SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    544201 6ryr:E (3.1) BS02 dna ? GO:0000786 ... P84233 32543371
    544202 6ryr:F (3.1) BS01 dna ? GO:0000786 ... P62799 32543371
    544203 6ryr:F (3.1) BS02 dna ? GO:0000786 ... P62799 32543371
    544204 6ryr:G (3.1) BS01 dna ? GO:0000786 ... P06897 32543371
    544205 6ryr:G (3.1) BS02 dna ? GO:0000786 ... P06897 32543371
    544206 6ryr:H (3.1) BS01 dna ? GO:0000786 ... P02281 32543371
    544207 6ryr:H (3.1) BS02 dna ? GO:0000786 ... P02281 32543371
    544208 6ryr:W (3.1) BS01 dna 3.6.4.12 GO:0003677 ... Q14839 32543371
    544209 6ryr:W (3.1) BS02 dna 3.6.4.12 GO:0003677 ... Q14839 32543371
    544210 6ryr:W (3.1) BS03 ANP 3.6.4.12 GO:0003677 ... Q14839 32543371
    544211 6ryr:W (3.1) BS04 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    544212 6ryr:W (3.1) BS05 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    544213 6ryu:A (4.0) BS01 dna ? GO:0000786 ... P84233 32543371
    544214 6ryu:A (4.0) BS02 dna ? GO:0000786 ... P84233 32543371
    544215 6ryu:B (4.0) BS01 dna ? GO:0000786 ... P62799 32543371
    544216 6ryu:B (4.0) BS02 dna ? GO:0000786 ... P62799 32543371
    544217 6ryu:C (4.0) BS01 dna ? GO:0000786 ... P06897 32543371
    544218 6ryu:C (4.0) BS02 dna ? GO:0000786 ... P06897 32543371
    544219 6ryu:D (4.0) BS01 dna ? GO:0000786 ... P02281 32543371
    544220 6ryu:D (4.0) BS02 dna ? GO:0000786 ... P02281 32543371
    544221 6ryu:E (4.0) BS01 dna ? GO:0000786 ... P84233 32543371
    544222 6ryu:E (4.0) BS02 dna ? GO:0000786 ... P84233 32543371
    544223 6ryu:F (4.0) BS01 dna ? GO:0000786 ... P62799 32543371
    544224 6ryu:F (4.0) BS02 dna ? GO:0000786 ... P62799 32543371
    544225 6ryu:G (4.0) BS01 dna ? GO:0000786 ... P06897 32543371
    544226 6ryu:G (4.0) BS02 dna ? GO:0000786 ... P06897 32543371
    544227 6ryu:H (4.0) BS01 dna ? GO:0000786 ... P02281 32543371
    544228 6ryu:H (4.0) BS02 dna ? GO:0000786 ... P02281 32543371
    544229 6ryu:V (4.0) BS01 dna 3.6.4.12 GO:0003677 ... Q14839 32543371
    544230 6ryu:V (4.0) BS02 dna 3.6.4.12 GO:0003677 ... Q14839 32543371
    544231 6ryu:V (4.0) BS03 ANP 3.6.4.12 GO:0003677 ... Q14839 32543371
    544232 6ryu:V (4.0) BS04 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    544233 6ryu:V (4.0) BS05 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    544234 6ryu:W (4.0) BS01 dna 3.6.4.12 GO:0003677 ... Q14839 32543371
    544235 6ryu:W (4.0) BS02 dna 3.6.4.12 GO:0003677 ... Q14839 32543371
    544236 6ryu:W (4.0) BS03 ANP 3.6.4.12 GO:0003677 ... Q14839 32543371
    544237 6ryu:W (4.0) BS04 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    544238 6ryu:W (4.0) BS05 ZN 3.6.4.12 GO:0003677 ... Q14839 32543371
    544239 6ryv:A (2.3) BS01 CU 1.1.3.7 GO:0046872 ... E3Q9X3 N/A
    544240 6ryw:A (2.6) BS01 CU 1.1.3.7 GO:0046872 ... E3Q9X3 N/A
