SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    545201 6s50:A (2.0) BS02 4IR ? GO:0005576 ... P22629 31509711
    545202 6s50:B (2.0) BS01 4IR ? GO:0005576 ... P22629 31509711
    545203 6s50:B (2.0) BS02 4IR ? GO:0005576 ... P22629 31509711
    545204 6s51:A (2.37) BS01 KVQ 2.4.1.1 GO:0000166 ... P00489 31767404 MOAD: Ki=326uM
    545205 6s51:A (2.37) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 31767404
    545206 6s52:A (2.37) BS01 KVN 2.4.1.1 GO:0000166 ... P00489 31767404 MOAD: Ki=162.3uM
    545207 6s52:A (2.37) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 31767404
    545208 6s53:A (2.8) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31582740
    545209 6s53:A (2.8) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31582740
    545210 6s53:B (2.8) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31582740
    545211 6s53:B (2.8) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31582740
    545212 6s53:G (2.8) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31582740
    545213 6s53:G (2.8) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31582740
    545214 6s53:H (2.8) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31582740
    545215 6s53:H (2.8) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31582740
    545216 6s54:A (2.21) BS01 PLP ? GO:0008483 ... A0A2S8XV37 31681755
    545217 6s54:B (2.21) BS01 PLP ? GO:0008483 ... A0A2S8XV37 31681755
    545218 6s54:C (2.21) BS01 PLP ? GO:0008483 ... A0A2S8XV37 31681755
    545219 6s54:D (2.21) BS01 PLP ? GO:0008483 ... A0A2S8XV37 31681755
    545220 6s55:A (2.09) BS01 KW5 3.6.1.- N/A Q6PL18 31398032 BindingDB: IC50=631nM
    545221 6s56:A (2.01) BS01 KVZ 3.6.1.- N/A Q6PL18 31398032 BindingDB: IC50=5012nM, Kd=7943nM
    545222 6s57:A (1.82) BS01 KVT 3.6.1.- N/A Q6PL18 31398032 BindingDB: IC50=10000nM, Kd=7943nM
    545223 6s58:D (2.32) BS01 CA ? GO:0003677 ... Q8YYB7 32459314
    545224 6s58:D (2.32) BS02 CA ? GO:0003677 ... Q8YYB7 32459314
    545225 6s5a:A (1.72) BS01 BMA N/A N/A N/A 31504896
    545226 6s5a:D (1.72) BS01 BMA N/A N/A N/A 31504896
    545227 6s5b:A (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    545228 6s5b:B (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    545229 6s5b:C (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    545230 6s5b:D (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    545231 6s5b:E (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    545232 6s5b:F (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    545233 6s5b:G (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    545234 6s5b:H (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    545235 6s5c:A (3.0) BS01 ATP ? GO:0005515 ... O32080 31868587
    545236 6s5c:A (3.0) BS02 CA ? GO:0005515 ... O32080 31868587
    545237 6s5c:A (3.0) BS03 ATP ? GO:0005515 ... O32080 31868587
    545238 6s5c:B (3.0) BS01 CA ? GO:0005515 ... O32080 31868587
    545239 6s5c:B (3.0) BS02 ATP ? GO:0005515 ... O32080 31868587
    545240 6s5d:A (3.393) BS01 ATP ? GO:0005515 ... O32080 31868587
    545241 6s5d:B (3.393) BS01 ATP ? GO:0005515 ... O32080 31868587
    545242 6s5e:A (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    545243 6s5e:B (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    545244 6s5e:C (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    545245 6s5e:D (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    545246 6s5e:E (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    545247 6s5e:F (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    545248 6s5e:G (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    545249 6s5e:H (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    545250 6s5f:A (1.7) BS01 GLY ? GO:0003924 ... Q96DA2 N/A
    545251 6s5f:A (1.7) BS02 GNP ? GO:0003924 ... Q96DA2 N/A
    545252 6s5f:A (1.7) BS03 MG ? GO:0003924 ... Q96DA2 N/A
    545253 6s5g:A (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    545254 6s5g:B (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    545255 6s5g:C (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    545256 6s5g:D (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    545257 6s5g:E (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    545258 6s5g:F (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    545259 6s5g:G (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    545260 6s5g:H (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    545261 6s5h:A (2.0) BS01 GTP ? GO:0003924 ... P57729 N/A
    545262 6s5h:A (2.0) BS02 MG ? GO:0003924 ... P57729 N/A
    545263 6s5j:A (2.42) BS01 KW8 ? N/A Q94LW9 31909617
    545264 6s5k:A (1.6) BS01 KWE ? GO:0003677 ... P55055 31799433 MOAD: Ki=0.00000079M
    545265 6s5m:A (1.9) BS01 KWH ? N/A Q94LW9 31909617
