SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    548401 6snt:j (2.8) BS01 rna ? GO:0002181 ... P10664 32203490
    548402 6snt:j (2.8) BS02 rna ? GO:0002181 ... P10664 32203490
    548403 6snt:k (2.8) BS01 rna ? GO:0000027 ... P26321 32203490
    548404 6snt:k (2.8) BS02 rna ? GO:0000027 ... P26321 32203490
    548405 6snt:l (2.8) BS01 rna ? GO:0000027 ... P05739 32203490
    548406 6snt:m (2.8) BS01 rna ? GO:0000463 ... P05737 32203490
    548407 6snt:m (2.8) BS02 rna ? GO:0000463 ... P05737 32203490
    548408 6snt:n (2.8) BS01 rna ? GO:0000470 ... P17076 32203490
    548409 6snt:n (2.8) BS02 rna ? GO:0000470 ... P17076 32203490
    548410 6snt:o (2.8) BS01 rna ? GO:0002181 ... P05738 32203490
    548411 6snt:p (2.8) BS01 rna ? GO:0000027 ... P41805 32203490
    548412 6snt:p (2.8) BS02 rna ? GO:0000027 ... P41805 32203490
    548413 6snt:p (2.8) BS03 rna ? GO:0000027 ... P41805 32203490
    548414 6snt:q (2.8) BS01 rna ? GO:0000027 ... P0C0W9 32203490
    548415 6snt:q (2.8) BS02 rna ? GO:0000027 ... P0C0W9 32203490
    548416 6snt:q (2.8) BS03 rna ? GO:0000027 ... P0C0W9 32203490
    548417 6snt:r (2.8) BS01 rna ? GO:0002181 ... Q12690 32203490
    548418 6snt:r (2.8) BS02 rna ? GO:0002181 ... Q12690 32203490
    548419 6snt:s (2.8) BS01 rna ? GO:0000027 ... P36105 32203490
    548420 6snt:t (2.8) BS01 rna ? GO:0002181 ... P05748 32203490
    548421 6snt:t (2.8) BS02 rna ? GO:0002181 ... P05748 32203490
    548422 6snt:u (2.8) BS01 rna ? GO:0000470 ... P26784 32203490
    548423 6snt:v (2.8) BS01 rna ? GO:0000448 ... P05740 32203490
    548424 6snt:v (2.8) BS02 rna ? GO:0000448 ... P05740 32203490
    548425 6snt:w (2.8) BS01 rna ? GO:0002181 ... P0CX49 32203490
    548426 6snt:x (2.8) BS01 rna ? GO:0002181 ... P0CX82 32203490
    548427 6snt:x (2.8) BS02 rna ? GO:0002181 ... P0CX82 32203490
    548428 6snt:y (2.8) BS01 rna ? GO:0002181 ... P0CX23 32203490
    548429 6snt:y (2.8) BS02 rna ? GO:0002181 ... P0CX23 32203490
    548430 6snt:z (2.8) BS01 rna ? GO:0002181 ... Q02753 32203490
    548431 6snt:z (2.8) BS02 rna ? GO:0002181 ... Q02753 32203490
    548432 6snu:A (2.0) BS01 PLP 2.6.1.- GO:0005829 ... A0A1R0MXM9 N/A
    548433 6snu:A (2.0) BS02 PLP 2.6.1.- GO:0005829 ... A0A1R0MXM9 N/A
    548434 6snu:B (2.0) BS01 PLP 2.6.1.- GO:0005829 ... A0A1R0MXM9 N/A
    548435 6snu:B (2.0) BS02 PLP 2.6.1.- GO:0005829 ... A0A1R0MXM9 N/A
    548436 6snu:C (2.0) BS01 PLP 2.6.1.- GO:0005829 ... A0A1R0MXM9 N/A
    548437 6snu:C (2.0) BS02 PLP 2.6.1.- GO:0005829 ... A0A1R0MXM9 N/A
    548438 6snu:D (2.0) BS01 PLP 2.6.1.- GO:0005829 ... A0A1R0MXM9 N/A
    548439 6snu:D (2.0) BS02 PLP 2.6.1.- GO:0005829 ... A0A1R0MXM9 N/A
    548440 6snv:B (2.5) BS01 ZN ? GO:0005524 ... Q12083 34088835
    548441 6snv:B (2.5) BS02 ZN ? GO:0005524 ... Q12083 34088835
    548442 6snv:E (2.5) BS01 ZN ? GO:0005524 ... Q12083 34088835
    548443 6snv:E (2.5) BS02 ZN ? GO:0005524 ... Q12083 34088835
    548444 6snx:A (1.4) BS01 UNU 2.7.11.11 GO:0000287 ... P25321 33021032
    548445 6snx:A (1.4) BS02 UNU 2.7.11.11 GO:0000287 ... P25321 33021032
    548446 6so1:A (1.66) BS01 LO5 2.7.11.24 GO:0000077 ... P47811 32543856
    548447 6so1:A (1.66) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    548448 6so2:A (1.6) BS01 JGG 2.7.11.24 GO:0000077 ... P47811 32543856
    548449 6so2:A (1.6) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    548450 6so4:A (1.51) BS01 LO8 2.7.11.24 GO:0000077 ... P47811 32543856
    548451 6so4:A (1.51) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    548452 6so5:A (4.2) BS01 ZN 3.6.-.- GO:0005515 ... O43681 32910895