    544241 6ryx:A (2.65) BS01 CU 1.1.3.7 GO:0046872 ... E3Q9X3 N/A
    544242 6ryz:A (1.5) BS01 SAM 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544243 6ryz:A (1.5) BS02 SAM 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544244 6ryz:B (1.5) BS01 SAM 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544245 6ryz:B (1.5) BS02 SAM 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544246 6ryz:C (1.5) BS01 SAM 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544247 6ryz:C (1.5) BS02 SAM 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544248 6rz0:A (1.1) BS01 ZN 3.1.2.6 GO:0004416 ... P0AC84 N/A
    544249 6rz0:A (1.1) BS02 ZN 3.1.2.6 GO:0004416 ... P0AC84 N/A
    544250 6rz2:A (1.77) BS01 5CD 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544251 6rz2:A (1.77) BS02 5CD 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544252 6rz2:B (1.77) BS01 5CD 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544253 6rz2:B (1.77) BS02 5CD 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544254 6rz2:C (1.77) BS01 5CD 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544255 6rz2:C (1.77) BS02 5CD 2.5.1.94 GO:0016740 ... A4X3Q0 31573135
    544256 6rz3:A (4.23) BS01 ZN ? GO:0000976 ... P04637 31395738
    544257 6rz4:A (2.7) BS01 KNT ? GO:0004930 ... P0ABE7
    Q9Y271
    31633023
    544258 6rz4:A (2.7) BS02 NA ? GO:0004930 ... P0ABE7
    Q9Y271
    31633023
    544259 6rz5:A (2.53) BS01 ZLK ? GO:0004930 ... P0ABE7
    Q9Y271
    31633023
    544260 6rz5:A (2.53) BS02 NA ? GO:0004930 ... P0ABE7
    Q9Y271
    31633023
    544261 6rz5:B (2.53) BS01 ZLK ? GO:0004930 ... P0ABE7
    Q9Y271
    31633023
    544262 6rz5:B (2.53) BS02 ZLK ? GO:0004930 ... P0ABE7
    Q9Y271
    31633023
    544263 6rz5:B (2.53) BS03 NA ? GO:0004930 ... P0ABE7
    Q9Y271
    31633023
    544264 6rz6:A (2.43) BS01 KNW ? GO:0004930 ... P0ABE7
    Q9NS75
    31811124
    544265 6rz6:A (2.43) BS02 CLR ? GO:0004930 ... P0ABE7
    Q9NS75
    31811124
    544266 6rz7:A (2.43) BS01 KNW ? GO:0004930 ... P0ABE7
    Q9NS75
    31811124
    544267 6rz8:A (2.7) BS01 KNZ ? GO:0004930 ... P0ABE7
    Q9NS75
    31811124
    544268 6rz9:A (2.73) BS01 KO5 ? GO:0004930 ... P0ABE7
    Q9NS75
    31811124
    544269 6rz9:A (2.73) BS02 CLR ? GO:0004930 ... P0ABE7
    Q9NS75
    31811124
    544270 6rza:A (4.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 31264960
    544271 6rza:A (4.5) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31264960
    544272 6rza:B (4.5) BS01 GDP ? GO:0000226 ... P02554 31264960
    544273 6rza:B (4.5) BS02 TA1 ? GO:0000226 ... P02554 31264960 BindingDB: EC50=520nM
    544274 6rza:C (4.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 31264960
    544275 6rza:C (4.5) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31264960
    544276 6rza:D (4.5) BS01 GDP ? GO:0000226 ... P02554 31264960
