SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    539601 6r7q:O (3.9) BS01 rna N/A GO:0003735 ... N/A 31246176
    539602 6r7q:OO (3.9) BS01 rna ? N/A G1TDB3 31246176
    539603 6r7q:P (3.9) BS01 peptide ? GO:0003735 ... G1SCJ6 31246176
    539604 6r7q:P (3.9) BS02 rna ? GO:0003735 ... G1SCJ6 31246176
    539605 6r7q:P (3.9) BS03 rna ? GO:0003735 ... G1SCJ6 31246176
    539606 6r7q:PP (3.9) BS01 rna ? GO:0000028 ... G1TN62 31246176
    539607 6r7q:Q (3.9) BS01 rna ? GO:0003723 ... G1TX70 31246176
    539608 6r7q:QQ (3.9) BS01 rna ? GO:0003735 ... G1SP51 31246176
    539609 6r7q:R (3.9) BS01 rna N/A GO:0003723 ... N/A 31246176
    539610 6r7q:R (3.9) BS02 rna N/A GO:0003723 ... N/A 31246176
    539611 6r7q:RR (3.9) BS01 rna ? GO:0003735 ... G1SFR8 31246176
    539612 6r7q:S (3.9) BS01 rna N/A GO:0003735 ... N/A 31246176
    539613 6r7q:S (3.9) BS02 rna N/A GO:0003735 ... N/A 31246176
    539614 6r7q:SS (3.9) BS01 rna ? N/A G1TPV3 31246176
    539615 6r7q:T (3.9) BS01 rna ? GO:0003735 ... G1SHQ2 31246176
    539616 6r7q:T (3.9) BS02 rna ? GO:0003735 ... G1SHQ2 31246176
    539617 6r7q:TT (3.9) BS01 rna ? GO:0003735 ... G1TG89 31246176
    539618 6r7q:U (3.9) BS01 rna N/A GO:0003735 ... N/A 31246176
    539619 6r7q:UU (3.9) BS01 rna ? GO:0000462 ... G1SGX4 31246176
    539620 6r7q:V (3.9) BS01 rna ? GO:0003735 ... G1T6D1 31246176
    539621 6r7q:VV (3.9) BS01 rna ? GO:0003735 ... G1SZ47 31246176
    539622 6r7q:W (3.9) BS01 rna ? GO:0003735 ... G1SE28 31246176
    539623 6r7q:WW (3.9) BS01 rna ? GO:0003723 ... G1U0Q2 31246176
    539624 6r7q:X (3.9) BS01 rna ? GO:0003735 ... G1SE76 31246176
    539625 6r7q:X (3.9) BS02 rna ? GO:0003735 ... G1SE76 31246176
    539626 6r7q:XX (3.9) BS01 rna ? GO:0005048 ... P38377 31246176
    539627 6r7q:XX (3.9) BS02 peptide ? GO:0005048 ... P38377 31246176
    539628 6r7q:Y (3.9) BS01 rna ? GO:0003723 ... G1SQH0 31246176
    539629 6r7q:Y (3.9) BS02 rna ? GO:0003723 ... G1SQH0 31246176
    539630 6r7q:YY (3.9) BS01 peptide ? GO:0005543 ... P60058 31246176
    539631 6r7q:Z (3.9) BS01 rna ? GO:0003735 ... G1TXF6 31246176
    539632 6r7q:a (3.9) BS01 rna ? GO:0003735 ... G1SNY0 31246176
    539633 6r7q:b (3.9) BS01 rna ? GO:0003735 ... G1SGR6 31246176
    539634 6r7q:c (3.9) BS01 rna ? GO:0003723 ... G1TDL2 31246176
    539635 6r7q:d (3.9) BS01 rna ? GO:0003735 ... G1SHG0 31246176
    539636 6r7q:e (3.9) BS01 rna ? GO:0003735 ... G1TUN8 31246176
    539637 6r7q:f (3.9) BS01 rna ? GO:0000049 ... G1SF08 31246176
    539638 6r7q:g (3.9) BS01 rna ? GO:0003735 ... G1TXG5 31246176
    539639 6r7q:g (3.9) BS02 ZN ? GO:0003735 ... G1TXG5 31246176
    539640 6r7q:g (3.9) BS03 MG ? GO:0003735 ... G1TXG5 31246176
