SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    550401 6t0q:A (2.05) BS02 CA ? GO:0046872 ... E7E2M2 31985778
    550402 6t0r:A (2.82) BS01 rna ? GO:0003723 ... H6QM92 32304664
    550403 6t0r:B (2.82) BS01 rna 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550404 6t0r:C (2.82) BS01 rna ? GO:0003723 ... H6QM90 32304664
    550405 6t0s:A (3.04) BS01 rna ? GO:0003723 ... H6QM92 32304664
    550406 6t0s:B (3.04) BS01 rna 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550407 6t0s:B (3.04) BS02 rna 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550408 6t0s:C (3.04) BS01 rna ? GO:0003723 ... H6QM90 32304664
    550409 6t0s:C (3.04) BS02 rna ? GO:0003723 ... H6QM90 32304664
    550410 6t0u:A (3.12) BS01 rna ? GO:0003723 ... H6QM92 32304664
    550411 6t0u:B (3.12) BS01 rna 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550412 6t0u:C (3.12) BS01 rna ? GO:0003723 ... H6QM90 32304664
    550413 6t0v:A (3.02) BS01 rna ? GO:0003723 ... H6QM92 32304664
    550414 6t0v:A (3.02) BS02 M4H ? GO:0003723 ... H6QM92 32304664
    550415 6t0v:A (3.02) BS03 MG ? GO:0003723 ... H6QM92 32304664
    550416 6t0v:A (3.02) BS04 MG ? GO:0003723 ... H6QM92 32304664
    550417 6t0v:B (3.02) BS01 rna 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550418 6t0v:B (3.02) BS02 rna 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550419 6t0v:B (3.02) BS03 rna 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550420 6t0v:B (3.02) BS04 2KH 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550421 6t0v:B (3.02) BS05 MG 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550422 6t0v:B (3.02) BS06 MG 2.7.7.48 GO:0001172 ... H6QM91 32304664
    550423 6t0v:C (3.02) BS01 rna ? GO:0003723 ... H6QM90 32304664
    550424 6t0v:C (3.02) BS02 rna ? GO:0003723 ... H6QM90 32304664
    550425 6t0w:A (3.18) BS01 rna 3.1.-.- GO:0003723 ... Q5V8Z9 32304664
    550426 6t0w:B (3.18) BS01 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 32304664
    550427 6t0w:C (3.18) BS01 rna ? GO:0001172 ... Q5V8X3 32304664
    550428 6t0x:A (1.36) BS01 M6W ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50>1000uM
    550429 6t0x:B (1.36) BS01 M6W ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50>1000uM
    550430 6t0y:A (1.2) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    550431 6t0y:A (1.2) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    550432 6t0z:A (1.43) BS01 M75 ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50>1000uM
    550433 6t0z:B (1.43) BS01 M75 ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50>1000uM
    550434 6t10:A (1.48) BS01 M6Z ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50=348uM
    550435 6t10:B (1.48) BS01 M6Z ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50=348uM
    550436 6t11:B (1.49) BS01 O2A ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50=402uM
    550437 6t12:A (1.46) BS01 M78 ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50=825uM
    550438 6t12:B (1.46) BS01 M78 ? GO:0003723 ... Q96MU7 32101404 MOAD: ic50=825uM
    550439 6t13:A (1.85) BS01 M7H 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004348 ... P04062 33238058
    550440 6t13:B (1.85) BS01 M7H 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004348 ... P04062 33238058
    550441 6t13:C (1.85) BS01 M7H 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004348 ... P04062 33238058
    550442 6t13:D (1.85) BS01 M7H 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004348 ... P04062 33238058
    550443 6t15:C (3.29) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 32291341
    550444 6t15:C (3.29) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 32291341
    550445 6t15:D (3.29) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 32291341
    550446 6t15:E (3.29) BS01 FES 7.1.1.8 GO:0008121 ... P08067 32291341
    550447 6t15:N (3.29) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 32291341
    550448 6t15:N (3.29) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 32291341
    550449 6t15:O (3.29) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 32291341
    550450 6t15:P (3.29) BS01 FES 7.1.1.8 GO:0008121 ... P08067 32291341
    550451 6t15:a (3.29) BS01 CU 7.1.1.9 GO:0004129 ... P00401 32291341
    550452 6t15:a (3.29) BS02 HEA 7.1.1.9 GO:0004129 ... P00401 32291341
    550453 6t15:a (3.29) BS03 HEA 7.1.1.9 GO:0004129 ... P00401 32291341
    550454 6t15:a (3.29) BS04 MG 7.1.1.9 GO:0004129 ... P00401 32291341
    550455 6t15:b (3.29) BS01 HEA 7.1.1.9 GO:0004129 ... P00410 32291341
    550456 6t15:b (3.29) BS02 CUA 7.1.1.9 GO:0004129 ... P00410 32291341
    550457 6t15:d (3.29) BS01 ZN 1.9.3.1 GO:0005740 ... P04037 32291341
