SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    549601 6sv4:YB (3.3) BS01 rna ? GO:0002181 ... P0CX49 32203490
    549602 6sv4:YC (3.3) BS01 rna ? GO:0002181 ... P0C2H8 32203490
    549603 6sv4:YD (3.3) BS01 rna ? GO:0000027 ... P41805 32203490
    549604 6sv4:YD (3.3) BS02 rna ? GO:0000027 ... P41805 32203490
    549605 6sv4:YE (3.3) BS01 rna ? GO:0002181 ... P10664 32203490
    549606 6sv4:YE (3.3) BS02 rna ? GO:0002181 ... P10664 32203490
    549607 6sv4:YF (3.3) BS01 rna ? GO:0002181 ... P0CX82 32203490
    549608 6sv4:YF (3.3) BS02 rna ? GO:0002181 ... P0CX82 32203490
    549609 6sv4:YG (3.3) BS01 rna ? GO:0002181 ... P38061 32203490
    549610 6sv4:YH (3.3) BS01 rna ? GO:0002181 ... P0CX23 32203490
    549611 6sv4:YH (3.3) BS02 rna ? GO:0002181 ... P0CX23 32203490
    549612 6sv4:YI (3.3) BS01 rna ? GO:0000027 ... P26321 32203490
    549613 6sv4:YI (3.3) BS02 rna ? GO:0000027 ... P26321 32203490
    549614 6sv4:YJ (3.3) BS01 rna ? GO:0002181 ... Q02753 32203490
    549615 6sv4:YJ (3.3) BS02 rna ? GO:0002181 ... Q02753 32203490
    549616 6sv4:YK (3.3) BS01 rna ? GO:0000027 ... P05744 32203490
    549617 6sv4:YL (3.3) BS01 rna ? GO:0002181 ... P05749 32203490
    549618 6sv4:YM (3.3) BS01 rna ? GO:0000027 ... Q02326 32203490
    549619 6sv4:YN (3.3) BS01 rna ? GO:0002181 ... P87262 32203490
    549620 6sv4:YO (3.3) BS01 rna ? GO:0000463 ... P05737 32203490
    549621 6sv4:YO (3.3) BS02 rna ? GO:0000463 ... P05737 32203490
    549622 6sv4:YP (3.3) BS01 rna ? GO:0000463 ... P0CX84 32203490
    549623 6sv4:YP (3.3) BS02 rna ? GO:0000463 ... P0CX84 32203490
    549624 6sv4:YU (3.3) BS01 rna ? GO:0000027 ... P05317 32203490
    549625 6sv4:Yb (3.3) BS01 rna ? GO:0000462 ... P05756 32203490
    549626 6sv4:Yb (3.3) BS02 rna ? GO:0000462 ... P05756 32203490
    549627 6sv4:Yc (3.3) BS01 rna ? GO:0000462 ... P05756 32203490
    549628 6sv4:Z (3.3) BS01 rna ? GO:0000028 ... P06367 32203490
    549629 6sv4:ZA (3.3) BS01 rna ? GO:0000027 ... P14126 32203490
    549630 6sv4:ZB (3.3) BS01 rna ? GO:0002181 ... P0CX49 32203490
    549631 6sv4:ZC (3.3) BS01 rna ? GO:0002181 ... P0C2H8 32203490
    549632 6sv4:ZD (3.3) BS01 rna ? GO:0000027 ... P41805 32203490
    549633 6sv4:ZD (3.3) BS02 rna ? GO:0000027 ... P41805 32203490
    549634 6sv4:ZE (3.3) BS01 rna ? GO:0002181 ... P10664 32203490
    549635 6sv4:ZE (3.3) BS02 rna ? GO:0002181 ... P10664 32203490
    549636 6sv4:ZF (3.3) BS01 rna ? GO:0002181 ... P0CX82 32203490
    549637 6sv4:ZF (3.3) BS02 rna ? GO:0002181 ... P0CX82 32203490
    549638 6sv4:ZG (3.3) BS01 rna ? GO:0002181 ... P38061 32203490
    549639 6sv4:ZH (3.3) BS01 rna ? GO:0002181 ... P0CX23 32203490
    549640 6sv4:ZH (3.3) BS02 rna ? GO:0002181 ... P0CX23 32203490
