SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    549801 6swa:D (3.1) BS01 rna ? GO:0002181 ... P47962 33357414
    549802 6swa:D (3.1) BS02 rna ? GO:0002181 ... P47962 33357414
    549803 6swa:E (3.1) BS01 rna ? GO:0003735 ... P47911 33357414
    549804 6swa:F (3.1) BS01 rna ? GO:0000463 ... P14148 33357414
    549805 6swa:F (3.1) BS02 rna ? GO:0000463 ... P14148 33357414
    549806 6swa:G (3.1) BS01 rna ? GO:0003723 ... P12970 33357414
    549807 6swa:G (3.1) BS02 rna ? GO:0003723 ... P12970 33357414
    549808 6swa:H (3.1) BS01 rna ? GO:0002181 ... P51410 33357414
    549809 6swa:I (3.1) BS01 rna ? GO:0003735 ... Q6ZWV3 33357414
    549810 6swa:I (3.1) BS02 rna ? GO:0003735 ... Q6ZWV3 33357414
    549811 6swa:J (3.1) BS01 rna ? GO:0000027 ... Q9CXW4 33357414
    549812 6swa:J (3.1) BS02 rna ? GO:0000027 ... Q9CXW4 33357414
    549813 6swa:K (3.1) BS01 rna ? GO:0001824 ... P47963 33357414
    549814 6swa:K (3.1) BS02 rna ? GO:0001824 ... P47963 33357414
    549815 6swa:L (3.1) BS01 rna ? GO:0003723 ... Q9CR57 33357414
    549816 6swa:M (3.1) BS01 rna ? GO:0002181 ... Q9CZM2 33357414
    549817 6swa:M (3.1) BS02 rna ? GO:0002181 ... Q9CZM2 33357414
    549818 6swa:N (3.1) BS01 rna ? GO:0002181 ... P19253 33357414
    549819 6swa:O (3.1) BS01 rna ? GO:0003735 ... Q9CPR4 33357414
    549820 6swa:O (3.1) BS02 rna ? GO:0003735 ... Q9CPR4 33357414
    549821 6swa:P (3.1) BS01 rna ? GO:0002181 ... P35980 33357414
    549822 6swa:Q (3.1) BS01 rna ? GO:0002181 ... P62717 33357414
    549823 6swa:Q (3.1) BS02 rna ? GO:0002181 ... P62717 33357414
    549824 6swa:R (3.1) BS01 rna ? GO:0002181 ... O09167 33357414
    549825 6swa:R (3.1) BS02 rna ? GO:0002181 ... O09167 33357414
    549826 6swa:S (3.1) BS01 rna ? GO:0003735 ... P67984 33357414
    549827 6swa:T (3.1) BS01 rna ? GO:0000122 ... P62830 33357414
    549828 6swa:U (3.1) BS01 rna ? GO:0003735 ... Q8BP67 33357414
    549829 6swa:V (3.1) BS01 rna ? GO:0003735 ... P62751 33357414
    549830 6swa:V (3.1) BS02 rna ? GO:0003735 ... P62751 33357414
    549831 6swa:W (3.1) BS01 rna ? GO:0003723 ... Q4FZH2 33357414
    549832 6swa:W (3.1) BS02 rna ? GO:0003723 ... Q4FZH2 33357414
    549833 6swa:X (3.1) BS01 rna ? GO:0003735 ... Q5BLJ9 33357414
    549834 6swa:Y (3.1) BS01 rna ? GO:0002181 ... P14115 33357414
    549835 6swa:Z (3.1) BS01 rna ? GO:0003735 ... P47915 33357414
    549836 6swa:a (3.1) BS01 rna ? GO:0003723 ... P62889 33357414
    549837 6swa:b (3.1) BS01 rna ? GO:0003735 ... P62900 33357414
    549838 6swa:c (3.1) BS01 rna ? GO:0002181 ... P62911 33357414
    549839 6swa:d (3.1) BS01 rna ? GO:0002181 ... O55142 33357414
    549840 6swa:e (3.1) BS01 rna ? GO:0002181 ... Q9D1R9 33357414
    549841 6swa:f (3.1) BS01 rna ? GO:0000463 ... Q6ZWV7 33357414
