SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    548201 6smo:E (2.7) BS01 LKZ ? GO:0004315 ... Q7MZT4 32632186
    548202 6smo:F (2.7) BS01 LKZ ? GO:0004315 ... Q7MZT3 32632186
    548203 6smp:B (2.9) BS01 LLE ? GO:0004315 ... Q7MZT3 32632186
    548204 6smp:C (2.9) BS01 LLE ? GO:0004315 ... Q7MZT4 32632186
    548205 6smp:E (2.9) BS01 LLE ? GO:0004315 ... Q7MZT3 32632186
    548206 6smp:F (2.9) BS01 LLE ? GO:0004315 ... Q7MZT4 32632186
    548207 6smp:H (2.9) BS01 LLE ? GO:0004315 ... Q7MZT3 32632186
    548208 6smp:I (2.9) BS01 LLE ? GO:0004315 ... Q7MZT4 32632186
    548209 6smp:K (2.9) BS01 LLE ? GO:0004315 ... Q7MZT3 32632186
    548210 6smp:L (2.9) BS01 LLE ? GO:0004315 ... Q7MZT4 32632186
    548211 6smq:A (3.3) BS01 peptide ? GO:0009279 ... F5H948 32393857
    548212 6smq:B (3.3) BS01 peptide ? GO:0009279 ... Q7MXJ7 32393857
    548213 6smq:B (3.3) BS02 5PL ? GO:0009279 ... Q7MXJ7 32393857
    548214 6smq:E (3.3) BS01 5PL ? GO:0009279 ... Q7MXJ7 32393857
    548215 6smq:E (3.3) BS02 C8E ? GO:0009279 ... Q7MXJ7 32393857
    548216 6smr:A (2.12) BS01 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    548217 6smr:A (2.12) BS02 MTX 2.1.2.1 GO:0004372 ... O23254 31873125 MOAD: Ki=179.3uM
    548218 6smr:A (2.12) BS03 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    548219 6smr:B (2.12) BS01 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    548220 6smr:B (2.12) BS02 MTX 2.1.2.1 GO:0004372 ... O23254 31873125 MOAD: Ki=179.3uM
    548221 6smr:B (2.12) BS03 MTX 2.1.2.1 GO:0004372 ... O23254 31873125 MOAD: Ki=179.3uM
    548222 6smr:B (2.12) BS04 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    548223 6smr:C (2.12) BS01 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    548224 6smr:C (2.12) BS02 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    548225 6smr:D (2.12) BS01 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    548226 6smr:D (2.12) BS02 PLS 2.1.2.1 GO:0004372 ... O23254 31873125
    548227 6smr:D (2.12) BS03 MTX 2.1.2.1 GO:0004372 ... O23254 31873125 MOAD: Ki=179.3uM
    548228 6sms:A (1.47) BS01 CA N/A GO:0005576 ... N/A N/A
    548229 6sms:A (1.47) BS02 CA N/A GO:0005576 ... N/A N/A
    548230 6sms:A (1.47) BS03 CA N/A GO:0005576 ... N/A N/A
    548231 6smt:A (1.55) BS01 NDP ? GO:0000166 ... A0R5X0 32751900
    548232 6smt:A (1.55) BS02 2EH ? GO:0000166 ... A0R5X0 32751900
    548233 6smt:A (1.55) BS03 2EH ? GO:0000166 ... A0R5X0 32751900
    548234 6smt:B (1.55) BS01 2EH ? GO:0000166 ... A0R5X0 32751900
    548235 6smt:B (1.55) BS02 NDP ? GO:0000166 ... A0R5X0 32751900
    548236 6smt:B (1.55) BS03 2EH ? GO:0000166 ... A0R5X0 32751900
    548237 6smt:C (1.55) BS01 NDP ? GO:0000166 ... A0R5X0 32751900
    548238 6smt:C (1.55) BS02 2EH ? GO:0000166 ... A0R5X0 32751900
    548239 6smt:D (1.55) BS01 NDP ? GO:0000166 ... A0R5X0 32751900
    548240 6smt:D (1.55) BS02 2EH ? GO:0000166 ... A0R5X0 32751900
    548241 6smt:E (1.55) BS01 NDP ? GO:0000166 ... A0R5X0 32751900
    548242 6smt:E (1.55) BS02 2EH ? GO:0000166 ... A0R5X0 32751900
    548243 6smv:A (2.14) BS01 GLC ? GO:0003677 ... P0AEX9
    P36813
    Q92585
    N/A
    548244 6smv:A (2.14) BS02 GLC ? GO:0003677 ... P0AEX9
    P36813
    Q92585
    N/A
    548245 6smv:A (2.14) BS03 GLC ? GO:0003677 ... P0AEX9
    P36813
    Q92585
    N/A
    548246 6smv:A (2.14) BS04 GLC ? GO:0003677 ... P0AEX9
    P36813
    Q92585
    N/A
    548247 6smv:A (2.14) BS05 ZN ? GO:0003677 ... P0AEX9
    P36813
    Q92585
    N/A