    544277 6rza:D (4.5) BS02 TA1 ? GO:0000226 ... P02554 31264960 BindingDB: EC50=520nM
    544278 6rzb:A (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 31264960
    544279 6rzb:A (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 31264960
    544280 6rzb:B (4.1) BS01 GDP ? GO:0000226 ... P02554 31264960
    544281 6rzb:B (4.1) BS02 TA1 ? GO:0000226 ... P02554 31264960 BindingDB: EC50=520nM
    544282 6rzf:A (1.016) BS01 KP5 ? GO:0030246 ... P17931 34467311
    544283 6rzg:A (1.015) BS01 KOW ? GO:0030246 ... P17931 34467311
    544284 6rzh:A (0.947) BS01 KOQ ? GO:0030246 ... P17931 34467311
    544285 6rzi:A (1.095) BS01 KP8 ? GO:0030246 ... P17931 38633000
    544286 6rzj:A (1.097) BS01 KPB ? GO:0030246 ... P17931 N/A
    544287 6rzk:A (1.046) BS01 KOZ ? GO:0030246 ... P17931 N/A
    544288 6rzl:A (1.045) BS01 KOE ? GO:0030246 ... P17931 N/A
    544289 6rzm:A (1.345) BS01 KON ? GO:0030246 ... P17931 N/A
    544290 6rzp:A (2.2) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    544291 6rzq:A (1.81) BS01 ANP ? GO:0005524 ... K7NTP5 31690116
    544292 6rzq:B (1.81) BS01 ANP ? GO:0005524 ... K7NTP5 31690116
    544293 6rzr:A (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544294 6rzr:A (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544295 6rzr:A (1.9) BS03 8YF 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544296 6rzr:A (1.9) BS04 8YF 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544297 6rzr:B (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544298 6rzr:B (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544299 6rzr:B (1.9) BS03 8YF 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544300 6rzs:A (2.2) BS01 LHT 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544301 6rzs:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544302 6rzs:A (2.2) BS03 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544303 6rzs:B (2.2) BS01 LHT 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544304 6rzs:B (2.2) BS02 LHT 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544305 6rzs:B (2.2) BS03 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544306 6rzs:B (2.2) BS04 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544307 6rzx:A (1.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32452709
    544308 6rzx:A (1.0) BS02 KPQ 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32452709 MOAD: Ki=7nM
    544309 6rzz:B (3.2) BS01 rna ? GO:0002181 ... P0CX45 31115337
    544310 6rzz:C (3.2) BS01 rna ? GO:0000027 ... P14126 31115337
    544311 6rzz:D (3.2) BS01 rna ? GO:0002181 ... P10664 31115337
    544312 6rzz:D (3.2) BS02 rna ? GO:0002181 ... P10664 31115337
    544313 6rzz:E (3.2) BS01 rna ? GO:0000027 ... P0C0W9 31115337
    544314 6rzz:E (3.2) BS02 rna ? GO:0000027 ... P0C0W9 31115337
    544315 6rzz:F (3.2) BS01 rna ? GO:0002181 ... P05738 31115337
