SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    544401 6s03:A (1.38) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32452709
    544402 6s03:A (1.38) BS02 KPW 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32452709 MOAD: Ki=17nM
    544403 6s04:A (2.0) BS01 NGE N/A N/A N/A 31645552
    544404 6s04:B (2.0) BS01 NGE N/A N/A N/A 31645552
    544405 6s05:B (3.9) BS01 rna ? GO:0002181 ... P0CX45 31115337
    544406 6s05:C (3.9) BS01 rna ? GO:0000027 ... P14126 31115337
    544407 6s05:D (3.9) BS01 rna ? GO:0002181 ... P10664 31115337
    544408 6s05:D (3.9) BS02 rna ? GO:0002181 ... P10664 31115337
    544409 6s05:E (3.9) BS01 rna ? GO:0000027 ... P0C0W9 31115337
    544410 6s05:E (3.9) BS02 rna ? GO:0000027 ... P0C0W9 31115337
    544411 6s05:F (3.9) BS01 rna ? GO:0002181 ... P05738 31115337
    544412 6s05:G (3.9) BS01 rna ? GO:0000027 ... Q02326 31115337
    544413 6s05:H (3.9) BS01 rna ? GO:0000470 ... P17076 31115337
    544414 6s05:H (3.9) BS02 rna ? GO:0000470 ... P17076 31115337
    544415 6s05:J (3.9) BS01 rna ? GO:0000470 ... P26785 31115337
    544416 6s05:K (3.9) BS01 rna ? GO:0002181 ... Q12690 31115337
    544417 6s05:K (3.9) BS02 rna ? GO:0002181 ... Q12690 31115337
    544418 6s05:L (3.9) BS01 rna ? GO:0002181 ... P0CX41 31115337
    544419 6s05:M (3.9) BS01 rna ? GO:0000027 ... P36105 31115337
    544420 6s05:N (3.9) BS01 rna ? GO:0002181 ... P02406 31115337
    544421 6s05:O (3.9) BS01 rna ? GO:0002181 ... P05748 31115337
    544422 6s05:O (3.9) BS02 rna ? GO:0002181 ... P05748 31115337
    544423 6s05:P (3.9) BS01 rna ? GO:0000027 ... P26321 31115337
    544424 6s05:P (3.9) BS02 rna ? GO:0000027 ... P26321 31115337
    544425 6s05:Q (3.9) BS01 rna ? GO:0002181 ... P0CX49 31115337
    544426 6s05:R (3.9) BS01 rna ? GO:0002181 ... P0CX82 31115337
    544427 6s05:S (3.9) BS01 rna ? GO:0002181 ... P0CX23 31115337
    544428 6s05:S (3.9) BS02 rna ? GO:0002181 ... P0CX23 31115337
    544429 6s05:T (3.9) BS01 rna ? GO:0002181 ... Q02753 31115337
    544430 6s05:T (3.9) BS02 rna ? GO:0002181 ... Q02753 31115337
    544431 6s05:U (3.9) BS01 rna ? GO:0000448 ... P05740 31115337
    544432 6s05:U (3.9) BS02 rna ? GO:0000448 ... P05740 31115337
    544433 6s05:V (3.9) BS01 rna ? GO:0002181 ... P05749 31115337
    544434 6s05:W (3.9) BS01 rna ? GO:0000027 ... P04456 31115337
    544435 6s05:W (3.9) BS02 rna ? GO:0000027 ... P04456 31115337
    544436 6s05:X (3.9) BS01 rna ? GO:0002181 ... P05743 31115337
    544437 6s05:X (3.9) BS02 rna ? GO:0002181 ... P05743 31115337
    544438 6s05:Y (3.9) BS01 rna ? GO:0002181 ... P0C2H6 31115337
    544439 6s05:Z (3.9) BS01 rna ? GO:0000463 ... P0CX84 31115337
    544440 6s05:Z (3.9) BS02 rna ? GO:0000463 ... P0CX84 31115337
    544441 6s05:a (3.9) BS01 rna ? GO:0002181 ... P05747 31115337
    544442 6s05:b (3.9) BS01 rna ? GO:0000463 ... P05737 31115337
    544443 6s05:b (3.9) BS02 rna ? GO:0000463 ... P05737 31115337
    544444 6s05:c (3.9) BS01 rna ? GO:0002181 ... P14120 31115337
    544445 6s05:d (3.9) BS01 rna ? GO:0002181 ... P0C2H8 31115337
    544446 6s05:e (3.9) BS01 rna ? GO:0002181 ... P38061 31115337
    544447 6s05:f (3.9) BS01 rna ? GO:0000027 ... P05744 31115337
    544448 6s05:g (3.9) BS01 rna ? GO:0002181 ... P87262 31115337
    544449 6s05:g (3.9) BS02 ZN ? GO:0002181 ... P87262 31115337
    544450 6s05:h (3.9) BS01 rna ? GO:0002181 ... P05745 31115337