    548248 6smv:A (2.14) BS06 ZN ? GO:0003677 ... P0AEX9
    P36813
    Q92585
    N/A
    548249 6smw:A (1.54) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548250 6smw:A (1.54) BS02 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548251 6smw:B (1.54) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548252 6smw:B (1.54) BS02 LYA 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548253 6smw:B (1.54) BS03 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548254 6smw:C (1.54) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548255 6smw:C (1.54) BS02 LYA 2.1.2.1 GO:0004372 ... Q94C74 31873125 MOAD: Ki=119.4uM
    548256 6smw:C (1.54) BS03 SER 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548257 6smw:C (1.54) BS04 LYA 2.1.2.1 GO:0004372 ... Q94C74 31873125 MOAD: Ki=119.4uM
    548258 6smw:C (1.54) BS05 PLP 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548259 6smw:D (1.54) BS01 PLS 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548260 6smw:D (1.54) BS02 SER 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548261 6smw:D (1.54) BS03 LYA 2.1.2.1 GO:0004372 ... Q94C74 31873125 MOAD: Ki=119.4uM
    548262 6smw:D (1.54) BS04 PLP 2.1.2.1 GO:0004372 ... Q94C74 31873125
    548263 6smy:A (2.45) BS01 LLQ 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548264 6smy:B (2.45) BS01 LLQ 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548265 6smy:C (2.45) BS01 NAD 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548266 6smy:C (2.45) BS02 LLQ 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548267 6smy:D (2.45) BS01 NAD 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548268 6smy:D (2.45) BS02 LLQ 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548269 6smz:A (1.75) BS01 NAD 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548270 6smz:B (1.75) BS01 NAD 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548271 6smz:C (1.75) BS01 NAD 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548272 6smz:D (1.75) BS01 NAD 1.1.1.373
    1.1.1.61
    GO:0009407 ... P0A9V8 N/A
    548273 6sn6:A (1.93) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    548274 6sn6:A (1.93) BS02 3K0 3.4.17.18 GO:0004181 ... P29068 N/A
    548275 6sn6:A (1.93) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    548276 6sn6:A (1.93) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    548277 6sn6:A (1.93) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    548278 6sna:A (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    548279 6sna:B (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    548280 6sna:F (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    548281 6sna:G (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    548282 6sna:J (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    548283 6sna:K (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    548284 6sna:N (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    548285 6sna:X (2.7) BS01 MN ? GO:0003697 ... Q6I6B2 32348296
    548286 6snc:A (3.2) BS01 peptide N/A N/A N/A 31653484
    548287 6snc:B (3.2) BS01 peptide N/A N/A N/A 31653484
    548288 6snc:H (3.2) BS01 peptide N/A N/A N/A 31653484
    548289 6snc:H (3.2) BS02 DPV N/A N/A N/A 31653484
    548290 6snc:L (3.2) BS01 peptide N/A N/A N/A 31653484
    548291 6snc:L (3.2) BS02 PC N/A N/A N/A 31653484
    548292 6snd:A (3.1) BS01 peptide N/A N/A N/A 31653484
    548293 6snd:B (3.1) BS01 peptide N/A N/A N/A 31653484
    548294 6snd:H (3.1) BS01 peptide N/A N/A N/A 31653484
