SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 1bos:P (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5202 1bos:P (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5203 1bos:P (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5204 1bos:Q (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5205 1bos:Q (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5206 1bos:Q (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5207 1bos:Q (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5208 1bos:Q (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5209 1bos:Q (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    5210 1bos:R (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5211 1bos:R (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5212 1bos:R (2.8) BS03 GAL ? GO:0005576 ... P69179 9485303
    5213 1bos:S (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5214 1bos:S (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5215 1bos:S (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5216 1bos:S (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5217 1bos:S (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5218 1bos:S (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    5219 1bos:T (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5220 1bos:T (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5221 1bos:T (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5222 1bos:T (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5223 1bos:T (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5224 1bot:O (3.05) BS01 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9843423
    5225 1bot:Z (3.05) BS01 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9843423
    5226 1bou:B (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    5227 1bou:D (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    5228 1bow:A (2.7) BS01 MN ? N/A P39075 10025401
    5229 1boz:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9719595
    5230 1boz:A (2.1) BS02 PRD 1.5.1.3 GO:0000900 ... P00374 9719595 MOAD: ic50=8500nM
    BindingDB: IC50=28nM
    5231 1bp0:A (2.4) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 10653645 MOAD: Kd=4uM
    5232 1bp2:A (1.7) BS01 CA 3.1.1.4 GO:0002227 ... P00593 7265241
    5233 1bp3:A (2.9) BS01 ZN ? GO:0002092 ... P01241 7984244
    5234 1bp3:B (2.9) BS01 ZN ? GO:0004896 ... P16471 7984244
    5235 1bp4:A (2.2) BS01 ALD 3.4.22.2 GO:0006508 ... P00784 9804696
    5236 1bp6:A (2.4) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 10653645
    5237 1bp7:A (3.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 9809068
    5238 1bp7:A (3.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 9809068
    5239 1bp7:B (3.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 9809068
    5240 1bp7:B (3.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 9809068
    5241 1bp7:C (3.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 9809068
    5242 1bp7:C (3.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 9809068
    5243 1bp7:D (3.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 9809068
    5244 1bp7:D (3.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 9809068
    5245 1bpd:A (3.6) BS01 PO4 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06766 7516581
    5246 1bpe:A (2.9) BS01 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06766 7516581
    5247 1bph:B (2.0) BS01 peptide ? GO:0005179 ... P01317 1477273
    5248 1bph:B (2.0) BS02 DCE ? GO:0005179 ... P01317 1477273
    5249 1bpi:A (1.09) BS01 PO4 ? GO:0004867 ... P00974 15299722
    5250 1bpj:A (2.4) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 10653645
    5251 1bpm:A (2.9) BS01 MG 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    5252 1bpm:A (2.9) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    5253 1bpn:A (2.9) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    5254 1bpn:A (2.9) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    5255 1bpq:A (1.8) BS01 CA 3.1.1.4 GO:0002227 ... P00593 1751497
    5256 1bpw:A (2.8) BS01 NAD 1.2.1.3
    1.2.1.47
    GO:0004029 ... P56533 9792097
    5257 1bpw:B (2.8) BS01 NAD 1.2.1.3
    1.2.1.47
    GO:0004029 ... P56533 9792097
    5258 1bpw:C (2.8) BS01 NAD 1.2.1.3
    1.2.1.47
    GO:0004029 ... P56533 9792097
    5259 1bpw:D (2.8) BS01 NAD 1.2.1.3
    1.2.1.47
    GO:0004029 ... P56533 9792097
