SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    545001 6s3q:C (3.34) BS02 Y01 ? GO:0001662 ... P43005 N/A
    545002 6s3t:A (3.5) BS01 XYP ? GO:0005886 ... P0C0J8 32355038
    545003 6s3t:B (3.5) BS01 XYP ? GO:0005886 ... P0C0J8 32355038
    545004 6s3t:S (3.5) BS01 XYP ? GO:0005886 ... P0C0J8 32355038
    545005 6s3t:T (3.5) BS01 XYP ? GO:0005886 ... P0C0J8 32355038
    545006 6s3v:A (2.0) BS01 ZN 3.1.1.3 GO:0004806 ... Q93A71 N/A
    545007 6s3v:A (2.0) BS02 CA 3.1.1.3 GO:0004806 ... Q93A71 N/A
    545008 6s3w:A (-1.00) BS01 peptide ? GO:0016020 ... P50600 32161270
    545009 6s3x:A (1.72) BS01 AG2 2.5.1.44 GO:0016740 ... O32323 34605434
    545010 6s3x:A (1.72) BS02 NAD 2.5.1.44 GO:0016740 ... O32323 34605434
    545011 6s3x:B (1.72) BS01 AG2 2.5.1.44 GO:0016740 ... O32323 34605434
    545012 6s3x:B (1.72) BS02 NAD 2.5.1.44 GO:0016740 ... O32323 34605434
    545013 6s3z:A (1.85) BS01 FRU ? GO:0004553 ... J7HDY4 31767902
    545014 6s3z:A (1.85) BS02 PLQ ? GO:0004553 ... J7HDY4 31767902
    545015 6s3z:A (1.85) BS03 PLQ ? GO:0004553 ... J7HDY4 31767902
    545016 6s3z:B (1.85) BS01 FRU ? GO:0004553 ... J7HDY4 31767902
    545017 6s3z:B (1.85) BS02 PLQ ? GO:0004553 ... J7HDY4 31767902
    545018 6s3z:B (1.85) BS03 PLQ ? GO:0004553 ... J7HDY4 31767902
    545019 6s40:A (1.9) BS01 peptide ? GO:0000122 ... P31947 32501690
    545020 6s40:A (1.9) BS02 MG ? GO:0000122 ... P31947 32501690
    545021 6s40:A (1.9) BS03 KTW ? GO:0000122 ... P31947 32501690
    545022 6s40:A (1.9) BS04 KTW ? GO:0000122 ... P31947 32501690
    545023 6s40:A (1.9) BS05 KTW ? GO:0000122 ... P31947 32501690
    545024 6s40:A (1.9) BS06 CA ? GO:0000122 ... P31947 32501690
    545025 6s41:A (2.7) BS01 KUB ? GO:0003677 ... O75469 31525968 BindingDB: EC50=400nM
    545026 6s41:B (2.7) BS01 KUB ? GO:0003677 ... O75469 31525968 BindingDB: EC50=400nM
    545027 6s43:A (1.42) BS01 KUE 4.2.1.2 GO:0003824 ... P9WN93 31517489 MOAD: ic50=4uM
    545028 6s43:A (1.42) BS02 KUE 4.2.1.2 GO:0003824 ... P9WN93 31517489 MOAD: ic50=4uM
    545029 6s43:C (1.42) BS01 KUE 4.2.1.2 GO:0003824 ... P9WN93 31517489 MOAD: ic50=4uM
    545030 6s43:C (1.42) BS02 KUE 4.2.1.2 GO:0003824 ... P9WN93 31517489 MOAD: ic50=4uM
    545031 6s45:A (2.2) BS01 FMN 2.7.11.1 N/A P93025 32695419
    545032 6s46:A (2.75) BS01 FMN 2.7.11.1 N/A P93025 32695419
    545033 6s47:AD (3.28) BS01 rna ? GO:0002181 ... P0CX45 31299085
    545034 6s47:AD (3.28) BS02 rna ? GO:0002181 ... P0CX45 31299085
    545035 6s47:AE (3.28) BS01 rna ? GO:0000027 ... P14126 31299085
    545036 6s47:AF (3.28) BS01 rna ? GO:0002181 ... P10664 31299085
    545037 6s47:AF (3.28) BS02 rna ? GO:0002181 ... P10664 31299085
    545038 6s47:AG (3.28) BS01 rna ? GO:0000027 ... P26321 31299085
    545039 6s47:AG (3.28) BS02 rna ? GO:0000027 ... P26321 31299085
    545040 6s47:AH (3.28) BS01 rna ? GO:0000027 ... Q02326 31299085
    545041 6s47:AI (3.28) BS01 rna ? GO:0000463 ... P05737 31299085