    548295 6snd:H (3.1) BS02 PSF N/A N/A N/A 31653484
    548296 6snd:L (3.1) BS01 peptide N/A N/A N/A 31653484
    548297 6snd:L (3.1) BS02 PC N/A N/A N/A 31653484
    548298 6sne:A (3.9) BS01 PC N/A N/A N/A 31653484
    548299 6sne:B (3.9) BS01 PC N/A N/A N/A 31653484
    548300 6sne:C (3.9) BS01 PC N/A N/A N/A 31653484
    548301 6sne:E (3.9) BS01 PC N/A N/A N/A 31653484
    548302 6sne:H (3.9) BS01 PC N/A N/A N/A 31653484
    548303 6sne:H (3.9) BS02 PC N/A N/A N/A 31653484
    548304 6sne:J (3.9) BS01 PC ? GO:0005198 ... P04578 31653484
    548305 6sne:L (3.9) BS01 PC N/A N/A N/A 31653484
    548306 6snh:H (3.9) BS01 LMH N/A N/A N/A 32103179
    548307 6snh:X (3.9) BS01 LMH 2.4.1.267 GO:0005783 ... Q12001 32103179
    548308 6sni:H (3.0) BS01 Y01 N/A N/A N/A 32103179
    548309 6sni:X (3.0) BS01 Y01 2.4.1.267 GO:0005783 ... Q12001 32103179
    548310 6sni:X (3.0) BS02 Y01 2.4.1.267 GO:0005783 ... Q12001 32103179
    548311 6sni:X (3.0) BS03 Y01 2.4.1.267 GO:0005783 ... Q12001 32103179
    548312 6snj:A (-1.00) BS01 rna ? GO:0003676 ... P35637 33311468
    548313 6snl:A (3.129) BS01 PLP ? GO:0003824 ... A0A0D1XFW6 33242357
    548314 6snl:B (3.129) BS01 PLP ? GO:0003824 ... A0A0D1XFW6 33242357
    548315 6snl:C (3.129) BS01 PLP ? GO:0003824 ... A0A0D1XFW6 33242357
    548316 6snl:D (3.129) BS01 PLP ? GO:0003824 ... A0A0D1XFW6 33242357
    548317 6snl:E (3.129) BS01 PLP ? GO:0003824 ... A0A0D1XFW6 33242357
    548318 6snl:F (3.129) BS01 PLP ? GO:0003824 ... A0A0D1XFW6 33242357
    548319 6snn:A (1.817) BS01 BEZ 2.7.11.11 GO:0000287 ... P25321 33021032
    548320 6sno:A (2.7) BS01 ZN 5.4.2.2 GO:0000287 ... P36871 32221390
    548321 6sno:A (2.7) BS02 G1P 5.4.2.2 GO:0000287 ... P36871 32221390
    548322 6snp:A (2.75) BS01 MG 5.4.2.2 GO:0000287 ... P36871 32221390
    548323 6snq:A (2.7) BS01 ZN 5.4.2.2 GO:0000287 ... P36871 32221390
    548324 6snq:A (2.7) BS02 G6P 5.4.2.2 GO:0000287 ... P36871 32221390
    548325 6sns:B (2.6) BS01 ZN ? GO:0005524 ... Q12083 34088835
    548326 6snt:A (2.8) BS01 rna ? GO:0000028 ... P32905 32203490
    548327 6snt:AB (2.8) BS01 rna ? GO:0002181 ... P0CX41 32203490
    548328 6snt:B (2.8) BS01 rna ? GO:0000462 ... P33442 32203490
    548329 6snt:C (2.8) BS01 rna ? GO:0000054 ... P25443 32203490
    548330 6snt:D (2.8) BS01 rna ? GO:0000054 ... P05750 32203490
    548331 6snt:E (2.8) BS01 rna ? GO:0002181 ... P0CX35 32203490
    548332 6snt:F (2.8) BS01 rna ? GO:0000028 ... P26783 32203490
    548333 6snt:F (2.8) BS02 rna ? GO:0000028 ... P26783 32203490
    548334 6snt:F (2.8) BS03 MG ? GO:0000028 ... P26783 32203490
    548335 6snt:G (2.8) BS01 rna ? GO:0000462 ... P0CX37 32203490
    548336 6snt:H (2.8) BS01 rna ? GO:0002181 ... P26786 32203490
    548337 6snt:I (2.8) BS01 rna ? GO:0000462 ... P0CX39 32203490
    548338 6snt:I (2.8) BS02 rna ? GO:0000462 ... P0CX39 32203490
    548339 6snt:J (2.8) BS01 rna ? GO:0000462 ... O13516 32203490
    548340 6snt:K (2.8) BS01 rna ? GO:0000054 ... Q08745 32203490
    548341 6snt:L (2.8) BS01 rna ? GO:0000028 ... P0CX47 32203490
    548342 6snt:M (2.8) BS01 rna ? GO:0000028 ... P48589 32203490
    548343 6snt:N (2.8) BS01 rna ? GO:0000462 ... P05756 32203490
    548344 6snt:O (2.8) BS01 rna ? GO:0000028 ... P06367 32203490
    548345 6snt:P (2.8) BS01 rna ? GO:0000028 ... Q01855 32203490
    548346 6snt:Q (2.8) BS01 rna ? GO:0000462 ... P0CX51 32203490
    548347 6snt:R (2.8) BS01 rna ? GO:0000028 ... P14127 32203490
    548348 6snt:S (2.8) BS01 rna ? GO:0000054 ... P0CX55 32203490