    545266 6s5n:A (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    545267 6s5n:B (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    545268 6s5n:C (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    545269 6s5n:D (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    545270 6s5n:E (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    545271 6s5n:F (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    545272 6s5n:G (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    545273 6s5n:H (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    545274 6s5o:A (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    545275 6s5o:B (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    545276 6s5o:C (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    545277 6s5o:D (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    545278 6s5o:E (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    545279 6s5o:F (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    545280 6s5o:G (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    545281 6s5o:H (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    545282 6s5p:A (1.46) BS01 CA ? GO:0030246 ... Q9HYN5 30830745
    545283 6s5p:A (1.46) BS02 CA ? GO:0030246 ... Q9HYN5 30830745
    545284 6s5p:A (1.46) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    545285 6s5p:B (1.46) BS01 CA ? GO:0030246 ... Q9HYN5 30830745
    545286 6s5p:B (1.46) BS02 CA ? GO:0030246 ... Q9HYN5 30830745
    545287 6s5p:B (1.46) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    545288 6s5p:C (1.46) BS01 CA ? GO:0030246 ... Q9HYN5 30830745
    545289 6s5p:C (1.46) BS02 CA ? GO:0030246 ... Q9HYN5 30830745
    545290 6s5p:C (1.46) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    545291 6s5p:D (1.46) BS01 CA ? GO:0030246 ... Q9HYN5 30830745
    545292 6s5p:D (1.46) BS02 ZDC ? GO:0030246 ... Q9HYN5 30830745
    545293 6s5p:D (1.46) BS03 CA ? GO:0030246 ... Q9HYN5 30830745
    545294 6s5q:A (2.01) BS01 KWQ ? N/A Q94LW9 31909617
    545295 6s5r:A (2.076) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    545296 6s5r:A (2.076) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    545297 6s5r:A (2.076) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    545298 6s5r:B (2.076) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    545299 6s5r:B (2.076) BS02 ZDC ? GO:0030246 ... Q9HYN5 N/A
    545300 6s5r:B (2.076) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    545301 6s5r:C (2.076) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    545302 6s5r:C (2.076) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    545303 6s5r:C (2.076) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    545304 6s5r:D (2.076) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    545305 6s5r:D (2.076) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    545306 6s5r:D (2.076) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    545307 6s5s:A (1.433) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    545308 6s5s:A (1.433) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    545309 6s5s:A (1.433) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    545310 6s5t:A (4.15) BS01 ANP 6.-.-.- GO:0000166 ... Q5ZTK6 31330532
    545311 6s5u:A (2.03) BS01 KWK ? N/A Q94LW9 31909617
    545312 6s5u:A (2.03) BS02 KWK ? N/A Q94LW9 31909617
    545313 6s5u:B (2.03) BS01 KWK ? N/A Q94LW9 31909617
    545314 6s5u:B (2.03) BS02 KWK ? N/A Q94LW9 31909617
    545315 6s5u:C (2.03) BS01 KWK ? N/A Q94LW9 31909617
    545316 6s5u:D (2.03) BS01 KWK ? N/A Q94LW9 31909617
    545317 6s5u:D (2.03) BS02 KWK ? N/A Q94LW9 31909617
    545318 6s5u:E (2.03) BS01 KWK ? N/A Q94LW9 31909617
    545319 6s5u:E (2.03) BS02 KWK ? N/A Q94LW9 31909617
    545320 6s5u:F (2.03) BS01 KWK ? N/A Q94LW9 31909617
    545321 6s5v:AAAA (1.35) BS01 KWN ? N/A Q6E3N3 31647875
    545322 6s5v:ABAA (1.35) BS01 KWN ? N/A Q6E3N3 31647875
    545323 6s5v:ABAA (1.35) BS02 KWN ? N/A Q6E3N3 31647875
    545324 6s60:B (2.0) BS01 KX8 ? N/A Q15562 34509860