    545042 6s47:AI (3.28) BS02 rna ? GO:0000463 ... P05737 31299085
    545043 6s47:AJ (3.28) BS01 rna ? GO:0000470 ... P17076 31299085
    545044 6s47:AJ (3.28) BS02 rna ? GO:0000470 ... P17076 31299085
    545045 6s47:AK (3.28) BS01 rna ? GO:0002181 ... P05738 31299085
    545046 6s47:AL (3.28) BS01 rna ? GO:0000027 ... P41805 31299085
    545047 6s47:AL (3.28) BS02 rna ? GO:0000027 ... P41805 31299085
    545048 6s47:AM (3.28) BS01 rna ? GO:0000027 ... Q3E757 31299085
    545049 6s47:AM (3.28) BS02 rna ? GO:0000027 ... Q3E757 31299085
    545050 6s47:AN (3.28) BS01 rna ? GO:0002181 ... Q12690 31299085
    545051 6s47:AN (3.28) BS02 rna ? GO:0002181 ... Q12690 31299085
    545052 6s47:AO (3.28) BS01 rna ? GO:0000027 ... P36105 31299085
    545053 6s47:AP (3.28) BS01 rna ? GO:0002181 ... P05748 31299085
    545054 6s47:AP (3.28) BS02 rna ? GO:0002181 ... P05748 31299085
    545055 6s47:AQ (3.28) BS01 rna ? GO:0000470 ... P26784 31299085
    545056 6s47:AR (3.28) BS01 rna ? GO:0000448 ... P05740 31299085
    545057 6s47:AR (3.28) BS02 rna ? GO:0000448 ... P05740 31299085
    545058 6s47:AS (3.28) BS01 rna ? GO:0002181 ... P0CX49 31299085
    545059 6s47:AT (3.28) BS01 rna ? GO:0002181 ... P0CX82 31299085
    545060 6s47:AU (3.28) BS01 rna ? GO:0002181 ... P0CX23 31299085
    545061 6s47:AU (3.28) BS02 rna ? GO:0002181 ... P0CX23 31299085
    545062 6s47:AV (3.28) BS01 rna ? GO:0002181 ... Q02753 31299085
    545063 6s47:AV (3.28) BS02 rna ? GO:0002181 ... Q02753 31299085
    545064 6s47:AW (3.28) BS01 rna ? GO:0002181 ... P05749 31299085
    545065 6s47:AX (3.28) BS01 rna ? GO:0002181 ... P0CX41 31299085
    545066 6s47:AY (3.28) BS01 rna ? GO:0002181 ... P04449 31299085
    545067 6s47:AZ (3.28) BS01 rna ? GO:0000027 ... P04456 31299085
    545068 6s47:AZ (3.28) BS02 rna ? GO:0000027 ... P04456 31299085
    545069 6s47:Aa (3.28) BS01 rna ? GO:0002181 ... P05743 31299085
    545070 6s47:Aa (3.28) BS02 rna ? GO:0002181 ... P05743 31299085
    545071 6s47:Ab (3.28) BS01 rna ? GO:0002181 ... P0C2H6 31299085
    545072 6s47:Ac (3.28) BS01 rna ? GO:0002181 ... P02406 31299085
    545073 6s47:Ad (3.28) BS01 rna ? GO:0002181 ... P05747 31299085
    545074 6s47:Ae (3.28) BS01 rna ? GO:0002181 ... P14120 31299085
    545075 6s47:Af (3.28) BS01 rna ? GO:0002181 ... P0C2H8 31299085
    545076 6s47:Ag (3.28) BS01 rna ? GO:0002181 ... P38061 31299085
    545077 6s47:Ah (3.28) BS01 rna ? GO:0000027 ... P05744 31299085
    545078 6s47:Ai (3.28) BS01 rna ? GO:0002181 ... P87262 31299085
    545079 6s47:Aj (3.28) BS01 rna ? GO:0000463 ... P0CX84 31299085
    545080 6s47:Aj (3.28) BS02 rna ? GO:0000463 ... P0CX84 31299085
    545081 6s47:Ak (3.28) BS01 rna ? GO:0002181 ... P05745 31299085
    545082 6s47:Al (3.28) BS01 rna ? GO:0000448 ... P49166 31299085
    545083 6s47:Al (3.28) BS02 rna ? GO:0000448 ... P49166 31299085