    539641 6r7q:h (3.9) BS01 rna ? GO:0000463 ... G1SIT5 31246176
    539642 6r7q:h (3.9) BS02 rna ? GO:0000463 ... G1SIT5 31246176
    539643 6r7q:i (3.9) BS01 rna ? GO:0003735 ... G1TTQ5 31246176
    539644 6r7q:j (3.9) BS01 rna ? GO:0003735 ... U3KPD5 31246176
    539645 6r7q:j (3.9) BS02 rna ? GO:0003735 ... U3KPD5 31246176
    539646 6r7q:j (3.9) BS03 ZN ? GO:0003735 ... U3KPD5 31246176
    539647 6r7q:k (3.9) BS01 rna N/A GO:0003735 ... N/A 31246176
    539648 6r7q:l (3.9) BS01 rna ? GO:0003735 ... G1TTN1 31246176
    539649 6r7q:l (3.9) BS02 rna ? GO:0003735 ... G1TTN1 31246176
    539650 6r7q:m (3.9) BS01 rna N/A GO:0003735 ... N/A 31246176
    539651 6r7q:m (3.9) BS02 ZN N/A GO:0003735 ... N/A 31246176
    539652 6r7q:o (3.9) BS01 rna ? GO:0003735 ... G1T040 31246176
    539653 6r7q:o (3.9) BS02 rna ? GO:0003735 ... G1T040 31246176
    539654 6r7q:o (3.9) BS03 rna ? GO:0003735 ... G1T040 31246176
    539655 6r7q:o (3.9) BS04 ZN ? GO:0003735 ... G1T040 31246176
    539656 6r7q:p (3.9) BS01 rna ? GO:0003735 ... G1SY53 31246176
    539657 6r7q:p (3.9) BS02 ZN ? GO:0003735 ... G1SY53 31246176
    539658 6r7q:q (3.9) BS01 rna N/A GO:0003735 ... N/A 31246176
    539659 6r7q:r (3.9) BS01 rna ? GO:0003735 ... G1U7L1 31246176
    539660 6r7q:s (3.9) BS01 rna N/A N/A N/A 31246176
    539661 6r7q:t (3.9) BS01 rna ? GO:0003723 ... G1SMR7 31246176
    539662 6r7q:u (3.9) BS01 rna ? GO:0003735 ... G1SS70 31246176
    539663 6r7q:u (3.9) BS02 rna ? GO:0003735 ... G1SS70 31246176
    539664 6r7q:v (3.9) BS01 rna N/A GO:0003723 ... N/A 31246176
    539665 6r7q:w (3.9) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 31246176
    539666 6r7q:x (3.9) BS01 rna ? GO:0003723 ... G1TK17 31246176
    539667 6r7q:y (3.9) BS01 rna ? GO:0003723 ... G1TFM5 31246176
    539668 6r7q:y (3.9) BS02 rna ? GO:0003723 ... G1TFM5 31246176
    539669 6r7q:y (3.9) BS03 MG ? GO:0003723 ... G1TFM5 31246176
    539670 6r7q:z (3.9) BS01 rna ? GO:0003735 ... G1TM55 31246176
    539671 6r7r:A (2.8) BS01 DAS ? GO:0005886 ... Q5JID0 30969168
    539672 6r7r:A (2.8) BS02 DMU ? GO:0005886 ... Q5JID0 30969168
    539673 6r7r:B (2.8) BS01 DAS ? GO:0005886 ... Q5JID0 30969168
    539674 6r7r:C (2.8) BS01 DAS ? GO:0005886 ... Q5JID0 30969168
    539675 6r7s:A (2.21) BS01 SAS ? GO:0003677 ... P02768 32162429
    539676 6r7s:A (2.21) BS02 SAS ? GO:0003677 ... P02768 32162429
    539677 6r7s:A (2.21) BS03 SAS ? GO:0003677 ... P02768 32162429
    539678 6r7u:A (1.6) BS01 CA ? GO:0008237 ... G8ULV1 31949901
    539679 6r7u:A (1.6) BS02 CA ? GO:0008237 ... G8ULV1 31949901
    539680 6r7u:A (1.6) BS03 ZN ? GO:0008237 ... G8ULV1 31949901
    539681 6r7u:B (1.6) BS01 CA ? GO:0008237 ... G8ULV1 31949901