    544451 6s05:i (3.9) BS01 rna ? GO:0000448 ... P49166 31115337
    544452 6s05:i (3.9) BS02 rna ? GO:0000448 ... P49166 31115337
    544453 6s05:i (3.9) BS03 ZN ? GO:0000448 ... P49166 31115337
    544454 6s05:j (3.9) BS01 rna ? GO:0002181 ... P49167 31115337
    544455 6s05:k (3.9) BS01 rna ? GO:0002181 ... P04650 31115337
    544456 6s05:k (3.9) BS02 rna ? GO:0002181 ... P04650 31115337
    544457 6s05:l (3.9) BS01 rna ? GO:0002181 ... P0CX27 31115337
    544458 6s05:l (3.9) BS02 ZN ? GO:0002181 ... P0CX27 31115337
    544459 6s05:m (3.9) BS01 rna ? GO:0002181 ... P0CX25 31115337
    544460 6s05:m (3.9) BS02 ZN ? GO:0002181 ... P0CX25 31115337
    544461 6s05:n (3.9) BS01 rna ? GO:0000054 ... Q12522 31115337
    544462 6s05:o (3.9) BS01 rna 3.6.1.- GO:0000027 ... P53145 31115337
    544463 6s05:p (3.9) BS01 rna N/A N/A N/A 31115337
    544464 6s05:s (3.9) BS01 rna 3.1.3.48 GO:0000027 ... Q02256 31115337
    544465 6s05:s (3.9) BS02 ZN 3.1.3.48 GO:0000027 ... Q02256 31115337
    544466 6s05:v (3.9) BS01 rna ? GO:0002181 ... P04449 31115337
    544467 6s05:w (3.9) BS01 rna ? GO:0000055 ... P38861 31115337
    544468 6s05:w (3.9) BS02 ZN ? GO:0000055 ... P38861 31115337
    544469 6s05:z (3.9) BS01 rna ? GO:0005737 ... Q06709 31115337
    544470 6s05:z (3.9) BS02 rna ? GO:0005737 ... Q06709 31115337
    544471 6s07:A (1.04) BS01 peptide 1.8.3.7 GO:0016491 ... D1A7C3 31588272
    544472 6s07:A (1.04) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 31588272
    544473 6s07:A (1.04) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 31588272
    544474 6s07:A (1.04) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 31588272
    544475 6s08:A (2.03) BS01 FUC ? N/A P27918 31552043
    544476 6s08:A (2.03) BS02 MAN ? N/A P27918 31552043
    544477 6s08:A (2.03) BS03 MAN ? N/A P27918 31552043
    544478 6s08:A (2.03) BS04 MAN ? N/A P27918 31552043
    544479 6s08:A (2.03) BS05 MAN ? N/A P27918 31552043
    544480 6s08:A (2.03) BS06 MAN ? N/A P27918 31552043
    544481 6s08:A (2.03) BS07 MAN ? N/A P27918 31552043
    544482 6s08:A (2.03) BS08 MAN ? N/A P27918 31552043
    544483 6s08:B (2.03) BS01 MAN ? N/A P27918 31552043
    544484 6s08:B (2.03) BS02 FUC ? N/A P27918 31552043
    544485 6s0a:A (2.52) BS01 MAN ? N/A P27918 31552043
    544486 6s0a:A (2.52) BS02 MAN ? N/A P27918 31552043
    544487 6s0a:A (2.52) BS03 MAN ? N/A P27918 31552043
    544488 6s0a:A (2.52) BS04 MAN ? N/A P27918 31552043
    544489 6s0a:A (2.52) BS05 MAN ? N/A P27918 31552043
    544490 6s0a:A (2.52) BS06 MAN ? N/A P27918 31552043
    544491 6s0a:A (2.52) BS07 MAN ? N/A P27918 31552043
    544492 6s0a:B (2.52) BS01 MAN ? N/A P27918 31552043
    544493 6s0a:B (2.52) BS02 MAN ? N/A P27918 31552043
    544494 6s0a:B (2.52) BS03 MAN ? N/A P27918 31552043
    544495 6s0b:A (2.312) BS01 FUC ? N/A P27918 31552043
    544496 6s0b:A (2.312) BS02 MAN ? N/A P27918 31552043
    544497 6s0b:A (2.312) BS03 MAN ? N/A P27918 31552043
    544498 6s0b:A (2.312) BS04 MAN ? N/A P27918 31552043
    544499 6s0b:A (2.312) BS05 MAN ? N/A P27918 31552043
    544500 6s0b:A (2.312) BS06 MAN ? N/A P27918 31552043
    544501 6s0b:A (2.312) BS07 MAN ? N/A P27918 31552043
    544502 6s0b:A (2.312) BS08 MAN ? N/A P27918 31552043
    544503 6s0b:B (2.312) BS01 MAN ? N/A P27918 31552043
    544504 6s0c:A (1.46) BS01 PLP 4.4.1.11 GO:0005737 ... A0A0A5P8W7 31711941
    544505 6s0d:A (1.52) BS01 MN 1.15.1.1 GO:0004784 ... P41977 N/A