    549842 6swa:f (3.1) BS02 rna ? GO:0000463 ... Q6ZWV7 33357414
    549843 6swa:g (3.1) BS01 rna ? GO:0002181 ... P47964 33357414
    549844 6swa:h (3.1) BS01 rna ? GO:0003735 ... Q9D823 33357414
    549845 6swa:h (3.1) BS02 rna ? GO:0003735 ... Q9D823 33357414
    549846 6swa:h (3.1) BS03 ZN ? GO:0003735 ... Q9D823 33357414
    549847 6swa:i (3.1) BS01 rna ? GO:0001501 ... Q9JJI8 33357414
    549848 6swa:j (3.1) BS01 rna ? GO:0003735 ... Q505A8 33357414
    549849 6swa:j (3.1) BS02 rna ? GO:0003735 ... Q505A8 33357414
    549850 6swa:k (3.1) BS01 rna ? GO:0003735 ... Q5M9K3 33357414
    549851 6swa:m (3.1) BS01 rna ? GO:0003735 ... Q5M9P1 33357414
    549852 6swa:m (3.1) BS02 ZN ? GO:0003735 ... Q5M9P1 33357414
    549853 6swa:n (3.1) BS01 rna ? GO:0003735 ... Q4VAF2 33357414
    549854 6swa:o (3.1) BS01 rna ? GO:0002181 ... P84099 33357414
    549855 6swa:p (3.1) BS01 rna ? GO:0003735 ... P41105 33357414
    549856 6swa:t (3.1) BS01 rna ? GO:0003676 ... P50580 33357414
    549857 6swc:0 (3.3) BS01 rna ? GO:0005840 ... Q8U232 32029867
    549858 6swc:3 (3.3) BS01 rna ? GO:0001682 ... P62008 32029867
    549859 6swc:6 (3.3) BS01 rna ? GO:0003723 ... Q9V138 32029867
    549860 6swc:6 (3.3) BS02 rna ? GO:0003723 ... Q9V138 32029867
    549861 6swc:7 (3.3) BS01 rna 3.6.5.3 GO:0000049 ... Q980A5 32029867
    549862 6swc:7 (3.3) BS02 MET 3.6.5.3 GO:0000049 ... Q980A5 32029867
    549863 6swc:7 (3.3) BS03 GNP 3.6.5.3 GO:0000049 ... Q980A5 32029867
    549864 6swc:A (3.3) BS01 rna ? GO:0003735 ... Q9V2K7 32029867
    549865 6swc:B (3.3) BS01 rna ? GO:0003735 ... Q9V191 32029867
    549866 6swc:C (3.3) BS01 ZN ? N/A G8ZFK7 32029867
    549867 6swc:C (3.3) BS02 ZN ? N/A G8ZFK7 32029867
    549868 6swc:D (3.3) BS01 rna ? GO:0003723 ... P61992 32029867
    549869 6swc:E (3.3) BS01 rna ? GO:0003723 ... Q9V1U8 32029867
    549870 6swc:F (3.3) BS01 rna ? GO:0003723 ... Q9V1V5 32029867
    549871 6swc:F (3.3) BS02 ZN ? GO:0003723 ... Q9V1V5 32029867
    549872 6swc:G (3.3) BS01 rna ? GO:0003735 ... Q9UYS3 32029867
    549873 6swc:H (3.3) BS01 rna ? GO:0003735 ... Q9V109 32029867
    549874 6swc:I (3.3) BS01 rna ? GO:0003735 ... Q9V1V0 32029867
    549875 6swc:J (3.3) BS01 rna ? GO:0003735 ... Q9UZL4 32029867
    549876 6swc:K (3.3) BS01 rna ? GO:0000462 ... Q9V195 32029867
    549877 6swc:L (3.3) BS01 rna ? GO:0000049 ... Q9V0V6 32029867
    549878 6swc:M (3.3) BS01 rna ? GO:0003735 ... P62010 32029867
    549879 6swc:N (3.3) BS01 rna ? GO:0003735 ... P61994 32029867
    549880 6swc:O (3.3) BS01 rna ? GO:0003676 ... Q9V1A0 32029867
    549881 6swc:O (3.3) BS02 rna ? GO:0003676 ... Q9V1A0 32029867
    549882 6swc:P (3.3) BS01 rna ? GO:0002181 ... P62012 32029867
    549883 6swc:P (3.3) BS02 ZN ? GO:0002181 ... P62012 32029867