    549641 6sv4:ZI (3.3) BS01 rna ? GO:0000027 ... P26321 32203490
    549642 6sv4:ZI (3.3) BS02 rna ? GO:0000027 ... P26321 32203490
    549643 6sv4:ZJ (3.3) BS01 rna ? GO:0002181 ... Q02753 32203490
    549644 6sv4:ZJ (3.3) BS02 rna ? GO:0002181 ... Q02753 32203490
    549645 6sv4:ZK (3.3) BS01 rna ? GO:0000027 ... P05744 32203490
    549646 6sv4:ZL (3.3) BS01 rna ? GO:0002181 ... P05749 32203490
    549647 6sv4:ZM (3.3) BS01 rna ? GO:0000027 ... Q02326 32203490
    549648 6sv4:ZN (3.3) BS01 rna ? GO:0002181 ... P87262 32203490
    549649 6sv4:ZO (3.3) BS01 rna ? GO:0000463 ... P05737 32203490
    549650 6sv4:ZO (3.3) BS02 rna ? GO:0000463 ... P05737 32203490
    549651 6sv4:ZP (3.3) BS01 rna ? GO:0000463 ... P0CX84 32203490
    549652 6sv4:ZP (3.3) BS02 rna ? GO:0000463 ... P0CX84 32203490
    549653 6sv4:ZU (3.3) BS01 rna ? GO:0000027 ... P05317 32203490
    549654 6sv4:Zb (3.3) BS01 rna ? GO:0000028 ... P06367 32203490
    549655 6sv4:Zc (3.3) BS01 rna ? GO:0000028 ... P06367 32203490
    549656 6sv4:a (3.3) BS01 rna ? GO:0000447 ... P0C0V8 32203490
    549657 6sv4:b (3.3) BS01 rna ? GO:0002181 ... P0C0W1 32203490
    549658 6sv4:bb (3.3) BS01 rna ? GO:0002181 ... P0C0W1 32203490
    549659 6sv4:bc (3.3) BS01 rna ? GO:0002181 ... P0C0W1 32203490
    549660 6sv4:c (3.3) BS01 rna ? GO:0000462 ... P0CX29 32203490
    549661 6sv4:cb (3.3) BS01 rna ? GO:0000462 ... P0CX29 32203490
    549662 6sv4:cc (3.3) BS01 rna ? GO:0000462 ... P0CX29 32203490
    549663 6sv4:d (3.3) BS01 rna ? GO:0000462 ... P0CX31 32203490
    549664 6sv4:db (3.3) BS01 rna ? GO:0000462 ... P0CX31 32203490
    549665 6sv4:dc (3.3) BS01 rna ? GO:0000462 ... P0CX31 32203490
    549666 6sv4:e (3.3) BS01 rna ? GO:0000054 ... P39938 32203490
    549667 6sv4:eb (3.3) BS01 rna ? GO:0000054 ... P39938 32203490
    549668 6sv4:ec (3.3) BS01 rna ? GO:0000054 ... P39938 32203490
    549669 6sv4:f (3.3) BS01 rna ? GO:0000028 ... P35997 32203490
    549670 6sv4:fb (3.3) BS01 rna ? GO:0000028 ... P35997 32203490
    549671 6sv4:fc (3.3) BS01 rna ? GO:0000028 ... P35997 32203490
    549672 6sv4:g (3.3) BS01 rna ? GO:0002181 ... P0CX33 32203490
    549673 6sv4:gb (3.3) BS01 rna ? GO:0002181 ... P0CX33 32203490
    549674 6sv4:gc (3.3) BS01 rna ? GO:0002181 ... P0CX33 32203490
    549675 6sv4:zA (3.3) BS01 rna ? GO:0000470 ... P17076 32203490
    549676 6sv4:zA (3.3) BS02 rna ? GO:0000470 ... P17076 32203490
    549677 6sv4:zB (3.3) BS01 rna ? GO:0002181 ... P0CX41 32203490
    549678 6sv4:zB (3.3) BS02 rna ? GO:0002181 ... P0CX41 32203490
    549679 6sv4:zC (3.3) BS01 rna ? GO:0002181 ... P05745 32203490
    549680 6sv4:zD (3.3) BS01 rna ? GO:0002181 ... P05738 32203490
    549681 6sv4:zE (3.3) BS01 rna ? GO:0003735 ... P04449 32203490