    539682 6r7u:B (1.6) BS02 CA ? GO:0008237 ... G8ULV1 31949901
    539683 6r7u:B (1.6) BS03 ZN ? GO:0008237 ... G8ULV1 31949901
    539684 6r7v:A (1.4) BS01 CA ? GO:0008237 ... G8ULV1 31949901
    539685 6r7v:A (1.4) BS02 CA ? GO:0008237 ... G8ULV1 31949901
    539686 6r7v:A (1.4) BS03 ZN ? GO:0008237 ... G8ULV1 31949901
    539687 6r7w:A (1.5) BS01 peptide ? GO:0008237 ... G8ULV1 31949901
    539688 6r7w:A (1.5) BS02 CA ? GO:0008237 ... G8ULV1 31949901
    539689 6r7w:A (1.5) BS03 CA ? GO:0008237 ... G8ULV1 31949901
    539690 6r7w:A (1.5) BS04 ZN ? GO:0008237 ... G8ULV1 31949901
    539691 6r7x:A (3.47) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    539692 6r7x:A (3.47) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    539693 6r7x:A (3.47) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    539694 6r7x:B (3.47) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    539695 6r7x:B (3.47) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    539696 6r7x:B (3.47) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    539697 6r7y:A (4.2) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    539698 6r7y:A (4.2) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    539699 6r7y:A (4.2) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    539700 6r7y:B (4.2) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    539701 6r7y:B (4.2) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    539702 6r7y:B (4.2) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    539703 6r81:A (3.9) BS01 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    539704 6r81:A (3.9) BS02 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    539705 6r81:A (3.9) BS03 MG 7.6.2.- GO:0005524 ... O06967 35080979
    539706 6r81:B (3.9) BS01 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    539707 6r81:B (3.9) BS02 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    539708 6r81:B (3.9) BS03 MG 7.6.2.- GO:0005524 ... O06967 35080979
    539709 6r84:5 (3.6) BS01 rna ? GO:0000448 ... P05740 31189955
    539710 6r84:5 (3.6) BS02 rna ? GO:0000448 ... P05740 31189955
    539711 6r84:7 (3.6) BS01 rna ? GO:0002181 ... P05738 31189955
    539712 6r84:A (3.6) BS01 rna 3.6.5.- GO:0005524 ... P40024 31189955
    539713 6r84:C (3.6) BS01 rna ? GO:0002181 ... P0CX27 31189955
    539714 6r84:D (3.6) BS01 rna ? GO:0002181 ... P0CX25 31189955
    539715 6r84:E (3.6) BS01 rna ? GO:0002181 ... P0CX45 31189955
    539716 6r84:F (3.6) BS01 rna ? GO:0000027 ... P14126 31189955
    539717 6r84:G (3.6) BS01 rna ? GO:0002181 ... P10664 31189955
    539718 6r84:G (3.6) BS02 rna ? GO:0002181 ... P10664 31189955
    539719 6r84:H (3.6) BS01 rna ? GO:0000027 ... P26321 31189955