    548453 6so9:A (-1.00) BS01 rna ? GO:0003676 ... Q3UQS8 32187365
    548454 6sod:A (1.87) BS01 LOE 2.7.11.24 GO:0000077 ... P47811 32543856
    548455 6sod:A (1.87) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    548456 6sof:A (4.3) BS01 peptide 2.7.10.1 N/A P06213 31727777
    548457 6sof:A (4.3) BS02 peptide 2.7.10.1 N/A P06213 31727777
    548458 6sof:C (4.3) BS01 peptide 2.7.10.1 N/A P06213 31727777
    548459 6sof:C (4.3) BS02 peptide 2.7.10.1 N/A P06213 31727777
    548460 6sof:F (4.3) BS01 peptide ? GO:0005179 ... P01308 31727777
    548461 6sof:H (4.3) BS01 peptide ? GO:0005179 ... P01308 31727777
    548462 6sof:J (4.3) BS01 peptide ? GO:0005179 ... P01308 31727777
    548463 6sof:L (4.3) BS01 peptide ? GO:0005179 ... P01308 31727777
    548464 6soi:A (1.55) BS01 LOK 2.7.11.24 GO:0000077 ... P47811 32543856
    548465 6soi:A (1.55) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    548466 6sok:A (1.96) BS01 peptide ? GO:0009374 ... P22629 33639211
    548467 6sok:B (1.96) BS01 peptide ? GO:0009374 ... P22629 33639211
    548468 6sok:C (1.96) BS01 peptide ? GO:0009374 ... P22629 33639211
    548469 6sok:D (1.96) BS01 peptide ? GO:0009374 ... P22629 33639211
    548470 6son:A (1.6) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    548471 6son:A (1.6) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    548472 6soo:A (1.57) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    548473 6soo:A (1.57) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    548474 6soq:A (1.67) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    548475 6soq:A (1.67) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    548476 6sor:A (1.74) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    548477 6sor:A (1.74) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    548478 6sos:A (2.2) BS01 peptide ? GO:0009374 ... P22629 33639211
    548479 6sos:B (2.2) BS01 peptide ? GO:0009374 ... P22629 33639211
    548480 6sos:C (2.2) BS01 peptide ? GO:0009374 ... P22629 33639211
    548481 6sos:D (2.2) BS01 peptide ? GO:0009374 ... P22629 33639211
    548482 6sot:A (1.54) BS01 LOQ 2.7.11.24 GO:0000077 ... P47811 32543856
    548483 6sot:A (1.54) BS02 MG 2.7.11.24 GO:0000077 ... P47811 32543856
    548484 6sou:A (1.5) BS01 LPZ 2.7.11.24 GO:0000077 ... P47811 32543856
    548485 6sou:A (1.5) BS02 LPZ 2.7.11.24 GO:0000077 ... P47811 32543856
    548486 6sov:A (1.31) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    548487 6sov:A (1.31) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    548488 6sov:A (1.31) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    548489 6sov:A (1.31) BS04 LOT 2.7.11.24 GO:0000077 ... P47811 32543856
    548490 6sov:A (1.31) BS05 LOW 2.7.11.24 GO:0000077 ... P47811 32543856
    548491 6sox:A (1.38) BS01 LQ2 2.7.11.11 GO:0000287 ... P25321 33021032
    548492 6soy:C (2.75) BS01 FE ? GO:0005515 ... P02787 31636418
    548493 6soz:C (3.42) BS01 FE ? GO:0005515 ... P02787 31636418
    548494 6sp0:A (1.77) BS01 COA 2.3.1.- N/A Q8CIB9 N/A
    548495 6sp0:A (1.77) BS02 ZN 2.3.1.- N/A Q8CIB9 N/A
    548496 6sp1:A (2.57) BS01 LQ8 ? N/A Q14145 32435379 BindingDB: IC50=183nM
    548497 6sp2:A (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    548498 6sp2:A (3.33) BS02 P5S ? GO:0016020 ... Q9U6P4 31907454
    548499 6sp2:A (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    548500 6sp2:A (3.33) BS04 LMN ? GO:0016020 ... Q9U6P4 31907454