    544506 6s0d:C (1.52) BS01 MN 1.15.1.1 GO:0004784 ... P41977 N/A
    544507 6s0e:A (1.9) BS01 DAN N/A N/A N/A 31645552
    544508 6s0e:B (1.9) BS01 DAN N/A N/A N/A 31645552
    544509 6s0f:A (2.0) BS01 KDN N/A N/A N/A 31645552
    544510 6s0f:B (2.0) BS01 KDN N/A N/A N/A 31645552
    544511 6s0g:B (1.45) BS01 FMN ? GO:0000166 ... M2XAQ9 31930452
    544512 6s0h:A (2.85) BS01 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544513 6s0h:A (2.85) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544514 6s0h:A (2.85) BS03 KQ8 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544515 6s0h:B (2.85) BS01 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544516 6s0h:B (2.85) BS02 ZN 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544517 6s0h:B (2.85) BS03 KQ8 3.5.2.6 GO:0008270 ... Q7WYA8 32205343
    544518 6s0i:A (1.803) BS01 ZN 3.1.2.6 GO:0004416 ... P0AC84 N/A
    544519 6s0i:A (1.803) BS02 ZN 3.1.2.6 GO:0004416 ... P0AC84 N/A
    544520 6s0j:A (1.5) BS01 KQB 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A024B7W1 33717640
    544521 6s0j:A (1.5) BS02 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A024B7W1 33717640
    544522 6s0k:C (3.1) BS01 rna ? GO:0000027 ... P60422 31570874
    544523 6s0k:D (3.1) BS01 rna ? GO:0000027 ... P60438 31570874
    544524 6s0k:E (3.1) BS01 rna ? GO:0001070 ... P60723 31570874
    544525 6s0k:F (3.1) BS01 rna ? GO:0000027 ... P62399 31570874
    544526 6s0k:F (3.1) BS02 rna ? GO:0000027 ... P62399 31570874
    544527 6s0k:G (3.1) BS01 rna ? GO:0000027 ... P0AG55 31570874
    544528 6s0k:H (3.1) BS01 rna ? GO:0002181 ... P0A7R1 31570874
    544529 6s0k:I (3.1) BS01 rna N/A GO:0003735 ... N/A 31570874
    544530 6s0k:J (3.1) BS01 rna ? GO:0000027 ... P0A7J7 31570874
    544531 6s0k:K (3.1) BS01 rna ? GO:0002181 ... P0AA10 31570874
    544532 6s0k:L (3.1) BS01 rna ? GO:0002181 ... P0ADY3 31570874
    544533 6s0k:M (3.1) BS01 rna ? GO:0002181 ... P02413 31570874
    544534 6s0k:N (3.1) BS01 rna ? GO:0000027 ... P0ADY7 31570874
    544535 6s0k:N (3.1) BS02 rna ? GO:0000027 ... P0ADY7 31570874
    544536 6s0k:O (3.1) BS01 rna ? GO:0000027 ... P0AG44 31570874
    544537 6s0k:P (3.1) BS01 rna ? GO:0002181 ... P0C018 31570874
    544538 6s0k:P (3.1) BS02 rna ? GO:0002181 ... P0C018 31570874
    544539 6s0k:Q (3.1) BS01 rna ? GO:0000027 ... P0A7K6 31570874
    544540 6s0k:R (3.1) BS01 rna ? GO:0000027 ... P0A7L3 31570874
    544541 6s0k:S (3.1) BS01 rna ? GO:0002181 ... P0AG48 31570874
    544542 6s0k:T (3.1) BS01 rna ? GO:0002181 ... P61175 31570874
    544543 6s0k:U (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 31570874
    544544 6s0k:V (3.1) BS01 rna ? GO:0000027 ... P60624 31570874
    544545 6s0k:W (3.1) BS01 rna ? GO:0000027 ... P68919 31570874
    544546 6s0k:X (3.1) BS01 rna ? GO:0000027 ... P0A7L8 31570874
    544547 6s0k:X (3.1) BS02 rna ? GO:0000027 ... P0A7L8 31570874
    544548 6s0k:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M2 31570874
    544549 6s0k:Z (3.1) BS01 rna ? GO:0000027 ... P0A7M6 31570874
    544550 6s0k:a (3.1) BS01 rna ? GO:0000027 ... P0AG51 31570874
    544551 6s0k:b (3.1) BS01 rna ? GO:0000027 ... P0A7N4 31570874
    544552 6s0k:c (3.1) BS01 rna ? GO:0000027 ... P0A7N9 31570874
    544553 6s0k:d (3.1) BS01 rna ? GO:0002181 ... P0A7P5 31570874
    544554 6s0k:e (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 31570874