    539720 6r84:H (3.6) BS02 rna ? GO:0000027 ... P26321 31189955
    539721 6r84:I (3.6) BS01 rna ? GO:0000027 ... Q02326 31189955
    539722 6r84:J (3.6) BS01 rna ? GO:0000463 ... P05737 31189955
    539723 6r84:J (3.6) BS02 rna ? GO:0000463 ... P05737 31189955
    539724 6r84:K (3.6) BS01 rna ? GO:0000470 ... P17076 31189955
    539725 6r84:K (3.6) BS02 rna ? GO:0000470 ... P17076 31189955
    539726 6r84:L (3.6) BS01 rna ? GO:0000055 ... P0CX43 31189955
    539727 6r84:M (3.6) BS01 rna ? GO:0000027 ... Q3E757 31189955
    539728 6r84:M (3.6) BS02 rna ? GO:0000027 ... Q3E757 31189955
    539729 6r84:N (3.6) BS01 rna ? GO:0002181 ... Q12690 31189955
    539730 6r84:N (3.6) BS02 rna ? GO:0002181 ... Q12690 31189955
    539731 6r84:O (3.6) BS01 rna ? GO:0000027 ... P36105 31189955
    539732 6r84:P (3.6) BS01 rna ? GO:0000027 ... P0CX53 31189955
    539733 6r84:Q (3.6) BS01 rna ? GO:0000470 ... P26784 31189955
    539734 6r84:R (3.6) BS01 rna 3.1.-.- N/A Q04311 31189955
    539735 6r84:R (3.6) BS02 rna 3.1.-.- N/A Q04311 31189955
    539736 6r84:S (3.6) BS01 rna ? GO:0002181 ... P0CX49 31189955
    539737 6r84:T (3.6) BS01 rna ? GO:0003723 ... P0CX82 31189955
    539738 6r84:U (3.6) BS01 rna ? GO:0002181 ... P0CX23 31189955
    539739 6r84:U (3.6) BS02 rna ? GO:0002181 ... P0CX23 31189955
    539740 6r84:V (3.6) BS01 rna ? GO:0002181 ... Q02753 31189955
    539741 6r84:V (3.6) BS02 rna ? GO:0002181 ... Q02753 31189955
    539742 6r84:W (3.6) BS01 rna ? GO:0003735 ... P05749 31189955
    539743 6r84:X (3.6) BS01 rna ? GO:0000054 ... Q12522 31189955
    539744 6r84:Y (3.6) BS01 rna ? GO:0003735 ... P04449 31189955
    539745 6r84:Z (3.6) BS01 rna ? GO:0003735 ... P04456 31189955
    539746 6r84:Z (3.6) BS02 rna ? GO:0003735 ... P04456 31189955
    539747 6r84:a (3.6) BS01 rna ? GO:0002181 ... P05743 31189955
    539748 6r84:a (3.6) BS02 rna ? GO:0002181 ... P05743 31189955
    539749 6r84:b (3.6) BS01 rna ? GO:0002181 ... P0C2H6 31189955
    539750 6r84:c (3.6) BS01 rna ? GO:0002181 ... P02406 31189955
    539751 6r84:d (3.6) BS01 rna ? GO:0002181 ... P05747 31189955
    539752 6r84:e (3.6) BS01 rna ? GO:0002181 ... P14120 31189955
    539753 6r84:f (3.6) BS01 rna ? GO:0002181 ... P0C2H8 31189955
    539754 6r84:g (3.6) BS01 rna ? GO:0002181 ... P38061 31189955
    539755 6r84:h (3.6) BS01 rna ? GO:0000027 ... P05744 31189955
    539756 6r84:i (3.6) BS01 rna ? GO:0002181 ... P87262 31189955
    539757 6r84:j (3.6) BS01 rna ? GO:0000463 ... P0CX84 31189955
    539758 6r84:j (3.6) BS02 rna ? GO:0000463 ... P0CX84 31189955
    539759 6r84:k (3.6) BS01 rna ? GO:0002181 ... P05745 31189955
    539760 6r84:l (3.6) BS01 rna ? GO:0000448 ... P49166 31189955