    549682 6sv4:zE (3.3) BS02 rna ? GO:0003735 ... P04449 32203490
    549683 6sv4:zF (3.3) BS01 rna ? GO:0000448 ... P49166 32203490
    549684 6sv4:zF (3.3) BS02 rna ? GO:0000448 ... P49166 32203490
    549685 6sv4:zG (3.3) BS01 rna ? GO:0000027 ... P0C0W9 32203490
    549686 6sv4:zG (3.3) BS02 rna ? GO:0000027 ... P0C0W9 32203490
    549687 6sv4:zH (3.3) BS01 rna ? GO:0000027 ... P04456 32203490
    549688 6sv4:zH (3.3) BS02 rna ? GO:0000027 ... P04456 32203490
    549689 6sv4:zI (3.3) BS01 rna ? GO:0002181 ... P49167 32203490
    549690 6sv4:zJ (3.3) BS01 rna ? GO:0002181 ... Q12690 32203490
    549691 6sv4:zJ (3.3) BS02 rna ? GO:0002181 ... Q12690 32203490
    549692 6sv4:zK (3.3) BS01 rna ? GO:0002181 ... P05743 32203490
    549693 6sv4:zK (3.3) BS02 rna ? GO:0002181 ... P05743 32203490
    549694 6sv4:zL (3.3) BS01 rna ? GO:0002181 ... P04650 32203490
    549695 6sv4:zL (3.3) BS02 rna ? GO:0002181 ... P04650 32203490
    549696 6sv4:zM (3.3) BS01 rna ? GO:0000027 ... P36105 32203490
    549697 6sv4:zN (3.3) BS01 rna ? GO:0002181 ... P0C2H6 32203490
    549698 6sv4:zO (3.3) BS01 rna ? GO:0000027 ... P0CH08 32203490
    549699 6sv4:zP (3.3) BS01 rna ? GO:0002181 ... P0CX27 32203490
    549700 6sv4:zP (3.3) BS02 rna ? GO:0002181 ... P0CX27 32203490
    549701 6sv4:zQ (3.3) BS01 rna ? GO:0002181 ... P05748 32203490
    549702 6sv4:zQ (3.3) BS02 rna ? GO:0002181 ... P05748 32203490
    549703 6sv4:zR (3.3) BS01 rna ? GO:0002181 ... P02406 32203490
    549704 6sv4:zT (3.3) BS01 rna ? GO:0002181 ... P0CX25 32203490
    549705 6sv4:zU (3.3) BS01 rna ? GO:0000470 ... P26784 32203490
    549706 6sv4:zV (3.3) BS01 rna ? GO:0002181 ... P05747 32203490
    549707 6sv4:zW (3.3) BS01 rna ? GO:0002181 ... P0CX45 32203490
    549708 6sv4:zW (3.3) BS02 rna ? GO:0002181 ... P0CX45 32203490
    549709 6sv4:zX (3.3) BS01 rna ? GO:0000448 ... P05740 32203490
    549710 6sv4:zX (3.3) BS02 rna ? GO:0000448 ... P05740 32203490
    549711 6sv4:zY (3.3) BS01 rna ? GO:0002181 ... P14120 32203490
    549712 6sv5:A (2.0) BS01 ATP 2.7.1.230 GO:0004413 ... A8FAR5 32637600 MOAD: Kd=50nM
    549713 6sv6:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549714 6sv8:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549715 6sv9:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549716 6sva:A (1.92) BS01 HEM ? GO:0004601 ... P01958 N/A
    549717 6sva:B (1.92) BS01 HEM ? GO:0004601 ... P02062 N/A
    549718 6svb:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549719 6svd:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549720 6svf:A (1.6) BS01 ARG ? GO:0015276 ... Q9WZ62 31702584
