SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    547001 6sge:C (1.5) BS03 MG ? GO:0000281 ... P62745 31522999
    547002 6sgf:A (1.756) BS01 XYP 3.2.1.8 N/A C7G9B5 31693302
    547003 6sgf:A (1.756) BS02 XYP 3.2.1.8 N/A C7G9B5 31693302
    547004 6sgf:B (1.756) BS01 XYP 3.2.1.8 N/A C7G9B5 31693302
    547005 6sgf:C (1.756) BS01 XYP 3.2.1.8 N/A C7G9B5 31693302
    547006 6sgf:C (1.756) BS02 XYP 3.2.1.8 N/A C7G9B5 31693302
    547007 6sgf:D (1.756) BS01 XYP 3.2.1.8 N/A C7G9B5 31693302
    547008 6sgf:D (1.756) BS02 XYP 3.2.1.8 N/A C7G9B5 31693302
    547009 6sgf:E (1.756) BS01 XYP 3.2.1.8 N/A C7G9B5 31693302
    547010 6sgf:E (1.756) BS02 XYP 3.2.1.8 N/A C7G9B5 31693302
    547011 6sgf:F (1.756) BS01 XYP 3.2.1.8 N/A C7G9B5 31693302
    547012 6sgf:F (1.756) BS02 XYP 3.2.1.8 N/A C7G9B5 31693302
    547013 6sgg:AAA (1.8) BS01 FMN 1.14.99.46 GO:0004497 ... P75898 32066967
    547014 6sgg:AAA (1.8) BS02 OXY 1.14.99.46 GO:0004497 ... P75898 32066967
    547015 6sgh:A (3.0) BS01 LCW 2.7.11.1 GO:0004672 ... P51955 33479670
    547016 6sgi:A (2.3) BS01 LCB 2.7.11.1 GO:0004672 ... P51955 33479670
    547017 6sgk:A (2.0) BS01 LCQ 2.7.11.1 GO:0004672 ... P51955 33479670
    547018 6sgl:AAA (2.01) BS01 FMN 1.14.99.46 GO:0004497 ... P75898 32066967
    547019 6sgl:AAA (2.01) BS02 URA 1.14.99.46 GO:0004497 ... P75898 32066967
    547020 6sgm:AAA (2.0) BS01 FMN 1.14.99.46 GO:0004497 ... P75898 32066967
    547021 6sgm:AAA (2.0) BS02 LDB 1.14.99.46 GO:0004497 ... P75898 32066967
    547022 6sgn:AAA (2.501) BS01 FMN 1.14.99.46 GO:0004497 ... P75898 32066967
    547023 6sgn:AAA (2.501) BS02 LD8 1.14.99.46 GO:0004497 ... P75898 32066967
    547024 6sgp:A (1.58) BS01 MAN 3.4.17.21 GO:0004180 ... Q04609 38224368
    547025 6sgp:A (1.58) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 38224368
    547026 6sgp:A (1.58) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 38224368
    547027 6sgp:A (1.58) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 38224368
    547028 6sgp:A (1.58) BS05 LDK 3.4.17.21 GO:0004180 ... Q04609 38224368
    547029 6sgv:A (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547030 6sgv:B (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547031 6sgv:C (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547032 6sgv:D (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547033 6sgv:D (2.6) BS02 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547034 6sgv:E (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547035 6sgv:F (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547036 6sgv:G (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547037 6sgv:H (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547038 6sgv:I (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547039 6sgv:J (2.6) BS01 LDQ ? GO:0004888 ... Q8WSF8 N/A
    547040 6sh0:A (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547041 6sh0:B (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547042 6sh0:B (2.5) BS02 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547043 6sh0:C (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547044 6sh0:D (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547045 6sh0:D (2.5) BS02 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547046 6sh0:E (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547047 6sh0:E (2.5) BS02 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547048 6sh0:F (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547049 6sh0:G (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547050 6sh0:G (2.5) BS02 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547051 6sh0:H (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547052 6sh0:I (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547053 6sh0:J (2.5) BS01 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547054 6sh0:J (2.5) BS02 4P0 ? GO:0004888 ... Q8WSF8 N/A
    547055 6sh1:AAA (2.1) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 31514225
    547056 6sh1:CCC (2.1) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 31514225
    547057 6sh2:AAA (2.6) BS01 peptide 3.4.24.11 GO:0001786 ... P08473 31514225
    547058 6sh2:AAA (2.6) BS02 ZN 3.4.24.11 GO:0001786 ... P08473 31514225
    547059 6sh3:A (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    547060 6sh3:B (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    547061 6sh3:C (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    547062 6sh3:D (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    547063 6sh3:E (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    547064 6sh3:F (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    547065 6sh3:G (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    547066 6sh6:A (1.85) BS01 ADP 3.6.4.13 GO:0003676 ... O43143 32179686