    544316 6rzz:G (3.2) BS01 rna ? GO:0000027 ... Q02326 31115337
    544317 6rzz:H (3.2) BS01 rna ? GO:0000470 ... P17076 31115337
    544318 6rzz:H (3.2) BS02 rna ? GO:0000470 ... P17076 31115337
    544319 6rzz:J (3.2) BS01 rna ? GO:0000470 ... P26785 31115337
    544320 6rzz:K (3.2) BS01 rna ? GO:0002181 ... Q12690 31115337
    544321 6rzz:K (3.2) BS02 rna ? GO:0002181 ... Q12690 31115337
    544322 6rzz:L (3.2) BS01 rna ? GO:0002181 ... P0CX41 31115337
    544323 6rzz:M (3.2) BS01 rna ? GO:0000027 ... P36105 31115337
    544324 6rzz:N (3.2) BS01 rna ? GO:0002181 ... P02406 31115337
    544325 6rzz:O (3.2) BS01 rna ? GO:0002181 ... P05748 31115337
    544326 6rzz:O (3.2) BS02 rna ? GO:0002181 ... P05748 31115337
    544327 6rzz:P (3.2) BS01 rna ? GO:0000027 ... P26321 31115337
    544328 6rzz:P (3.2) BS02 rna ? GO:0000027 ... P26321 31115337
    544329 6rzz:Q (3.2) BS01 rna ? GO:0002181 ... P0CX49 31115337
    544330 6rzz:R (3.2) BS01 rna ? GO:0002181 ... P0CX82 31115337
    544331 6rzz:S (3.2) BS01 rna ? GO:0002181 ... P0CX23 31115337
    544332 6rzz:S (3.2) BS02 rna ? GO:0002181 ... P0CX23 31115337
    544333 6rzz:T (3.2) BS01 rna ? GO:0002181 ... Q02753 31115337
    544334 6rzz:T (3.2) BS02 rna ? GO:0002181 ... Q02753 31115337
    544335 6rzz:U (3.2) BS01 rna ? GO:0000448 ... P05740 31115337
    544336 6rzz:U (3.2) BS02 rna ? GO:0000448 ... P05740 31115337
    544337 6rzz:V (3.2) BS01 rna ? GO:0002181 ... P05749 31115337
    544338 6rzz:W (3.2) BS01 rna ? GO:0000027 ... P04456 31115337
    544339 6rzz:W (3.2) BS02 rna ? GO:0000027 ... P04456 31115337
    544340 6rzz:X (3.2) BS01 rna ? GO:0002181 ... P05743 31115337
    544341 6rzz:X (3.2) BS02 rna ? GO:0002181 ... P05743 31115337
    544342 6rzz:Y (3.2) BS01 rna ? GO:0002181 ... P0C2H6 31115337
    544343 6rzz:Z (3.2) BS01 rna ? GO:0000463 ... P0CX84 31115337
    544344 6rzz:Z (3.2) BS02 rna ? GO:0000463 ... P0CX84 31115337
    544345 6rzz:a (3.2) BS01 rna ? GO:0002181 ... P05747 31115337
    544346 6rzz:b (3.2) BS01 rna ? GO:0000463 ... P05737 31115337
    544347 6rzz:b (3.2) BS02 rna ? GO:0000463 ... P05737 31115337
    544348 6rzz:c (3.2) BS01 rna ? GO:0002181 ... P14120 31115337
    544349 6rzz:d (3.2) BS01 rna ? GO:0002181 ... P0C2H8 31115337
    544350 6rzz:e (3.2) BS01 rna ? GO:0002181 ... P38061 31115337
    544351 6rzz:f (3.2) BS01 rna ? GO:0000027 ... P05744 31115337
    544352 6rzz:g (3.2) BS01 rna ? GO:0002181 ... P87262 31115337
    544353 6rzz:g (3.2) BS02 ZN ? GO:0002181 ... P87262 31115337
    544354 6rzz:h (3.2) BS01 rna ? GO:0002181 ... P05745 31115337
    544355 6rzz:i (3.2) BS01 rna ? GO:0000448 ... P49166 31115337
    544356 6rzz:i (3.2) BS02 rna ? GO:0000448 ... P49166 31115337
    544357 6rzz:i (3.2) BS03 ZN ? GO:0000448 ... P49166 31115337
    544358 6rzz:j (3.2) BS01 rna ? GO:0002181 ... P49167 31115337