    549721 6svg:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549722 6svi:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549723 6svj:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549724 6svm:A (2.481) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    549725 6svm:A (2.481) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    549726 6svm:A (2.481) BS03 UD2 2.6.1.16 GO:0004360 ... Q06210 32019926
    549727 6svm:A (2.481) BS04 MG 2.6.1.16 GO:0004360 ... Q06210 32019926
    549728 6svm:B (2.481) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    549729 6svm:B (2.481) BS02 UD2 2.6.1.16 GO:0004360 ... Q06210 32019926
    549730 6svm:B (2.481) BS03 MG 2.6.1.16 GO:0004360 ... Q06210 32019926
    549731 6svn:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549732 6svo:A (2.328) BS01 AGP 2.6.1.16 GO:0004360 ... Q06210 32019926
    549733 6svo:A (2.328) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    549734 6svo:B (2.328) BS01 AGP 2.6.1.16 GO:0004360 ... Q06210 32019926
    549735 6svp:A (2.531) BS01 UD1 2.6.1.16 GO:0004360 ... Q06210 32019926
    549736 6svp:A (2.531) BS02 MG 2.6.1.16 GO:0004360 ... Q06210 32019926
    549737 6svp:A (2.531) BS03 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    549738 6svp:A (2.531) BS04 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    549739 6svp:B (2.531) BS01 UD1 2.6.1.16 GO:0004360 ... Q06210 32019926
    549740 6svp:B (2.531) BS02 MG 2.6.1.16 GO:0004360 ... Q06210 32019926
    549741 6svp:B (2.531) BS03 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    549742 6svq:A (2.717) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    549743 6svq:A (2.717) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    549744 6svq:B (2.717) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    549745 6svr:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549746 6svu:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549747 6svv:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549748 6svw:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549749 6svx:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549750 6svy:A (2.6) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 32337993
    549751 6svy:A (2.6) BS02 D0W 3.4.24.11 GO:0001786 ... P08473 32337993
    549752 6svz:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549753 6sw0:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    549754 6sw1:A (1.8) BS01 FAD ? GO:0000166 ... Q9HWJ1 32451409 MOAD: Kd=37.5nM
    549755 6sw2:A (1.7) BS01 FAD ? GO:0000166 ... Q9HWJ1 32451409 MOAD: Kd=259.8nM
    549756 6sw2:A (1.7) BS02 61M ? GO:0000166 ... Q9HWJ1 32451409 MOAD: Kd=38.44uM
    549757 6sw9:0 (4.2) BS01 rna ? GO:0005840 ... Q8U232 32029867
    549758 6sw9:3 (4.2) BS01 rna ? GO:0001682 ... P62008 32029867
    549759 6sw9:6 (4.2) BS01 rna ? GO:0003723 ... Q9V138 32029867