    547067 6sh8:A (3.14) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547068 6sh8:B (3.14) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547069 6sh8:C (3.14) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547070 6sh8:D (3.14) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547071 6sh8:D (3.14) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547072 6sh8:E (3.14) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547073 6sh8:E (3.14) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547074 6sh8:F (3.14) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547075 6sh8:F (3.14) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547076 6sh8:G (3.14) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547077 6sh8:G (3.14) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547078 6sh8:H (3.14) BS01 rna ? N/A F0NDX1 32730741
    547079 6sh8:I (3.14) BS01 rna ? GO:0051607 ... F0NDX3 32730741
    547080 6sh8:I (3.14) BS02 rna ? GO:0051607 ... F0NDX3 32730741
    547081 6sh8:J (3.14) BS01 rna ? GO:0051607 ... F0NDX4 32730741
    547082 6sh8:J (3.14) BS02 rna ? GO:0051607 ... F0NDX4 32730741
    547083 6sh8:K (3.14) BS01 rna ? GO:0016020 ... F0NDX2 32730741
    547084 6sh8:K (3.14) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    547085 6sh8:K (3.14) BS03 ANP ? GO:0016020 ... F0NDX2 32730741
    547086 6sh8:K (3.14) BS04 ANP ? GO:0016020 ... F0NDX2 32730741
    547087 6sh8:K (3.14) BS05 MN ? GO:0016020 ... F0NDX2 32730741
    547088 6sh8:K (3.14) BS06 MN ? GO:0016020 ... F0NDX2 32730741
    547089 6sh8:t (3.14) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    547090 6sh9:B (2.4) BS01 peptide 3.2.1.97 GO:0030246 ... Q3T552 31645583
    547091 6sh9:B (2.4) BS02 MN 3.2.1.97 GO:0030246 ... Q3T552 31645583
    547092 6sh9:B (2.4) BS03 MN 3.2.1.97 GO:0030246 ... Q3T552 31645583
    547093 6sh9:B (2.4) BS04 MN 3.2.1.97 GO:0030246 ... Q3T552 31645583
    547094 6sh9:B (2.4) BS05 MN 3.2.1.97 GO:0030246 ... Q3T552 31645583
    547095 6shb:A (3.07) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547096 6shb:B (3.07) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547097 6shb:C (3.07) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547098 6shb:D (3.07) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547099 6shb:D (3.07) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547100 6shb:E (3.07) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547101 6shb:E (3.07) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547102 6shb:F (3.07) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547103 6shb:F (3.07) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547104 6shb:G (3.07) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547105 6shb:G (3.07) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547106 6shb:H (3.07) BS01 rna ? N/A F0NDX1 32730741
    547107 6shb:H (3.07) BS02 rna ? N/A F0NDX1 32730741
    547108 6shb:I (3.07) BS01 rna ? GO:0051607 ... F0NDX3 32730741
    547109 6shb:I (3.07) BS02 rna ? GO:0051607 ... F0NDX3 32730741
    547110 6shb:J (3.07) BS01 rna ? GO:0051607 ... F0NDX4 32730741
    547111 6shb:J (3.07) BS02 rna ? GO:0051607 ... F0NDX4 32730741
    547112 6shb:K (3.07) BS01 rna ? GO:0016020 ... F0NDX2 32730741
    547113 6shb:K (3.07) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    547114 6shb:K (3.07) BS03 ANP ? GO:0016020 ... F0NDX2 32730741
    547115 6shb:K (3.07) BS04 ANP ? GO:0016020 ... F0NDX2 32730741
    547116 6shb:K (3.07) BS05 MN ? GO:0016020 ... F0NDX2 32730741
    547117 6shb:W (3.07) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    547118 6shb:t (3.07) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    547119 6shh:A (2.0) BS01 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547120 6shh:A (2.0) BS02 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547121 6shh:B (2.0) BS01 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547122 6shh:B (2.0) BS02 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547123 6shh:C (2.0) BS01 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547124 6shh:C (2.0) BS02 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547125 6shh:D (2.0) BS01 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547126 6shh:D (2.0) BS02 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547127 6shh:E (2.0) BS01 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547128 6shh:F (2.0) BS01 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547129 6shh:G (2.0) BS01 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547130 6shh:H (2.0) BS01 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547131 6shh:H (2.0) BS02 SH7 3.4.21.117 GO:0001533 ... P49862 32374603