    549884 6swc:Q (3.3) BS01 rna ? GO:0003735 ... Q9V2K9 32029867
    549885 6swc:R (3.3) BS01 rna ? GO:0003735 ... Q9V1U5 32029867
    549886 6swc:R (3.3) BS02 ZN ? GO:0003735 ... Q9V1U5 32029867
    549887 6swc:S (3.3) BS01 rna ? GO:0003735 ... Q9V0G0 32029867
    549888 6swc:T (3.3) BS01 rna ? GO:0000028 ... Q9V1T9 32029867
    549889 6swc:T (3.3) BS02 rna ? GO:0000028 ... Q9V1T9 32029867
    549890 6swc:U (3.3) BS01 rna ? GO:0000028 ... Q9V0G8 32029867
    549891 6swc:V (3.3) BS01 rna ? GO:0003735 ... Q9UY20 32029867
    549892 6swc:W (3.3) BS01 rna ? GO:0003735 ... Q9UXZ3 32029867
    549893 6swc:W (3.3) BS02 ZN ? GO:0003735 ... Q9UXZ3 32029867
    549894 6swc:X (3.3) BS01 rna ? GO:0000028 ... P61029 32029867
    549895 6swc:Y (3.3) BS01 rna ? GO:0003735 ... P61238 32029867
    549896 6swc:Z (3.3) BS01 rna ? GO:0003676 ... Q9V1U1 32029867
    549897 6swd:0 (3.2) BS01 rna ? GO:0005840 ... Q8U232 32029867
    549898 6swd:6 (3.2) BS01 rna ? GO:0003723 ... Q9V138 32029867
    549899 6swd:6 (3.2) BS02 rna ? GO:0003723 ... Q9V138 32029867
    549900 6swd:A (3.2) BS01 rna ? GO:0003735 ... Q9V2K7 32029867
    549901 6swd:B (3.2) BS01 rna ? GO:0003735 ... Q9V191 32029867
    549902 6swd:C (3.2) BS01 ZN ? N/A G8ZFK7 32029867
    549903 6swd:C (3.2) BS02 ZN ? N/A G8ZFK7 32029867
    549904 6swd:D (3.2) BS01 rna ? GO:0003723 ... P61992 32029867
    549905 6swd:E (3.2) BS01 rna ? GO:0003723 ... Q9V1U8 32029867
    549906 6swd:F (3.2) BS01 rna ? GO:0003723 ... Q9V1V5 32029867
    549907 6swd:F (3.2) BS02 ZN ? GO:0003723 ... Q9V1V5 32029867
    549908 6swd:G (3.2) BS01 rna ? GO:0003735 ... Q9UYS3 32029867
    549909 6swd:I (3.2) BS01 rna ? GO:0003735 ... Q9V1V0 32029867
    549910 6swd:J (3.2) BS01 rna ? GO:0003735 ... Q9UZL4 32029867
    549911 6swd:M (3.2) BS01 rna ? GO:0003735 ... P62010 32029867
    549912 6swd:N (3.2) BS01 rna ? GO:0003735 ... P61994 32029867
    549913 6swd:Q (3.2) BS01 rna ? GO:0003735 ... Q9V2K9 32029867
    549914 6swd:R (3.2) BS01 rna ? GO:0003735 ... Q9V1U5 32029867
    549915 6swd:R (3.2) BS02 ZN ? GO:0003735 ... Q9V1U5 32029867
    549916 6swd:V (3.2) BS01 rna ? GO:0003735 ... Q9UY20 32029867
    549917 6swd:W (3.2) BS01 rna ? GO:0003735 ... Q9UXZ3 32029867
    549918 6swd:W (3.2) BS02 ZN ? GO:0003735 ... Q9UXZ3 32029867
    549919 6swe:3 (3.1) BS01 rna ? GO:0001682 ... P62008 32029867
    549920 6swe:H (3.1) BS01 rna ? GO:0003735 ... Q9V109 32029867
    549921 6swe:K (3.1) BS01 rna ? GO:0000462 ... Q9V195 32029867
    549922 6swe:L (3.1) BS01 rna ? GO:0000049 ... Q9V0V6 32029867
    549923 6swe:O (3.1) BS01 rna ? GO:0003676 ... Q9V1A0 32029867
    549924 6swe:O (3.1) BS02 rna ? GO:0003676 ... Q9V1A0 32029867
    549925 6swe:P (3.1) BS01 rna ? GO:0002181 ... P62012 32029867