    545084 6s47:Am (3.28) BS01 rna ? GO:0002181 ... P49167 31299085
    545085 6s47:An (3.28) BS01 rna ? GO:0002181 ... P04650 31299085
    545086 6s47:An (3.28) BS02 rna ? GO:0002181 ... P04650 31299085
    545087 6s47:Ao (3.28) BS01 rna ? GO:0000027 ... P0CH08 31299085
    545088 6s47:Aq (3.28) BS01 rna ? GO:0002181 ... P0CX27 31299085
    545089 6s47:Ar (3.28) BS01 rna ? GO:0002181 ... P0CX25 31299085
    545090 6s47:BB (3.28) BS01 rna ? GO:0000028 ... P32905 31299085
    545091 6s47:BC (3.28) BS01 rna ? GO:0003735 ... B3RHV0 31299085
    545092 6s47:BD (3.28) BS01 rna ? GO:0000054 ... P25443 31299085
    545093 6s47:BE (3.28) BS01 rna ? GO:0000054 ... P05750 31299085
    545094 6s47:BF (3.28) BS01 rna ? GO:0002181 ... P0CX35 31299085
    545095 6s47:BG (3.28) BS01 rna ? GO:0003723 ... A0A1L4AA68 31299085
    545096 6s47:BH (3.28) BS01 rna ? GO:0000462 ... P0CX37 31299085
    545097 6s47:BI (3.28) BS01 rna ? GO:0002181 ... P26786 31299085
    545098 6s47:BJ (3.28) BS01 rna ? GO:0000462 ... P0CX39 31299085
    545099 6s47:BJ (3.28) BS02 rna ? GO:0000462 ... P0CX39 31299085
    545100 6s47:BK (3.28) BS01 rna ? GO:0000462 ... O13516 31299085
    545101 6s47:BL (3.28) BS01 rna ? GO:0000054 ... Q08745 31299085
    545102 6s47:BM (3.28) BS01 rna ? GO:0000028 ... P0CX47 31299085
    545103 6s47:BN (3.28) BS01 rna ? GO:0000028 ... P48589 31299085
    545104 6s47:BO (3.28) BS01 rna ? GO:0000462 ... P05756 31299085
    545105 6s47:BO (3.28) BS02 rna ? GO:0000462 ... P05756 31299085
    545106 6s47:BP (3.28) BS01 rna ? GO:0000028 ... P06367 31299085
    545107 6s47:BQ (3.28) BS01 rna ? GO:0000028 ... Q01855 31299085
    545108 6s47:BR (3.28) BS01 rna ? GO:0000462 ... P0CX51 31299085
    545109 6s47:BS (3.28) BS01 rna ? GO:0000028 ... P02407 31299085
    545110 6s47:BT (3.28) BS01 rna ? GO:0000054 ... P0CX55 31299085
    545111 6s47:BU (3.28) BS01 rna ? GO:0000028 ... P07280 31299085
    545112 6s47:BV (3.28) BS01 rna ? GO:0000462 ... P38701 31299085
    545113 6s47:BW (3.28) BS01 rna ? GO:0000447 ... P0C0V8 31299085
    545114 6s47:BX (3.28) BS01 rna ? GO:0002181 ... P0C0W1 31299085
    545115 6s47:BY (3.28) BS01 rna ? GO:0000462 ... P0CX29 31299085
    545116 6s47:BZ (3.28) BS01 rna ? GO:0000462 ... P0CX31 31299085
    545117 6s47:Ba (3.28) BS01 rna ? GO:0002181 ... Q3E792 31299085
    545118 6s47:Bb (3.28) BS01 rna ? GO:0000054 ... P39939 31299085
    545119 6s47:Bc (3.28) BS01 rna ? GO:0000028 ... P35997 31299085
    545120 6s47:Bd (3.28) BS01 rna ? GO:0000028 ... Q3E7X9 31299085
    545121 6s47:Be (3.28) BS01 rna ? GO:0002181 ... P41057 31299085
    545122 6s47:Bf (3.28) BS01 rna ? GO:0002181 ... P0CX33 31299085
    545123 6s47:Bg (3.28) BS01 rna ? GO:0000028 ... P05759 31299085
    545124 6s47:Bh (3.28) BS01 rna ? GO:0001965 ... P38011 31299085
    545125 6s47:Bi (3.28) BS01 rna ? GO:0005524 ... Q08972 31299085
    545126 6s47:Bi (3.28) BS02 rna ? GO:0005524 ... Q08972 31299085