    547132 6shi:A (1.85) BS01 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547133 6shi:A (1.85) BS02 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547134 6shi:B (1.85) BS01 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547135 6shi:B (1.85) BS02 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547136 6shi:C (1.85) BS01 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547137 6shi:C (1.85) BS02 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547138 6shi:D (1.85) BS01 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547139 6shi:D (1.85) BS02 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547140 6shi:E (1.85) BS01 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547141 6shi:E (1.85) BS02 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547142 6shi:F (1.85) BS01 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547143 6shi:G (1.85) BS01 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547144 6shi:H (1.85) BS01 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547145 6shi:H (1.85) BS02 SH8 3.4.21.117 GO:0001533 ... P49862 32374603
    547146 6shj:A (3.2) BS01 FBP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547147 6shj:B (3.2) BS01 FBP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547148 6shj:C (3.2) BS01 FBP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547149 6shj:D (3.2) BS01 FBP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547150 6shk:A (1.992) BS01 ZN 3.4.-.- GO:0005576 ... P81605 N/A
    547151 6shk:A (1.992) BS02 ZN 3.4.-.- GO:0005576 ... P81605 N/A
    547152 6shm:A (1.9) BS01 MAN N/A GO:0005975 ... N/A 35414716
    547153 6shm:A (1.9) BS02 MAN N/A GO:0005975 ... N/A 35414716
    547154 6shm:A (1.9) BS03 MAN N/A GO:0005975 ... N/A 35414716
    547155 6shn:C (3.3) BS01 FBP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547156 6shn:D (3.3) BS01 FBP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547157 6sho:A (3.20008) BS01 ZN ? GO:0000228 ... O15392 31692460
    547158 6sho:B (3.20008) BS01 ZN ? GO:0000228 ... O15392 31692460
    547159 6shq:A (3.2) BS01 AMP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547160 6shq:B (3.2) BS01 AMP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547161 6shq:C (3.2) BS01 AMP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547162 6shq:D (3.2) BS01 AMP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547163 6sht:A (2.73) BS01 MG 1.16.3.1 GO:0004322 ... P09528 32374767
    547164 6shu:A (1.43003) BS01 ADN ? GO:0005886 ... P0CL55 31988175
    547165 6shv:A (1.808) BS01 LDW ? GO:0004659 ... Q8WS26 N/A
    547166 6shv:A (1.808) BS02 LDW ? GO:0004659 ... Q8WS26 N/A
    547167 6shv:A (1.808) BS03 ZN ? GO:0004659 ... Q8WS26 N/A
    547168 6shx:B (2.4) BS01 ZN ? GO:0005524 ... Q12083 34088835
    547169 6shz:A (1.24) BS01 ZN ? GO:0000976 ... P04637 31990523
    547170 6shz:B (1.24) BS01 ZN ? GO:0000976 ... P04637 31990523
    547171 6si0:A (1.53) BS01 ZN ? GO:0000976 ... P04637 31990523
    547172 6si0:A (1.53) BS02 LEK ? GO:0000976 ... P04637 31990523 MOAD: Kd=5.3uM
    547173 6si0:B (1.53) BS01 ZN ? GO:0000976 ... P04637 31990523
    547174 6si0:B (1.53) BS02 LEK ? GO:0000976 ... P04637 31990523 MOAD: Kd=5.3uM
    547175 6si1:A (1.44) BS01 ZN ? GO:0000976 ... P04637 31990523
    547176 6si1:B (1.44) BS01 ZN ? GO:0000976 ... P04637 31990523
    547177 6si2:A (1.5) BS01 ZN ? GO:0000976 ... P04637 31990523
    547178 6si2:B (1.5) BS01 ZN ? GO:0000976 ... P04637 31990523
    547179 6si3:A (1.4) BS01 ZN ? GO:0000976 ... P04637 31990523
    547180 6si3:A (1.4) BS02 LEB ? GO:0000976 ... P04637 31990523 MOAD: Kd=4uM
    547181 6si3:B (1.4) BS01 ZN ? GO:0000976 ... P04637 31990523
    547182 6si3:B (1.4) BS02 LEB ? GO:0000976 ... P04637 31990523 MOAD: Kd=4uM
    547183 6si4:A (1.8) BS01 ZN ? GO:0000976 ... P04637 31990523
    547184 6si4:A (1.8) BS02 LEK ? GO:0000976 ... P04637 31990523 MOAD: Kd=5.9uM
    547185 6si4:B (1.8) BS01 ZN ? GO:0000976 ... P04637 31990523
    547186 6si4:B (1.8) BS02 LEK ? GO:0000976 ... P04637 31990523 MOAD: Kd=5.9uM
    547187 6si5:A (2.097) BS01 LEQ ? GO:0004659 ... Q8WS26 N/A
    547188 6si8:A (3.4) BS01 AMP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547189 6si8:B (3.4) BS01 AMP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547190 6si8:C (3.4) BS01 AMP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547191 6si8:D (3.4) BS01 AMP 2.7.7.27 GO:0000287 ... P0A6V1 34235472
    547192 6si9:A (1.9) BS01 GDP ? GO:0003924 ... P0A031 31997533 MOAD: Kd=18.2nM
    547193 6si9:A (1.9) BS02 EDO ? GO:0003924 ... P0A031 31997533
    547194 6si9:A (1.9) BS03 CA ? GO:0003924 ... P0A031 31997533
    547195 6sic:A (3.52) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547196 6sic:B (3.52) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547197 6sic:C (3.52) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    547198 6sic:D (3.52) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    547199 6sic:D (3.52) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    547200 6sic:E (3.52) BS01 rna ? GO:0051607 ... F0NDX6 32730741

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).