    539761 6r84:l (3.6) BS02 rna ? GO:0000448 ... P49166 31189955
    539762 6r84:m (3.6) BS01 rna ? GO:0002181 ... P49167 31189955
    539763 6r84:n (3.6) BS01 rna ? GO:0002181 ... P04650 31189955
    539764 6r84:n (3.6) BS02 rna ? GO:0002181 ... P04650 31189955
    539765 6r84:o (3.6) BS01 rna ? GO:0003735 ... P0CH08 31189955
    539766 6r84:p (3.6) BS01 rna ? GO:0002181 ... P05748 31189955
    539767 6r84:p (3.6) BS02 rna ? GO:0002181 ... P05748 31189955
    539768 6r84:r (3.6) BS01 rna ? N/A P05317 31189955
    539769 6r84:s (3.6) BS01 rna ? GO:0000027 ... P41805 31189955
    539770 6r84:s (3.6) BS02 rna ? GO:0000027 ... P41805 31189955
    539771 6r84:s (3.6) BS03 rna ? GO:0000027 ... P41805 31189955
    539772 6r84:x (3.6) BS01 rna ? GO:0002181 ... P0CX41 31189955
    539773 6r85:A (2.0) BS01 GLU ? GO:0015276 ... Q9C8E7 31871183
    539774 6r85:B (2.0) BS01 GLU ? GO:0015276 ... Q9C8E7 31871183
    539775 6r86:5 (3.4) BS01 rna ? GO:0000448 ... P05740 31189955
    539776 6r86:5 (3.4) BS02 rna ? GO:0000448 ... P05740 31189955
    539777 6r86:7 (3.4) BS01 rna ? GO:0002181 ... P05738 31189955
    539778 6r86:C (3.4) BS01 rna ? GO:0002181 ... P0CX27 31189955
    539779 6r86:D (3.4) BS01 rna ? GO:0002181 ... P0CX25 31189955
    539780 6r86:E (3.4) BS01 rna ? GO:0002181 ... P0CX45 31189955
    539781 6r86:F (3.4) BS01 rna ? GO:0000027 ... P14126 31189955
    539782 6r86:G (3.4) BS01 rna ? GO:0002181 ... P10664 31189955
    539783 6r86:G (3.4) BS02 rna ? GO:0002181 ... P10664 31189955
    539784 6r86:H (3.4) BS01 rna ? GO:0000027 ... P26321 31189955
    539785 6r86:H (3.4) BS02 rna ? GO:0000027 ... P26321 31189955
    539786 6r86:I (3.4) BS01 rna ? GO:0000027 ... Q02326 31189955
    539787 6r86:J (3.4) BS01 rna ? GO:0000463 ... P05737 31189955
    539788 6r86:J (3.4) BS02 rna ? GO:0000463 ... P05737 31189955
    539789 6r86:K (3.4) BS01 rna ? GO:0000470 ... P17076 31189955
    539790 6r86:K (3.4) BS02 rna ? GO:0000470 ... P17076 31189955
    539791 6r86:L (3.4) BS01 rna ? GO:0000055 ... P0CX43 31189955
    539792 6r86:M (3.4) BS01 rna ? GO:0000027 ... Q3E757 31189955
    539793 6r86:M (3.4) BS02 rna ? GO:0000027 ... Q3E757 31189955
    539794 6r86:N (3.4) BS01 rna ? GO:0002181 ... Q12690 31189955
    539795 6r86:N (3.4) BS02 rna ? GO:0002181 ... Q12690 31189955
    539796 6r86:O (3.4) BS01 rna ? GO:0000027 ... P36105 31189955
    539797 6r86:P (3.4) BS01 rna ? GO:0000027 ... P0CX53 31189955
    539798 6r86:Q (3.4) BS01 rna ? GO:0000470 ... P26784 31189955
    539799 6r86:R (3.4) BS01 rna 3.1.-.- N/A Q04311 31189955
    539800 6r86:R (3.4) BS02 ZN 3.1.-.- N/A Q04311 31189955

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).