    548349 6snt:T (2.8) BS01 rna ? GO:0000028 ... P07280 32203490
    548350 6snt:U (2.8) BS01 rna ? GO:0000462 ... P38701 32203490
    548351 6snt:V (2.8) BS01 rna ? GO:0000447 ... P0C0V8 32203490
    548352 6snt:W (2.8) BS01 rna ? GO:0002181 ... P0C0W1 32203490
    548353 6snt:X (2.8) BS01 rna ? GO:0000462 ... P0CX29 32203490
    548354 6snt:Y (2.8) BS01 rna ? GO:0000462 ... P0CX31 32203490
    548355 6snt:Z (2.8) BS01 rna ? GO:0002181 ... Q3E792 32203490
    548356 6snt:a (2.8) BS01 rna ? GO:0000054 ... P39938 32203490
    548357 6snt:a (2.8) BS02 rna ? GO:0000054 ... P39938 32203490
    548358 6snt:aa (2.8) BS01 rna ? GO:0002181 ... P0CX25 32203490
    548359 6snt:aa (2.8) BS02 ZN ? GO:0002181 ... P0CX25 32203490
    548360 6snt:ab (2.8) BS01 rna ? GO:0002181 ... P0CX27 32203490
    548361 6snt:ab (2.8) BS02 ZN ? GO:0002181 ... P0CX27 32203490
    548362 6snt:ad (2.8) BS01 rna ? GO:0000027 ... P0CH08 32203490
    548363 6snt:ad (2.8) BS02 ZN ? GO:0000027 ... P0CH08 32203490
    548364 6snt:ae (2.8) BS01 rna ? GO:0002181 ... P04650 32203490
    548365 6snt:ae (2.8) BS02 rna ? GO:0002181 ... P04650 32203490
    548366 6snt:af (2.8) BS01 rna ? GO:0002181 ... P49167 32203490
    548367 6snt:ag (2.8) BS01 rna ? GO:0000448 ... P49166 32203490
    548368 6snt:ag (2.8) BS02 rna ? GO:0000448 ... P49166 32203490
    548369 6snt:ag (2.8) BS03 ZN ? GO:0000448 ... P49166 32203490
    548370 6snt:ah (2.8) BS01 rna ? GO:0002181 ... P05745 32203490
    548371 6snt:ai (2.8) BS01 rna ? GO:0000463 ... P0CX84 32203490
    548372 6snt:ai (2.8) BS02 rna ? GO:0000463 ... P0CX84 32203490
    548373 6snt:aj (2.8) BS01 rna ? GO:0002181 ... P87262 32203490
    548374 6snt:aj (2.8) BS02 ZN ? GO:0002181 ... P87262 32203490
    548375 6snt:ak (2.8) BS01 rna ? GO:0000027 ... P05744 32203490
    548376 6snt:al (2.8) BS01 rna ? GO:0002181 ... P38061 32203490
    548377 6snt:am (2.8) BS01 rna ? GO:0002181 ... P0C2H8 32203490
    548378 6snt:an (2.8) BS01 rna ? GO:0002181 ... P14120 32203490
    548379 6snt:ao (2.8) BS01 rna ? GO:0002181 ... P05747 32203490
    548380 6snt:ap (2.8) BS01 rna ? GO:0002181 ... P02406 32203490
    548381 6snt:aq (2.8) BS01 rna ? GO:0002181 ... P0C2H6 32203490
    548382 6snt:ar (2.8) BS01 rna ? GO:0002181 ... P05743 32203490
    548383 6snt:ar (2.8) BS02 rna ? GO:0002181 ... P05743 32203490
    548384 6snt:as (2.8) BS01 rna ? GO:0000027 ... P04456 32203490
    548385 6snt:as (2.8) BS02 rna ? GO:0000027 ... P04456 32203490
    548386 6snt:at (2.8) BS01 rna ? GO:0002181 ... P04449 32203490
    548387 6snt:at (2.8) BS02 rna ? GO:0002181 ... P04449 32203490
    548388 6snt:au (2.8) BS01 rna ? GO:0002181 ... P05749 32203490
    548389 6snt:b (2.8) BS01 rna ? GO:0000028 ... P35997 32203490
    548390 6snt:c (2.8) BS01 rna ? GO:0000028 ... P0C0X0 32203490
    548391 6snt:c (2.8) BS02 rna ? GO:0000028 ... P0C0X0 32203490
    548392 6snt:d (2.8) BS01 rna ? GO:0002181 ... P41057 32203490
    548393 6snt:d (2.8) BS02 ZN ? GO:0002181 ... P41057 32203490
    548394 6snt:e (2.8) BS01 rna ? GO:0002181 ... P0CX33 32203490
    548395 6snt:f (2.8) BS01 rna ? GO:0000028 ... P05759 32203490
    548396 6snt:f (2.8) BS02 ZN ? GO:0000028 ... P05759 32203490
    548397 6snt:g (2.8) BS01 rna ? GO:0001965 ... P38011 32203490
    548398 6snt:h (2.8) BS01 rna ? GO:0002181 ... P0CX45 32203490
    548399 6snt:h (2.8) BS02 rna ? GO:0002181 ... P0CX45 32203490
    548400 6snt:i (2.8) BS01 rna ? GO:0000027 ... P14126 32203490

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).