    545325 6s61:A (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545326 6s61:B (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545327 6s61:C (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545328 6s61:D (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545329 6s61:E (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545330 6s61:F (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545331 6s61:G (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545332 6s61:H (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545333 6s61:I (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545334 6s61:J (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545335 6s61:K (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545336 6s61:L (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545337 6s61:M (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545338 6s61:N (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545339 6s61:O (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545340 6s61:P (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545341 6s61:Q (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545342 6s61:R (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545343 6s61:S (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545344 6s61:T (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545345 6s61:U (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545346 6s61:V (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545347 6s61:W (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545348 6s61:X (1.84) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 N/A
    545349 6s63:A (1.85) BS01 RET ? GO:0005216 ... P96787 34981761
    545350 6s63:A (1.85) BS02 CA ? GO:0005216 ... P96787 34981761
    545351 6s64:B (2.22) BS01 KXE ? N/A Q15562 34509860
    545352 6s65:A (1.75) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 N/A
    545353 6s65:B (1.75) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 N/A
    545354 6s66:B (2.2) BS01 KWW ? N/A Q15562 34509860
    545355 6s69:B (2.15) BS01 KX5 ? N/A Q15562 34509860
    545356 6s6a:A (2.63) BS01 GTP 3.6.5.- GO:0003924 ... Q7L523 31601764
    545357 6s6a:A (2.63) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 31601764
    545358 6s6a:B (2.63) BS01 GTP 3.6.5.- GO:0003924 ... Q7L523 31601764
    545359 6s6a:B (2.63) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 31601764
    545360 6s6a:B (2.63) BS03 9JE 3.6.5.- GO:0003924 ... Q7L523 31601764
    545361 6s6a:C (2.63) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    545362 6s6a:D (2.63) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    545363 6s6b:D (2.75) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545364 6s6b:E (2.75) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545365 6s6b:F (2.75) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545366 6s6b:G (2.75) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    545367 6s6b:H (2.75) BS01 rna ? N/A F0NDX1 32730741
    545368 6s6b:I (2.75) BS01 rna ? GO:0051607 ... F0NDX3 32730741
    545369 6s6b:J (2.75) BS01 rna ? GO:0051607 ... F0NDX4 32730741
    545370 6s6b:K (2.75) BS01 ZN ? GO:0016020 ... F0NDX2 32730741
    545371 6s6b:W (2.75) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    545372 6s6b:t (2.75) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    545373 6s6c:A (1.07) BS01 RET ? GO:0005216 ... P96787 33504778
    545374 6s6c:A (1.07) BS02 CA ? GO:0005216 ... P96787 33504778
    545375 6s6d:A (2.5) BS01 GTP 3.6.5.- GO:0003924 ... Q7L523 31601764
    545376 6s6d:A (2.5) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 31601764
    545377 6s6d:B (2.5) BS01 GTP 3.6.5.- GO:0003924 ... Q7L523 31601764
    545378 6s6d:B (2.5) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 31601764
    545379 6s6d:B (2.5) BS03 9JE 3.6.5.- GO:0003924 ... Q7L523 31601764
    545380 6s6d:B (2.5) BS04 9JE 3.6.5.- GO:0003924 ... Q7L523 31601764
    545381 6s6d:C (2.5) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    545382 6s6d:D (2.5) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    545383 6s6g:A (1.6) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 34605434
    545384 6s6g:B (1.6) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 34605434
    545385 6s6g:B (1.6) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 34605434
    545386 6s6h:A (2.4) BS01 dna ? GO:0003677 ... B8GW30 32698006
    545387 6s6h:A (2.4) BS02 dna ? GO:0003677 ... B8GW30 32698006
    545388 6s6h:B (2.4) BS01 dna ? GO:0003677 ... B8GW30 32698006
    545389 6s6h:B (2.4) BS02 dna ? GO:0003677 ... B8GW30 32698006
    545390 6s6j:B (2.1) BS01 KXH ? N/A Q15562 34509860
    545391 6s6k:A (1.4) BS01 KXK ? N/A O60885 33275431 MOAD: Kd=0.18uM
    545392 6s6k:A (1.4) BS02 BU3 ? N/A O60885 33275431
    545393 6s6q:A (2.95) BS01 peptide 2.7.11.1 N/A C0LGQ5 31964818
    545394 6s6q:B (2.95) BS01 peptide 2.7.11.1 N/A C0LGQ5 31964818
    545395 6s6r:A (1.58001) BS01 KXQ ? GO:0005778 ... Q8IEW2 N/A
    545396 6s6s:A (3.9) BS01 FMN 1.4.1.13 GO:0004355 ... Q05755 31473159
    545397 6s6s:A (3.9) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    545398 6s6s:B (3.9) BS01 FMN 1.4.1.13 GO:0004355 ... Q05755 31473159
    545399 6s6s:B (3.9) BS02 F3S 1.4.1.13 GO:0004355 ... Q05755 31473159
    545400 6s6s:C (3.9) BS01 FMN 1.4.1.13 GO:0004355 ... Q05755 31473159

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).