    544555 6s0k:f (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 31570874
    544556 6s0k:f (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 31570874
    544557 6s0k:h (3.1) BS01 rna 7.4.2.8 GO:0005524 ... A0A037YQ84 31570874
    544558 6s0k:k (3.1) BS01 rna N/A N/A N/A 31570874
    544559 6s0l:A (2.65) BS01 ZMA ? GO:0001609 ... P29274 33209311 BindingDB: Ki=1.9nM, Kd=0.22nM, IC50=42nM
    544560 6s0l:A (2.65) BS02 CLR ? GO:0001609 ... P29274 33209311
    544561 6s0l:A (2.65) BS03 CLR ? GO:0001609 ... P29274 33209311
    544562 6s0m:B (2.0) BS01 rna 3.1.13.- GO:0000287 ... P9WJ73 31299874
    544563 6s0m:B (2.0) BS02 MG 3.1.13.- GO:0000287 ... P9WJ73 31299874
    544564 6s0m:B (2.0) BS03 MG 3.1.13.- GO:0000287 ... P9WJ73 31299874
    544565 6s0o:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544566 6s0o:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544567 6s0o:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544568 6s0o:B (1.8) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544569 6s0o:B (1.8) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544570 6s0o:B (1.8) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544571 6s0o:B (1.8) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544572 6s0o:B (1.8) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544573 6s0o:C (1.8) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544574 6s0o:C (1.8) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544575 6s0o:C (1.8) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544576 6s0o:D (1.8) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544577 6s0o:D (1.8) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544578 6s0o:D (1.8) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544579 6s0o:D (1.8) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544580 6s0o:E (1.8) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544581 6s0o:E (1.8) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544582 6s0o:E (1.8) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544583 6s0o:E (1.8) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544584 6s0o:E (1.8) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544585 6s0o:F (1.8) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544586 6s0o:F (1.8) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544587 6s0o:F (1.8) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    544588 6s0p:A (1.24) BS01 FE 1.13.11.20 GO:0005506 ... Q9SJI9 32868422
    544589 6s0q:A (2.65) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274
    33209311
    544590 6s0q:A (2.65) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    33209311
    544591 6s0q:A (2.65) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    33209311
    544592 6s0s:A (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    544593 6s0s:A (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    544594 6s0s:B (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    544595 6s0s:B (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    544596 6s0s:C (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    544597 6s0s:C (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    544598 6s0s:D (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    544599 6s0s:D (2.4) BS02 RIO 1.14.11.37 GO:0016491 ... Q6L732 32592631
    544600 6s0s:E (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).