    545127 6s47:Bi (3.28) BS03 ATP ? GO:0005524 ... Q08972 31299085
    545128 6s47:Bi (3.28) BS04 ATP ? GO:0005524 ... Q08972 31299085
    545129 6s48:A (1.9) BS01 dna ? GO:0003677 ... Q8YYB7 32459314
    545130 6s48:A (1.9) BS02 dna ? GO:0003677 ... Q8YYB7 32459314
    545131 6s48:A (1.9) BS03 dna ? GO:0003677 ... Q8YYB7 32459314
    545132 6s48:A (1.9) BS04 dna ? GO:0003677 ... Q8YYB7 32459314
    545133 6s48:A (1.9) BS05 dna ? GO:0003677 ... Q8YYB7 32459314
    545134 6s48:A (1.9) BS06 dna ? GO:0003677 ... Q8YYB7 32459314
    545135 6s48:A (1.9) BS07 dna ? GO:0003677 ... Q8YYB7 32459314
    545136 6s48:A (1.9) BS08 CA ? GO:0003677 ... Q8YYB7 32459314
    545137 6s48:A (1.9) BS09 CA ? GO:0003677 ... Q8YYB7 32459314
    545138 6s48:B (1.9) BS01 dna ? GO:0003677 ... Q8YYB7 32459314
    545139 6s48:B (1.9) BS02 dna ? GO:0003677 ... Q8YYB7 32459314
    545140 6s48:B (1.9) BS03 dna ? GO:0003677 ... Q8YYB7 32459314
    545141 6s48:B (1.9) BS04 dna ? GO:0003677 ... Q8YYB7 32459314
    545142 6s48:B (1.9) BS05 dna ? GO:0003677 ... Q8YYB7 32459314
    545143 6s48:B (1.9) BS06 CA ? GO:0003677 ... Q8YYB7 32459314
    545144 6s49:A (1.69) BS01 AG2 2.5.1.44 GO:0016740 ... O32323 34605434
    545145 6s49:A (1.69) BS02 NAD 2.5.1.44 GO:0016740 ... O32323 34605434
    545146 6s49:B (1.69) BS01 AG2 2.5.1.44 GO:0016740 ... O32323 34605434
    545147 6s49:B (1.69) BS02 NAD 2.5.1.44 GO:0016740 ... O32323 34605434
    545148 6s4a:A (1.95) BS01 KUK 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545149 6s4a:A (1.95) BS02 NAD 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545150 6s4a:B (1.95) BS01 KUK 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545151 6s4a:B (1.95) BS02 NAD 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545152 6s4b:A (1.6) BS01 KUH ? N/A O60885 33275431 MOAD: Kd=0.14uM
    545153 6s4b:A (1.6) BS02 CA ? N/A O60885 33275431
    545154 6s4c:A (2.0) BS01 MG ? N/A Q63870 32031736
    545155 6s4d:A (1.8) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 34605434
    545156 6s4d:A (1.8) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 34605434
    545157 6s4d:B (1.8) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 34605434
    545158 6s4d:B (1.8) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 34605434
    545159 6s4d:B (1.8) BS03 1PS 2.5.1.44 GO:0016740 ... O32323 34605434
    545160 6s4e:A (1.9) BS01 9L9 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545161 6s4e:A (1.9) BS02 NAD 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545162 6s4f:A (2.2) BS01 KUN 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545163 6s4f:A (2.2) BS02 ADP 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545164 6s4f:B (2.2) BS01 KUN 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    545165 6s4g:A (1.67) BS01 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    545166 6s4g:A (1.67) BS02 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    