    5260 1bpx:A (2.4) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5261 1bpx:A (2.4) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5262 1bpx:A (2.4) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5263 1bpy:A (2.2) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5264 1bpy:A (2.2) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5265 1bpy:A (2.2) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5266 1bpy:A (2.2) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5267 1bpy:A (2.2) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5268 1bpy:A (2.2) BS06 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5269 1bpz:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5270 1bpz:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5271 1bpz:A (2.6) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 9287163
    5272 1bq1:A (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    5273 1bq1:A (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    5274 1bq1:B (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    5275 1bq1:B (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    5276 1bq3:A (2.7) BS01 IHP 5.4.2.11 GO:0003824 ... P00950 10369755
    5277 1bq3:D (2.7) BS01 IHP 5.4.2.11 GO:0003824 ... P00950 10369755
    5278 1bq4:A (2.5) BS01 BHC 5.4.2.11 GO:0003824 ... P00950 10369755 MOAD: Ki=6uM
    5279 1bq5:A (2.05) BS01 CU 1.7.2.1 GO:0005507 ... O68601 9792907
    5280 1bq5:A (2.05) BS02 CU 1.7.2.1 GO:0005507 ... O68601 9792907
    5281 1bq6:A (1.56) BS01 COA 2.3.1.74 GO:0009058 ... P30074 10426957
    5282 1bq8:A (1.1) BS01 FE ? GO:0005506 ... P24297 N/A
    5283 1bq9:A (1.2) BS01 FE ? GO:0005506 ... P24297 N/A
    5284 1bqb:A (1.72) BS01 ZN 3.4.24.29 GO:0004222 ... P81177 9753696
    5285 1bqb:A (1.72) BS02 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    5286 1bqb:A (1.72) BS03 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    5287 1bqb:A (1.72) BS04 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    5288 1bqe:A (2.45) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 11152461
    5289 1bqh:A (2.8) BS01 peptide ? N/A P01901 9806638
    5290 1bqh:D (2.8) BS01 peptide ? N/A P01901 9806638
    5291 1bqi:A (2.5) BS01 SBA 3.4.22.2 GO:0006508 ... P00784 9804696
    5292 1bqk:A (1.35) BS01 CU ? GO:0005507 ... P19567 10364229
    5293 1bqm:A (3.1) BS01 HBY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 9813120
    5294 1bqn:A (3.3) BS01 HBY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 9813120
    5295 1bqo:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    5296 1bqo:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    5297 1bqo:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    5298 1bqo:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    5299 1bqo:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    5300 1bqo:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    5301 1bqo:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    5302 1bqo:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    5303 1bqo:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    5304 1bqo:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    5305 1bqo:B (2.3) BS06 N25 3.4.24.17 GO:0004222 ... P08254 9733482 MOAD: ic50=18.4nM
    BindingDB: IC50=18nM, Ki=18nM
    5306 1bqp:A (2.1) BS01 CA ? GO:0030246 ... P02867 N/A
    5307 1bqp:A (2.1) BS02 MN ? GO:0030246 ... P02867 N/A
    5308 1bqp:A (2.1) BS03 MAN ? GO:0030246 ... P02867 N/A
    5309 1bqp:A (2.1) BS04 BMA ? GO:0030246 ... P02867 N/A
    5310 1bqp:B (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    5311 1bqp:B (2.1) BS02 BMA ? GO:0030246 ... P02867 N/A
    5312 1bqp:C (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    5313 1bqp:C (2.1) BS02 CA ? GO:0030246 ... P02867 N/A
    5314 1bqp:C (2.1) BS03 BMA ? GO:0030246 ... P02867 N/A
    5315 1bqp:C (2.1) BS04 MN ? GO:0030246 ... P02867 N/A
    5316 1bqp:D (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    5317 1bqp:D (2.1) BS02 BMA ? GO:0030246 ... P02867 N/A
    5318 1bqq:M (2.75) BS01 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    5319 1bqq:M (2.75) BS02 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    5320 1bqq:M (2.75) BS03 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    5321 1bqq:M (2.75) BS04 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    5322 1bqr:A (1.6) BS01 CU ? GO:0005507 ... P19567 10364229
    5323 1bqx:A (-1.00) BS01 SF4 ? GO:0009055 ... Q45560 9874217
    5324 1bqx:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9874217
    5325 1bqy:A (2.5) BS01 0GJ 3.4.21.- GO:0004252 ... Q91516 9753698
    5326 1bqy:B (2.5) BS01 0GJ 3.4.21.- GO:0004252 ... Q91516 9753698
