO:0000122 ... P31947 32501690
    539049 6r5l:A (1.884) BS02 JT2 ? GO:0000122 ... P31947 32501690
    539050 6r5n:A (2.0) BS01 NOJ 3.2.1.21 GO:0004553 ... Q9I311 31877028 MOAD: Ki=4.4mM
    539051 6r5n:A (2.0) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539052 6r5n:B (2.0) BS01 NOJ 3.2.1.21 GO:0004553 ... Q9I311 31877028 MOAD: Ki=4.4mM
    539053 6r5n:B (2.0) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539054 6r5o:A (2.4) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539055 6r5o:A (2.4) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539056 6r5o:B (2.4) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539057 6r5o:B (2.4) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539058 6r5p:A (2.85) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539059 6r5p:A (2.85) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539060 6r5p:B (2.85) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539061 6r5p:B (2.85) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539062 6r5q:0 (3.0) BS01 rna ? GO:0003735 ... G1SK22 31246176
    539063 6r5q:6 (3.0) BS01 rna ? GO:0001891 ... G1SJB4 31246176
    539064 6r5q:9 (3.0) BS01 rna ? GO:0002181 ... G1U7M4 31246176
    539065 6r5q:A (3.0) BS01 rna ? GO:0002181 ... G1TT27 31246176
    539066 6r5q:A (3.0) BS02 rna ? GO:0002181 ... G1TT27 31246176
    539067 6r5q:AA (3.0) BS01 rna ? GO:0003735 ... G1T8A2 31246176
    539068 6r5q:B (3.0) BS01 rna ? GO:0003723 ... G1TL06 31246176
    539069 6r5q:BB (3.0) BS01 rna ? GO:0003735 ... G1SVB0 31246176
    539070 6r5q:C (3.0) BS01 peptide ? GO:0003735 ... G1SVW5 31246176
    539071 6r5q:C (3.0) BS02 rna ? GO:0003735 ... G1SVW5 31246176
    539072 6r5q:C (3.0) BS03 rna ? GO:0003735 ... G1SVW5 31246176
    539073 6r5q:CC (3.0) BS01 rna ? GO:0003735 ... G1TJW1 31246176
    539074 6r5q:CC (3.0) BS02 rna ? GO:0003735 ... G1TJW1 31246176
    539075 6r5q:D (3.0) BS01 rna ? GO:0000027 ... P19949 31246176
    539076 6r5q:D (3.0) BS02 rna ? GO:0000027 ... P19949 31246176
    539077 6r5q:DD (3.0) BS01 rna ? GO:0003723 ... B7NZS8 31246176
    539078 6r5q:E (3.0) BS01 rna ? GO:0003735 ... G1SKF7 31246176
    539079 6r5q:EE (3.0) BS01 rna ? GO:0003735 ... G1TRM4 31246176
    539080 6r5q:F (3.0) BS01 rna ? GO:0000463 ... G1SV32 31246176
    539081 6r5q:F (3.0) BS02 rna ? GO:0000463 ... G1SV32 31246176
    539082 6r5q:FF (3.0) BS01 rna ? GO:0000028 ... G1TIB4 31246176
    539083 6r5q:G (3.0) BS01 rna ? GO:0003723 ... G1STW0 31246176
    539084 6r5q:G (3.0) BS02 rna ? GO:0003723 ... G1STW0 31246176
    539085 6r5q:GG (3.0) BS01 rna N/A GO:0003723 ... N/A 31246176
    539086 6r5q:H (3.0) BS01 rna ? GO:0002181 ... G1SWI6 31246176
    539087 6r5q:I (3.0) BS01 rna ? GO:0003735 ... B7NZQ2 31246176
    539088 6r5q:I (3.0) BS02 rna ? GO:0003735 ... B7NZQ2 31246176
    539089 6r5q:II (3.0) BS01 rna ? GO:0003676 ... G1TPG3 31246176
    539090 6r5q:J (3.0) BS01 rna ? GO:0003735 ... G1TUB8 31246176
    539091 6r5q:J (3.0) BS02 rna ? GO:0003735 ... G1TUB8 31246176
    539092 6r5q:JJ (3.0) BS01 rna ? GO:0003735 ... G1TZ76 31246176
    539093 6r5q:KK (3.0) BS01 rna ? GO:0003735 ... G1TU13 31246176
    539094 6r5q:L (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539095 6r5q:L (3.0) BS02 rna N/A GO:0003735 ... N/A 31246176
    539096 6r5q:LL (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539097 6r5q:M (3.0) BS01 rna ? GO:0003723 ... G1SZ12 31246176
    539098 6r5q:MM (3.0) BS01 rna ? GO:0003735 ... G1T1F0 31246176
    539099 6r5q:N (3.0) BS01 rna ? GO:0002181 ... G1T0C1 31246176