    548501 6sp2:A (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    548502 6sp2:B (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    548503 6sp2:B (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    548504 6sp2:B (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    548505 6sp2:B (3.33) BS04 P5S ? GO:0016020 ... Q9U6P4 31907454
    548506 6sp2:B (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    548507 6sp2:C (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    548508 6sp2:C (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    548509 6sp2:C (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    548510 6sp2:C (3.33) BS04 P5S ? GO:0016020 ... Q9U6P4 31907454
    548511 6sp2:C (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    548512 6sp2:D (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    548513 6sp2:D (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    548514 6sp2:D (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    548515 6sp2:D (3.33) BS04 P5S ? GO:0016020 ... Q9U6P4 31907454
    548516 6sp2:D (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    548517 6sp2:E (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    548518 6sp2:E (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    548519 6sp2:E (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    548520 6sp2:E (3.33) BS04 P5S ? GO:0016020 ... Q9U6P4 31907454
    548521 6sp2:E (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    548522 6sp2:F (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    548523 6sp2:F (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    548524 6sp2:F (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    548525 6sp2:F (3.33) BS04 LMN ? GO:0016020 ... Q9U6P4 31907454
    548526 6sp2:F (3.33) BS05 P5S ? GO:0016020 ... Q9U6P4 31907454
    548527 6sp4:A (2.59) BS01 LQK ? N/A Q14145 32435379 BindingDB: IC50=2545nM
    548528 6sp4:B (2.59) BS01 LQK ? N/A Q14145 32435379 BindingDB: IC50=2545nM
    548529 6sp4:C (2.59) BS01 LQK ? N/A Q14145 32435379 BindingDB: IC50=2545nM
    548530 6sp4:D (2.59) BS01 LQK ? N/A Q14145 32435379 BindingDB: IC50=2545nM
    548531 6sp4:E (2.59) BS01 LQK ? N/A Q14145 32435379 BindingDB: IC50=2545nM
    548532 6sp4:F (2.59) BS01 LQK ? N/A Q14145 32435379 BindingDB: IC50=2545nM
    548533 6sp6:A (1.1) BS01 KJK 3.5.2.6 GO:0008800 ... A0A223A5J4 31765155
    548534 6sp7:A (1.8) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31765155
    548535 6sp7:A (1.8) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31765155
    548536 6sp7:A (1.8) BS03 K9B 3.5.2.6 GO:0016787 ... Q9K2N0 31765155 MOAD: ic50=0.026uM
    548537 6sp7:E (1.8) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31765155
    548538 6sp7:E (1.8) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31765155
    548539 6sp7:E (1.8) BS03 K9B 3.5.2.6 GO:0016787 ... Q9K2N0 31765155 MOAD: ic50=0.026uM
    548540 6sp9:A (1.22) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    548541 6sp9:A (1.22) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    548542 6sp9:A (1.22) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    548543 6sp9:A (1.22) BS04 LOT 2.7.11.24 GO:0000077 ... P47811 32543856
    548544 6sp9:A (1.22) BS05 LOT 2.7.11.24 GO:0000077 ... P47811 32543856
    548545 6spa:A (1.65) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32139772
    548546 6spa:C (1.65) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32139772
    548547 6spa:E (1.65) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32139772
    548548 6spa:G (1.65) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32139772
    548549 6spa:J (1.65) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32139772