    550458 6t16:A (3.1) BS01 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550459 6t16:A (3.1) BS02 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550460 6t16:A (3.1) BS03 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550461 6t16:A (3.1) BS04 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550462 6t16:B (3.1) BS01 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550463 6t16:B (3.1) BS02 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550464 6t16:B (3.1) BS03 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550465 6t16:B (3.1) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550466 6t18:A (3.15) BS01 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550467 6t18:A (3.15) BS02 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550468 6t18:A (3.15) BS03 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550469 6t18:B (3.15) BS01 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550470 6t18:B (3.15) BS02 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550471 6t18:B (3.15) BS03 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550472 6t18:B (3.15) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550473 6t1b:A (1.2) BS01 NOS 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    550474 6t1b:A (1.2) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    550475 6t1b:A (1.2) BS03 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    550476 6t1d:A (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    550477 6t1d:A (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    550478 6t1d:A (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    550479 6t1d:A (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    550480 6t1d:B (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    550481 6t1d:B (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    550482 6t1d:B (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    550483 6t1d:B (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    550484 6t1d:C (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    550485 6t1d:C (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    550486 6t1d:C (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    550487 6t1d:C (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    550488 6t1d:D (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    550489 6t1d:D (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    550490 6t1d:D (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    550491 6t1d:D (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    550492 6t1d:E (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    550493 6t1d:E (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    550494 6t1d:E (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    550495 6t1d:E (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    550496 6t1d:F (2.2) BS01 GLA ? GO:0046872 ... E7E2M2 31985778
    550497 6t1d:F (2.2) BS02 GLA ? GO:0046872 ... E7E2M2 31985778
    550498 6t1d:F (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    550499 6t1d:F (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    550500 6t1e:A (1.3) BS01 HL9 ? GO:0005576 ... P22629 33400831
    550501 6t1f:A (2.9) BS01 dna ? GO:0003677 ... B8GW30 34397383
    550502 6t1f:A (2.9) BS02 dna ? GO:0003677 ... B8GW30 34397383
    550503 6t1f:B (2.9) BS01 dna ? GO:0003677 ... B8GW30 34397383
    550504 6t1f:B (2.9) BS02 dna ? GO:0003677 ... B8GW30 34397383
    550505 6t1f:C (2.9) BS01 dna ? GO:0003677 ... B8GW30 34397383
    550506 6t1f:C (2.9) BS02 dna ? GO:0003677 ... B8GW30 34397383
    550507 6t1f:D (2.9) BS01 dna ? GO:0003677 ... B8GW30 34397383
    550508 6t1f:D (2.9) BS02 dna ? GO:0003677 ... B8GW30 34397383
    550509 6t1g:A (1.9) BS01 HL9 ? GO:0005576 ... P22629 33400831
    550510 6t1g:B (1.9) BS01 HL9 ? GO:0005576 ... P22629 33400831
    550511 6t1i:A (1.8) BS01 M7W ? N/A Q03111 31857843
    550512 6t1j:A (1.97) BS01 M7T ? N/A Q03111 31857843
    550513 6t1k:A (1.2) BS01 HL9 ? GO:0005576 ... P22629 33400831
    550514 6t1l:A (2.0) BS01 M7N ? N/A Q03111 31857843
    550515 6t1m:A (1.85) BS01 M8K ? N/A Q03111 31857843
    550516 6t1n:A (1.95) BS01 M7Z ? N/A Q03111 31857843
    550517 6t1o:A (1.9) BS01 M82 ? N/A Q03111 31857843
    550518 6t1p:A (3.5) BS01 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550519 6t1p:A (3.5) BS02 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550520 6t1p:A (3.5) BS03 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550521 6t1p:A (3.5) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550522 6t1p:B (3.5) BS01 GLC 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550523 6t1p:B (3.5) BS02 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    550524 6t1s:A (1.65) BS01 EDK ? GO:0003677 ... P37231 N/A BindingDB: EC50=130nM, Ki=0.049700nM
    550525 6t1t:A (2.08) BS01 FAD 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550526 6t1t:A (2.08) BS02 FMN 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550527 6t1t:A (2.08) BS03 NDP 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550528 6t1t:B (2.08) BS01 FAD 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550529 6t1t:B (2.08) BS02 FMN 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550530 6t1t:B (2.08) BS03 NDP 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550531 6t1u:A (1.5) BS01 FAD 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550532 6t1u:A (1.5) BS02 FMN 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550533 6t1u:B (1.5) BS01 FAD 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550534 6t1u:B (1.5) BS02 FMN 1.6.2.4 GO:0000166 ... Q5PXH3 31882753