    549926 6swe:P (3.1) BS02 ZN ? GO:0002181 ... P62012 32029867
    549927 6swe:S (3.1) BS01 rna ? GO:0003735 ... Q9V0G0 32029867
    549928 6swe:T (3.1) BS01 rna ? GO:0000028 ... Q9V1T9 32029867
    549929 6swe:T (3.1) BS02 rna ? GO:0000028 ... Q9V1T9 32029867
    549930 6swe:U (3.1) BS01 rna ? GO:0000028 ... Q9V0G8 32029867
    549931 6swe:X (3.1) BS01 rna ? GO:0000028 ... P61029 32029867
    549932 6swe:Y (3.1) BS01 rna ? GO:0003735 ... P61238 32029867
    549933 6swe:Z (3.1) BS01 rna ? GO:0003676 ... Q9V1U1 32029867
    549934 6swl:A (2.17) BS01 MG ? GO:0000160 ... Q09LZ6 N/A
    549935 6swl:B (2.17) BS01 MG ? GO:0000160 ... Q09LZ6 N/A
    549936 6swm:A (2.77) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 30560259
    549937 6swm:A (2.77) BS02 LVW 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 30560259 BindingDB: Ki=530nM
    549938 6swm:B (2.77) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 30560259
    549939 6swm:B (2.77) BS02 LVW 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 30560259 BindingDB: Ki=530nM
    549940 6swn:AAA (1.28) BS01 LWB ? N/A O60885 32193360 BindingDB: Kd=1259nM, IC50=50nM
    549941 6swo:AAA (1.601) BS01 LWB ? N/A P25440 32193360 BindingDB: IC50=79nM
    549942 6swp:AAA (1.604) BS01 LW5 ? N/A P25440 32193360
    549943 6swq:AAA (1.601) BS01 LW5 ? N/A O60885 32193360 BindingDB: IC50=50nM
    549944 6swr:A (3.2) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    549945 6swr:A (3.2) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    549946 6swr:D (3.2) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    549947 6swr:D (3.2) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    549948 6swv:AAA (1.432) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32381789
    549949 6swx:A (1.95) BS01 LWN 6.1.1.10 GO:0000166 ... Q4QCD2 32275825 MOAD: ic50=2.06uM
    549950 6swx:A (1.95) BS02 MET 6.1.1.10 GO:0000166 ... Q4QCD2 32275825
    549951 6sx0:A (1.75) BS01 rna ? GO:0003723 ... Q1PST0 32867106
    549952 6sx0:A (1.75) BS02 rna ? GO:0003723 ... Q1PST0 32867106
    549953 6sx0:B (1.75) BS01 rna ? GO:0003723 ... Q1PST0 32867106
    549954 6sx0:B (1.75) BS02 rna ? GO:0003723 ... Q1PST0 32867106
    549955 6sx2:A (1.9) BS01 rna ? GO:0003723 ... Q1PST0 32867106
    549956 6sx2:A (1.9) BS02 rna ? GO:0003723 ... Q1PST0 32867106
    549957 6sx2:B (1.9) BS01 rna ? GO:0003723 ... Q1PST0 32867106
    549958 6sx2:B (1.9) BS02 rna ? GO:0003723 ... Q1PST0 32867106
    549959 6sx5:A (2.2) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    549960 6sx7:A (2.5) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    549961 6sx8:A (1.8) BS01 ZN 3.1.13.- N/A Q5S581 N/A
    549962 6sx8:A (1.8) BS02 MN 3.1.13.- N/A Q5S581 N/A