    548550 6spa:L (1.65) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 32139772
    548551 6spb:1 (2.82) BS01 rna ? GO:0003735 ... A0A072ZJG4 31611393
    548552 6spb:1 (2.82) BS02 rna ? GO:0003735 ... A0A072ZJG4 31611393
    548553 6spb:2 (2.82) BS01 rna ? GO:0003735 ... A0A069QB25 31611393
    548554 6spb:3 (2.82) BS01 rna ? GO:0003735 ... A0A140SG33 31611393
    548555 6spb:4 (2.82) BS01 rna ? GO:0003735 ... A0A087L9L7 31611393
    548556 6spb:5 (2.82) BS01 rna ? GO:0003735 ... A0A069QC44 31611393
    548557 6spb:6 (2.82) BS01 rna ? GO:0003735 ... E2RXU2 31611393
    548558 6spb:C (2.82) BS01 rna ? GO:0002181 ... A0A241XHA2 31611393
    548559 6spb:D (2.82) BS01 rna ? GO:0003735 ... A0A072ZBZ2 31611393
    548560 6spb:E (2.82) BS01 rna ? GO:0003735 ... A0A241XH26 31611393
    548561 6spb:F (2.82) BS01 rna ? GO:0000049 ... A0A072ZMU2 31611393
    548562 6spb:F (2.82) BS02 rna ? GO:0000049 ... A0A072ZMU2 31611393
    548563 6spb:G (2.82) BS01 rna ? GO:0002181 ... A0A2V3F3S9 31611393
    548564 6spb:H (2.82) BS01 rna ? GO:0003735 ... A0A072ZKF0 31611393
    548565 6spb:I (2.82) BS01 rna ? GO:0003735 ... A0A2V3GYK0 31611393
    548566 6spb:J (2.82) BS01 rna ? GO:0003729 ... A0A071L356 31611393
    548567 6spb:K (2.82) BS01 rna ? GO:0003735 ... E2RXT6 31611393
    548568 6spb:L (2.82) BS01 rna ? GO:0003735 ... A0A2V3D5Z8 31611393
    548569 6spb:M (2.82) BS01 rna ? GO:0000049 ... A0A069QEB6 31611393
    548570 6spb:M (2.82) BS02 rna ? GO:0000049 ... A0A069QEB6 31611393
    548571 6spb:N (2.82) BS01 rna ? GO:0003735 ... A0A072ZCA1 31611393
    548572 6spb:O (2.82) BS01 rna ? GO:0003735 ... E2RXU0 31611393
    548573 6spb:O (2.82) BS02 rna ? GO:0003735 ... E2RXU0 31611393
    548574 6spb:P (2.82) BS01 rna ? GO:0003735 ... A0A263PZC6 31611393
    548575 6spb:Q (2.82) BS01 rna ? GO:0000027 ... A0A069QEE3 31611393
    548576 6spb:R (2.82) BS01 rna ? GO:0003723 ... A0A072ZDZ0 31611393
    548577 6spb:S (2.82) BS01 rna N/A GO:0003735 ... N/A 31611393
    548578 6spb:T (2.82) BS01 rna ? GO:0003735 ... E2RXT1 31611393
    548579 6spb:U (2.82) BS01 rna ? GO:0003723 ... E2RXT7 31611393
    548580 6spb:V (2.82) BS01 rna ? GO:0003723 ... A0A072ZBM5 31611393
    548581 6spb:V (2.82) BS02 rna ? GO:0003723 ... A0A072ZBM5 31611393
    548582 6spb:W (2.82) BS01 rna ? GO:0003735 ... A0A071LFT4 31611393
    548583 6spb:X (2.82) BS01 rna ? GO:0003735 ... A0A072ZIQ9 31611393
    548584 6spb:Y (2.82) BS01 rna ? GO:0003735 ... W6V2V8 31611393
    548585 6spb:Z (2.82) BS01 rna ? GO:0003735 ... E2RXU1 31611393
    548586 6spb:Z (2.82) BS02 rna ? GO:0003735 ... E2RXU1 31611393
    548587 6spc:b (2.95) BS01 rna ? GO:0003735 ... A0A072ZPV8 31611393
    548588 6spc:c (2.95) BS01 rna ? GO:0003676 ... A0A140S919 31611393
    548589 6spc:d (2.95) BS01 rna ? GO:0003723 ... A0A072ZDF7 31611393
    548590 6spc:e (2.95) BS01 rna ? GO:0003723 ... A0A241XG65 31611393
    548591 6spc:f (2.95) BS01 rna ? GO:0003735 ... A0A069Q263 31611393
    548592 6spc:g (2.95) BS01 rna ? GO:0000049 ... A0A2V3F2U6 31611393
    548593 6spc:h (2.95) BS01 rna ? GO:0003735 ... E2RXT9 31611393
    548594 6spc:i (2.95) BS01 rna ? GO:0003723 ... A0A069PXX1 31611393
    548595 6spc:j (2.95) BS01 rna ? GO:0000049 ... E2RXT0 31611393
    548596 6spc:k (2.95) BS01 rna ? GO:0003735 ... E2RXU4 31611393
    548597 6spc:l (2.95) BS01 rna ? GO:0000049 ... A0A071L394 31611393
    548598 6spc:m (2.95) BS01 rna ? GO:0000049 ... E2RXU3 31611393
    548599 6spc:n (2.95) BS01 rna ? GO:0003735 ... E2RXT8 31611393
    548600 6spc:o (2.95) BS01 rna ? GO:0003735 ... A0A071L3R7 31611393

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).