545167 6s4g:B (1.67) BS01 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    545168 6s4g:B (1.67) BS02 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    545169 6s4g:C (1.67) BS01 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    545170 6s4g:C (1.67) BS02 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    545171 6s4g:D (1.67) BS01 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    545172 6s4g:D (1.67) BS02 PMP 2.6.1.62 GO:0004015 ... Q7NWG4 31740704
    545173 6s4h:A (2.45) BS01 KUQ 2.4.1.1 GO:0000166 ... P00489 31767404 MOAD: Ki=68.6uM
    545174 6s4h:A (2.45) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 31767404
    545175 6s4k:A (2.43) BS01 KVW 2.4.1.1 GO:0000166 ... P00489 31767404 MOAD: Ki=310uM
    BindingDB: Ki=310000nM
    545176 6s4k:A (2.43) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 31767404
    545177 6s4n:A (1.9) BS01 KUW ? GO:0003677 ... P55055 31799433 MOAD: Kd=1.6uM
    545178 6s4n:B (1.9) BS01 KUW ? GO:0003677 ... P55055 31799433 MOAD: Kd=1.6uM
    545179 6s4n:B (1.9) BS02 KUW ? GO:0003677 ... P55055 31799433 MOAD: Kd=1.6uM
    545180 6s4n:C (1.9) BS01 KUW ? GO:0003677 ... P55055 31799433 MOAD: Kd=1.6uM
    545181 6s4n:D (1.9) BS01 KUW ? GO:0003677 ... P55055 31799433 MOAD: Kd=1.6uM
    545182 6s4n:D (1.9) BS02 KUW ? GO:0003677 ... P55055 31799433 MOAD: Kd=1.6uM
    545183 6s4n:D (1.9) BS03 KUW ? GO:0003677 ... P55055 31799433 MOAD: Kd=1.6uM
    545184 6s4o:A (2.35) BS01 KV5 2.4.1.1 GO:0000166 ... P00489 31767404 MOAD: Ki=4.58uM
    545185 6s4o:A (2.35) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 31767404
    545186 6s4o:A (2.35) BS03 IMP 2.4.1.1 GO:0000166 ... P00489 31767404
    545187 6s4p:A (2.37) BS01 KVE 2.4.1.1 GO:0000166 ... P00489 31767404 MOAD: Ki=158uM
    BindingDB: Ki=158000nM
    545188 6s4p:A (2.37) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 31767404
    545189 6s4q:A (1.85) BS01 4IR ? GO:0005576 ... P22629 31509711
    545190 6s4q:A (1.85) BS02 4IR ? GO:0005576 ... P22629 31509711
    545191 6s4q:B (1.85) BS01 4IR ? GO:0005576 ... P22629 31509711
    545192 6s4q:B (1.85) BS02 4IR ? GO:0005576 ... P22629 31509711
    545193 6s4r:A (2.3) BS01 KVH 2.4.1.1 GO:0000166 ... P00489 31767404 MOAD: Ki=26.2uM
    545194 6s4r:A (2.3) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 31767404
    545195 6s4t:A (2.0) BS01 KVB ? GO:0003677 ... P55055 31799433 MOAD: Ki=0.00000079M
    BindingDB: EC50=90nM, IC50=2000nM
    545196 6s4t:A (2.0) BS02 KVB ? GO:0003677 ... P55055 31799433 MOAD: Ki=0.00000079M
    BindingDB: EC50=90nM, IC50=2000nM
    545197 6s4u:A (2.81) BS01 KVK ? GO:0003677 ... P55055 31799433
    545198 6s4u:B (2.81) BS01 KVK ? GO:0003677 ... P55055 31799433
    545199 6s4u:C (2.81) BS01 KVK ? GO:0003677 ... P55055 31799433
    545200 6s50:A (2.0) BS01 4IR ? GO:0005576 ... P22629 31509711

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).