    5327 1br1:A (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5328 1br1:A (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5329 1br1:A (3.5) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5330 1br1:C (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5331 1br1:C (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5332 1br1:C (3.5) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5333 1br1:E (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5334 1br1:E (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5335 1br1:E (3.5) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5336 1br1:G (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5337 1br1:G (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5338 1br1:G (3.5) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5339 1br2:A (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5340 1br2:A (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5341 1br2:A (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5342 1br2:B (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5343 1br2:B (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5344 1br2:B (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5345 1br2:C (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5346 1br2:C (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5347 1br2:C (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5348 1br2:D (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5349 1br2:D (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5350 1br2:D (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5351 1br2:E (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5352 1br2:E (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5353 1br2:E (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5354 1br2:F (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5355 1br2:F (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5356 1br2:F (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5357 1br4:A (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5358 1br4:A (3.62) BS02 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5359 1br4:A (3.62) BS03 BEF 3.6.1.32 GO:0003774 ... P10587 9741621
    5360 1br4:C (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5361 1br4:C (3.62) BS02 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5362 1br4:C (3.62) BS03 BEF 3.6.1.32 GO:0003774 ... P10587 9741621
    5363 1br4:E (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5364 1br4:E (3.62) BS02 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5365 1br4:E (3.62) BS03 BEF 3.6.1.32 GO:0003774 ... P10587 9741621
    5366 1br4:G (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    5367 1br4:G (3.62) BS02 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    5368 1br4:G (3.62) BS03 BEF 3.6.1.32 GO:0003774 ... P10587 9741621
    5369 1br5:A (2.5) BS01 NEO 3.2.2.22 GO:0017148 ... P02879 9086280 MOAD: Ki>2mM
    5370 1br6:A (2.3) BS01 PT1 3.2.2.22 GO:0017148 ... P02879 9086280 MOAD: Ki=0.6mM
    5371 1br8:I (2.9) BS01 peptide ? GO:0002020 ... P01008 9761669
    5372 1bra:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8478942
    5373 1bra:A (2.2) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 8478942 MOAD: Ki=15000uM
    5374 1brd:A (3.5) BS01 RET ? GO:0005216 ... P02945 2359127
    5375 1brf:A (0.95) BS01 FE ? GO:0005506 ... P24297 N/A
    5376 1brg:C (2.2) BS01 ZN 3.1.27.- GO:0003723 ... P00648 15299323
    5377 1brh:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    5378 1brj:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    5379 1brk:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    5380 1brn:L (1.76) BS01 dna 3.1.27.- GO:0003723 ... P00648 8110767
    5381 1brn:M (1.76) BS01 dna 3.1.27.- GO:0003723 ... P00648 8110767
    5382 1brp:A (2.5) BS01 RTL ? GO:0001523 ... P02753 8464067
    5383 1brr:A (2.9) BS01 MAN ? GO:0005216 ... P02945 9751724
    5384 1brr:A (2.9) BS02 RET ? GO:0005216 ... P02945 9751724
    5385 1brr:A (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    5386 1brr:A (2.9) BS04 ARC ? GO:0005216 ... P02945 9751724
    5387 1brr:A (2.9) BS05 ARC ? GO:0005216 ... P02945 9751724
    5388 1brr:A (2.9) BS06 ARC ? GO:0005216 ... P02945 9751724
    5389 1brr:A (2.9) BS07 ARC ? GO:0005216 ... P02945 9751724
    5390 1brr:B (2.9) BS01 GLC ? GO:0005216 ... P02945 9751724
    5391 1brr:B (2.9) BS02 RET ? GO:0005216 ... P02945 9751724
    5392 1brr:B (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    5393 1brr:B (2.9) BS04 ARC ? GO:0005216 ... P02945 9751724
    5394 1brr:B (2.9) BS05 ARC ? GO:0005216 ... P02945 9751724
    5395 1brr:B (2.9) BS06 ARC ? GO:0005216 ... P02945 9751724
    5396 1brr:B (2.9) BS07 ARC ? GO:0005216 ... P02945 9751724
    5397 1brr:C (2.9) BS01 MAN ? GO:0005216 ... P02945 9751724
    5398 1brr:C (2.9) BS02 ARC ? GO:0005216 ... P02945 9751724
    5399 1brr:C (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    5400 1brr:C (2.9) BS04 RET ? GO:0005216 ... P02945 9751724

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).