    539100 6r5q:N (3.0) BS02 rna ? GO:0002181 ... G1T0C1 31246176
    539101 6r5q:NN (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539102 6r5q:O (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539103 6r5q:OO (3.0) BS01 rna ? N/A G1TDB3 31246176
    539104 6r5q:P (3.0) BS01 peptide ? GO:0003735 ... G1SCJ6 31246176
    539105 6r5q:P (3.0) BS02 rna ? GO:0003735 ... G1SCJ6 31246176
    539106 6r5q:P (3.0) BS03 rna ? GO:0003735 ... G1SCJ6 31246176
    539107 6r5q:PP (3.0) BS01 rna ? GO:0000028 ... G1TN62 31246176
    539108 6r5q:Q (3.0) BS01 rna ? GO:0003723 ... G1TX70 31246176
    539109 6r5q:QQ (3.0) BS01 rna ? GO:0003735 ... G1SP51 31246176
    539110 6r5q:R (3.0) BS01 rna N/A GO:0003723 ... N/A 31246176
    539111 6r5q:R (3.0) BS02 rna N/A GO:0003723 ... N/A 31246176
    539112 6r5q:RR (3.0) BS01 rna ? GO:0003735 ... G1SFR8 31246176
    539113 6r5q:S (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539114 6r5q:S (3.0) BS02 rna N/A GO:0003735 ... N/A 31246176
    539115 6r5q:SS (3.0) BS01 rna ? N/A G1TPV3 31246176
    539116 6r5q:T (3.0) BS01 rna ? GO:0003735 ... G1SHQ2 31246176
    539117 6r5q:T (3.0) BS02 rna ? GO:0003735 ... G1SHQ2 31246176
    539118 6r5q:TT (3.0) BS01 rna ? GO:0003735 ... G1TG89 31246176
    539119 6r5q:U (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539120 6r5q:UU (3.0) BS01 rna ? GO:0000462 ... G1SGX4 31246176
    539121 6r5q:V (3.0) BS01 rna ? GO:0003735 ... G1T6D1 31246176
    539122 6r5q:VV (3.0) BS01 rna ? GO:0003735 ... G1SZ47 31246176
    539123 6r5q:W (3.0) BS01 rna ? GO:0003735 ... G1SE28 31246176
    539124 6r5q:WW (3.0) BS01 rna ? GO:0003723 ... G1U0Q2 31246176
    539125 6r5q:X (3.0) BS01 rna ? GO:0003735 ... G1SE76 31246176
    539126 6r5q:X (3.0) BS02 rna ? GO:0003735 ... G1SE76 31246176
    539127 6r5q:Y (3.0) BS01 rna ? GO:0003723 ... G1SQH0 31246176
    539128 6r5q:Y (3.0) BS02 rna ? GO:0003723 ... G1SQH0 31246176
    539129 6r5q:Z (3.0) BS01 rna ? GO:0003735 ... G1TXF6 31246176
    539130 6r5q:a (3.0) BS01 rna ? GO:0003735 ... G1SNY0 31246176
    539131 6r5q:b (3.0) BS01 rna ? GO:0003735 ... G1SGR6 31246176
    539132 6r5q:c (3.0) BS01 rna ? GO:0003723 ... G1TDL2 31246176
    539133 6r5q:d (3.0) BS01 rna ? GO:0003735 ... G1SHG0 31246176
    539134 6r5q:e (3.0) BS01 rna ? GO:0003735 ... G1TUN8 31246176
    539135 6r5q:f (3.0) BS01 rna ? GO:0000049 ... G1SF08 31246176
    539136 6r5q:g (3.0) BS01 rna ? GO:0003735 ... G1TXG5 31246176
    539137 6r5q:g (3.0) BS02 ZN ? GO:0003735 ... G1TXG5 31246176
    539138 6r5q:g (3.0) BS03 MG ? GO:0003735 ... G1TXG5 31246176
    539139 6r5q:h (3.0) BS01 rna ? GO:0000463 ... G1SIT5 31246176
    539140 6r5q:h (3.0) BS02 rna ? GO:0000463 ... G1SIT5 31246176
    539141 6r5q:i (3.0) BS01 rna ? GO:0003735 ... G1TTQ5 31246176
    539142 6r5q:j (3.0) BS01 rna ? GO:0003735 ... U3KPD5 31246176
    539143 6r5q:j (3.0) BS02 rna ? GO:0003735 ... U3KPD5 31246176
    539144 6r5q:j (3.0) BS03 ZN ? GO:0003735 ... U3KPD5 31246176
    539145 6r5q:k (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539146 6r5q:l (3.0) BS01 rna ? GO:0003735 ... G1TTN1 31246176
    539147 6r5q:l (3.0) BS02 rna ? GO:0003735 ... G1TTN1 31246176
    539148 6r5q:m (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539149 6r5q:m (3.0) BS02 ZN N/A GO:0003735 ... N/A 31246176
    539150 6r5q:o (3.0) BS01 rna ? GO:0003735 ... G1T040 31246176
    539151 6r5q:o (3.0) BS02 rna ? GO:0003735 ... G1T040 31246176
    539152 6r5q:o (3.0) BS03 ZN ? GO:0003735 ... G1T040 31246176