    549760 6sw9:6 (4.2) BS02 rna ? GO:0003723 ... Q9V138 32029867
    549761 6sw9:7 (4.2) BS01 rna 3.6.5.3 GO:0000049 ... Q980A5 32029867
    549762 6sw9:7 (4.2) BS02 rna 3.6.5.3 GO:0000049 ... Q980A5 32029867
    549763 6sw9:7 (4.2) BS03 MET 3.6.5.3 GO:0000049 ... Q980A5 32029867
    549764 6sw9:7 (4.2) BS04 GNP 3.6.5.3 GO:0000049 ... Q980A5 32029867
    549765 6sw9:7 (4.2) BS05 MG 3.6.5.3 GO:0000049 ... Q980A5 32029867
    549766 6sw9:A (4.2) BS01 rna ? GO:0003735 ... Q9V2K7 32029867
    549767 6sw9:B (4.2) BS01 rna ? GO:0003735 ... Q9V191 32029867
    549768 6sw9:C (4.2) BS01 ZN ? N/A G8ZFK7 32029867
    549769 6sw9:C (4.2) BS02 ZN ? N/A G8ZFK7 32029867
    549770 6sw9:D (4.2) BS01 rna ? GO:0003723 ... P61992 32029867
    549771 6sw9:E (4.2) BS01 rna ? GO:0003723 ... Q9V1U8 32029867
    549772 6sw9:F (4.2) BS01 rna ? GO:0003723 ... Q9V1V5 32029867
    549773 6sw9:F (4.2) BS02 ZN ? GO:0003723 ... Q9V1V5 32029867
    549774 6sw9:G (4.2) BS01 rna ? GO:0003735 ... Q9UYS3 32029867
    549775 6sw9:H (4.2) BS01 rna ? GO:0003735 ... Q9V109 32029867
    549776 6sw9:I (4.2) BS01 rna ? GO:0003735 ... Q9V1V0 32029867
    549777 6sw9:J (4.2) BS01 rna ? GO:0003735 ... Q9UZL4 32029867
    549778 6sw9:K (4.2) BS01 rna ? GO:0000462 ... Q9V195 32029867
    549779 6sw9:L (4.2) BS01 rna ? GO:0000049 ... Q9V0V6 32029867
    549780 6sw9:M (4.2) BS01 rna ? GO:0003735 ... P62010 32029867
    549781 6sw9:N (4.2) BS01 rna ? GO:0003735 ... P61994 32029867
    549782 6sw9:O (4.2) BS01 rna ? GO:0003676 ... Q9V1A0 32029867
    549783 6sw9:P (4.2) BS01 rna ? GO:0002181 ... P62012 32029867
    549784 6sw9:P (4.2) BS02 ZN ? GO:0002181 ... P62012 32029867
    549785 6sw9:Q (4.2) BS01 rna ? GO:0003735 ... Q9V2K9 32029867
    549786 6sw9:R (4.2) BS01 rna ? GO:0003735 ... Q9V1U5 32029867
    549787 6sw9:R (4.2) BS02 ZN ? GO:0003735 ... Q9V1U5 32029867
    549788 6sw9:S (4.2) BS01 rna ? GO:0003735 ... Q9V0G0 32029867
    549789 6sw9:T (4.2) BS01 rna ? GO:0000028 ... Q9V1T9 32029867
    549790 6sw9:U (4.2) BS01 rna ? GO:0000028 ... Q9V0G8 32029867
    549791 6sw9:V (4.2) BS01 rna ? GO:0003735 ... Q9UY20 32029867
    549792 6sw9:W (4.2) BS01 rna ? GO:0003735 ... Q9UXZ3 32029867
    549793 6sw9:W (4.2) BS02 ZN ? GO:0003735 ... Q9UXZ3 32029867
    549794 6sw9:X (4.2) BS01 rna ? GO:0000028 ... P61029 32029867
    549795 6sw9:Y (4.2) BS01 rna ? GO:0003735 ... P61238 32029867
    549796 6sw9:Z (4.2) BS01 rna ? GO:0003676 ... Q9V1U1 32029867
    549797 6swa:A (3.1) BS01 rna ? GO:0002181 ... P62918 33357414
    549798 6swa:B (3.1) BS01 rna ? GO:0002181 ... P27659 33357414
    549799 6swa:C (3.1) BS01 rna ? GO:0003735 ... Q9D8E6 33357414
    549800 6swa:C (3.1) BS02 rna ? GO:0003735 ... Q9D8E6 33357414

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).