    550535 6t1v:A (2.21) BS01 peptide ? GO:0003677 ... P37231 N/A
    550536 6t1v:A (2.21) BS02 EDK ? GO:0003677 ... P37231 N/A BindingDB: EC50=130nM, Ki=0.049700nM
    550537 6t1y:A (3.3) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550538 6t1y:A (3.3) BS02 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550539 6t1y:A (3.3) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550540 6t1y:B (3.3) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550541 6t1y:B (3.3) BS02 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550542 6t1y:B (3.3) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550543 6t1y:C (3.3) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550544 6t1y:C (3.3) BS02 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550545 6t1y:C (3.3) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550546 6t1y:D (3.3) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550547 6t1y:D (3.3) BS02 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550548 6t1y:D (3.3) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550549 6t1y:E (3.3) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550550 6t1y:E (3.3) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550551 6t1z:A (2.9) BS01 HT1 ? GO:0005886 ... Q48658 32719456
    550552 6t20:A (3.7) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550553 6t20:A (3.7) BS02 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550554 6t20:A (3.7) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550555 6t20:B (3.7) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550556 6t20:B (3.7) BS02 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550557 6t20:B (3.7) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550558 6t20:C (3.7) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550559 6t20:C (3.7) BS02 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550560 6t20:C (3.7) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550561 6t20:D (3.7) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550562 6t20:D (3.7) BS02 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550563 6t20:D (3.7) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550564 6t20:E (3.7) BS01 peptide 3.6.4.- GO:0000287 ... P68135 32084355
    550565 6t20:E (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550566 6t21:A (2.07) BS01 dna 3.1.21.- N/A P24200 31724709
    550567 6t21:A (2.07) BS02 dna 3.1.21.- N/A P24200 31724709
    550568 6t21:B (2.07) BS01 dna 3.1.21.- N/A P24200 31724709
    550569 6t21:B (2.07) BS02 dna 3.1.21.- N/A P24200 31724709
    550570 6t22:A (2.21) BS01 dna 3.1.21.- N/A P24200 31724709
    550571 6t22:A (2.21) BS02 dna 3.1.21.- N/A P24200 31724709
    550572 6t22:B (2.21) BS01 dna 3.1.21.- N/A P24200 31724709
    550573 6t22:B (2.21) BS02 dna 3.1.21.- N/A P24200 31724709
    550574 6t23:A (3.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550575 6t23:A (3.1) BS02 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    550576 6t23:A (3.1) BS03 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550577 6t23:A (3.1) BS04 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550578 6t23:B (3.1) BS01 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550579 6t23:B (3.1) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550580 6t23:B (3.1) BS03 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    550581 6t23:B (3.1) BS04 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550582 6t23:C (3.1) BS01 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550583 6t23:C (3.1) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550584 6t23:C (3.1) BS03 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    550585 6t23:C (3.1) BS04 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550586 6t23:D (3.1) BS01 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550587 6t23:D (3.1) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550588 6t23:D (3.1) BS03 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    550589 6t23:D (3.1) BS04 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550590 6t23:E (3.1) BS01 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550591 6t23:E (3.1) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550592 6t23:E (3.1) BS03 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    550593 6t24:A (3.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550594 6t24:A (3.7) BS02 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550595 6t24:A (3.7) BS03 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550596 6t24:B (3.7) BS01 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550597 6t24:B (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    550598 6t24:B (3.7) BS03 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550599 6t24:C (3.7) BS01 9ZK 3.6.4.- GO:0000287 ... P68135 32084355
    550600 6t24:C (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
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