    549963 6sx8:B (1.8) BS01 ZN 3.1.13.- N/A Q5S581 N/A
    549964 6sx8:B (1.8) BS02 MN 3.1.13.- N/A Q5S581 N/A
    549965 6sx9:A (1.43) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    549966 6sx9:A (1.43) BS02 LWT 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    549967 6sxb:G (7.9) BS01 dna ? GO:0000014 ... P07992 32111838
    549968 6sxc:A (2.5) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    549969 6sxc:A (2.5) BS02 OHT ? GO:0001518 ... A0L5S6 33503406
    549970 6sxc:A (2.5) BS03 2CV ? GO:0001518 ... A0L5S6 33503406
    549971 6sxe:A (2.6) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    549972 6sxe:A (2.6) BS02 9XY ? GO:0001518 ... A0L5S6 33503406
    549973 6sxe:A (2.6) BS03 9XY ? GO:0001518 ... A0L5S6 33503406
    549974 6sxf:A (2.839) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    549975 6sxf:A (2.839) BS02 CTX ? GO:0001518 ... A0L5S6 33503406
    549976 6sxf:B (2.839) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    549977 6sxf:B (2.839) BS02 CTX ? GO:0001518 ... A0L5S6 33503406
    549978 6sxg:A (2.4) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    549979 6sxg:A (2.4) BS02 OHT ? GO:0001518 ... A0L5S6 33503406
    549980 6sxo:A (3.3) BS01 rna ? GO:0003676 ... Q9UQ80 32034140
    549981 6sxo:LR (3.3) BS01 rna ? GO:0002181 ... P84098 32034140
    549982 6sxo:LX (3.3) BS01 rna ? GO:0002181 ... P62750 32034140
    549983 6sxo:LY (3.3) BS01 rna ? GO:0002181 ... P61254 32034140
    549984 6sxo:LY (3.3) BS02 rna ? GO:0002181 ... P61254 32034140
    549985 6sxo:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 32034140
    549986 6sxo:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 32034140
    549987 6sxr:A (1.64) BS01 KHP 3.2.1.55 GO:0005576 ... Q8NK89 32053363
    549988 6sxr:A (1.64) BS02 KHP 3.2.1.55 GO:0005576 ... Q8NK89 32053363
    549989 6sxr:A (1.64) BS03 KHP 3.2.1.55 GO:0005576 ... Q8NK89 32053363
    549990 6sxs:AAA (1.859) BS01 LX5 3.2.1.55 GO:0005576 ... Q8NK89 32053363
    549991 6sxt:A (1.466) BS01 LXE 3.2.1.55 GO:0005576 ... Q8NK89 32053363
    549992 6sxu:AAA (1.398) BS01 LX5 3.2.1.55 GO:0000272 ... Q9XBQ3 32053363
    549993 6sxu:BBB (1.398) BS01 LX5 3.2.1.55 GO:0000272 ... Q9XBQ3 32053363
    549994 6sxv:A (1.402) BS01 LXE 3.2.1.55 GO:0000272 ... Q9XBQ3 32053363
    549995 6sxv:B (1.402) BS01 LXE 3.2.1.55 GO:0000272 ... Q9XBQ3 32053363
    549996 6sxx:A (2.01) BS01 LXQ 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    549997 6sxx:B (2.01) BS01 LXQ 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    549998 6sxy:A (2.06) BS01 LXH ? GO:0016787 ... A0A2K8JN75 33995922
    549999 6sxy:B (2.06) BS01 LXH ? GO:0016787 ... A0A2K8JN75 33995922
    550000 6sy0:A (3.102) BS01 dna ? N/A C6KSN9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).