    544359 6rzz:k (3.2) BS01 rna ? GO:0002181 ... P04650 31115337
    544360 6rzz:k (3.2) BS02 rna ? GO:0002181 ... P04650 31115337
    544361 6rzz:l (3.2) BS01 rna ? GO:0002181 ... P0CX27 31115337
    544362 6rzz:l (3.2) BS02 ZN ? GO:0002181 ... P0CX27 31115337
    544363 6rzz:m (3.2) BS01 rna ? GO:0002181 ... P0CX25 31115337
    544364 6rzz:m (3.2) BS02 ZN ? GO:0002181 ... P0CX25 31115337
    544365 6rzz:n (3.2) BS01 rna ? GO:0000054 ... Q12522 31115337
    544366 6rzz:o (3.2) BS01 rna 3.6.1.- GO:0000027 ... P53145 31115337
    544367 6rzz:p (3.2) BS01 rna N/A N/A N/A 31115337
    544368 6rzz:r (3.2) BS01 rna 3.-.-.- GO:0000055 ... Q03862 31115337
    544369 6rzz:r (3.2) BS02 rna 3.-.-.- GO:0000055 ... Q03862 31115337
    544370 6rzz:s (3.2) BS01 rna 3.1.3.48 GO:0000027 ... Q02256 31115337
    544371 6rzz:s (3.2) BS02 ZN 3.1.3.48 GO:0000027 ... Q02256 31115337
    544372 6rzz:u (3.2) BS01 rna ? GO:0000278 ... P38344 31115337
    544373 6rzz:u (3.2) BS02 ZN ? GO:0000278 ... P38344 31115337
    544374 6rzz:u (3.2) BS03 ZN ? GO:0000278 ... P38344 31115337
    544375 6rzz:v (3.2) BS01 rna ? GO:0002181 ... P04449 31115337
    544376 6rzz:w (3.2) BS01 rna ? GO:0000055 ... P38861 31115337
    544377 6rzz:w (3.2) BS02 ZN ? GO:0000055 ... P38861 31115337
    544378 6rzz:w (3.2) BS03 ZN ? GO:0000055 ... P38861 31115337
    544379 6s00:A (2.0) BS01 SLB N/A N/A N/A 31645552
    544380 6s00:B (2.0) BS01 SLB N/A N/A N/A 31645552
    544381 6s01:A (3.2) BS01 dna ? GO:0000786 ... P84233 31819277
    544382 6s01:A (3.2) BS02 dna ? GO:0000786 ... P84233 31819277
    544383 6s01:B (3.2) BS01 dna ? GO:0000786 ... P62799 31819277
    544384 6s01:B (3.2) BS02 dna ? GO:0000786 ... P62799 31819277
    544385 6s01:C (3.2) BS01 dna ? GO:0000786 ... P06897 31819277
    544386 6s01:C (3.2) BS02 dna ? GO:0000786 ... P06897 31819277
    544387 6s01:D (3.2) BS01 dna ? GO:0000786 ... P02281 31819277
    544388 6s01:D (3.2) BS02 dna ? GO:0000786 ... P02281 31819277
    544389 6s01:E (3.2) BS01 dna ? GO:0000786 ... P84233 31819277
    544390 6s01:E (3.2) BS02 dna ? GO:0000786 ... P84233 31819277
    544391 6s01:F (3.2) BS01 dna ? GO:0000786 ... P62799 31819277
    544392 6s01:F (3.2) BS02 dna ? GO:0000786 ... P62799 31819277
    544393 6s01:G (3.2) BS01 dna ? GO:0000786 ... P06897 31819277
    544394 6s01:G (3.2) BS02 dna ? GO:0000786 ... P06897 31819277
    544395 6s01:H (3.2) BS01 dna ? GO:0000786 ... P02281 31819277
    544396 6s01:H (3.2) BS02 dna ? GO:0000786 ... P02281 31819277
    544397 6s01:K (3.2) BS01 dna ? GO:0000395 ... O75475 31819277
    544398 6s02:A (1.87) BS01 ADP ? GO:0005524 ... K7NTP5 31690116
    544399 6s02:A (1.87) BS02 MG ? GO:0005524 ... K7NTP5 31690116
    544400 6s02:B (1.87) BS01 ADP ? GO:0005524 ... K7NTP5 31690116

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).