    539153 6r5q:p (3.0) BS01 rna ? GO:0003735 ... G1SY53 31246176
    539154 6r5q:p (3.0) BS02 ZN ? GO:0003735 ... G1SY53 31246176
    539155 6r5q:q (3.0) BS01 rna N/A GO:0003735 ... N/A 31246176
    539156 6r5q:r (3.0) BS01 rna ? GO:0003735 ... G1U7L1 31246176
    539157 6r5q:s (3.0) BS01 rna N/A N/A N/A 31246176
    539158 6r5q:t (3.0) BS01 rna ? GO:0003723 ... G1SMR7 31246176
    539159 6r5q:u (3.0) BS01 rna ? GO:0003735 ... G1SS70 31246176
    539160 6r5q:v (3.0) BS01 rna N/A GO:0003723 ... N/A 31246176
    539161 6r5q:w (3.0) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 31246176
    539162 6r5q:x (3.0) BS01 rna ? GO:0003723 ... G1TK17 31246176
    539163 6r5q:y (3.0) BS01 rna ? GO:0003723 ... G1TFM5 31246176
    539164 6r5q:y (3.0) BS02 rna ? GO:0003723 ... G1TFM5 31246176
    539165 6r5q:y (3.0) BS03 MG ? GO:0003723 ... G1TFM5 31246176
    539166 6r5q:z (3.0) BS01 rna ? GO:0003735 ... G1TM55 31246176
    539167 6r5r:A (1.65) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539168 6r5r:A (1.65) BS02 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539169 6r5r:A (1.65) BS03 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539170 6r5r:B (1.65) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539171 6r5r:B (1.65) BS02 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539172 6r5r:B (1.65) BS03 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539173 6r5s:A (2.75) BS01 FE2 ? GO:0006829 ... Q9I174 31318478
    539174 6r5s:B (2.75) BS01 FE2 ? GO:0006829 ... Q9I174 31318478
    539175 6r5t:A (1.6) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539176 6r5t:A (1.6) BS02 GAL 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539177 6r5t:A (1.6) BS03 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539178 6r5t:B (1.6) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539179 6r5t:B (1.6) BS02 GAL 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539180 6r5t:B (1.6) BS03 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539181 6r5u:A (2.15) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539182 6r5u:A (2.15) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539183 6r5u:B (2.15) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539184 6r5u:B (2.15) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539185 6r5v:A (1.8) BS01 XYP 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539186 6r5v:A (1.8) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539187 6r5v:B (1.8) BS01 XYP 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539188 6r5v:B (1.8) BS02 MG 3.2.1.21 GO:0004553 ... Q9I311 31877028
    539189 6r5y:C (2.15) BS01 ZN ? N/A B2J0I0 31613220
    539190 6r61:A (1.81) BS01 JT8 ? GO:0004190 ... J9VS02 N/A
    539191 6r62:A (1.55) BS01 3PY N/A GO:0003824 ... N/A N/A
    539192 6r62:A (1.55) BS02 3PY N/A GO:0003824 ... N/A N/A
    539193 6r62:A (1.55) BS03 MG N/A GO:0003824 ... N/A N/A
    539194 6r63:A (2.894) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31525930
    539195 6r63:A (2.894) BS02 JTB 1.13.11.52 GO:0002376 ... P14902 31525930
    539196 6r63:B (2.894) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31525930
    539197 6r63:B (2.894) BS02 JTB 1.13.11.52 GO:0002376 ... P14902 31525930
    539198 6r63:B (2.894) BS03 JTB 1.13.11.52 GO:0002376 ... P14902 31525930
    539199 6r64:A (2.64) BS01 dna 3.1.21.- N/A P24200 31724709
    539200 6r64:A (2.64) BS02 dna 3.1.21.- N/A P24200 31724709

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).