SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    550801 6t4q:LL (2.6) BS01 rna ? GO:0002181 ... Q12690 31858614
    550802 6t4q:LL (2.6) BS02 rna ? GO:0002181 ... Q12690 31858614
    550803 6t4q:LM (2.6) BS01 rna ? GO:0000027 ... P36105 31858614
    550804 6t4q:LN (2.6) BS01 rna ? GO:0002181 ... P05748 31858614
    550805 6t4q:LN (2.6) BS02 rna ? GO:0002181 ... P05748 31858614
    550806 6t4q:LN (2.6) BS03 MG ? GO:0002181 ... P05748 31858614
    550807 6t4q:LO (2.6) BS01 rna ? GO:0000470 ... P26784 31858614
    550808 6t4q:LP (2.6) BS01 rna ? GO:0000448 ... P05740 31858614
    550809 6t4q:LP (2.6) BS02 rna ? GO:0000448 ... P05740 31858614
    550810 6t4q:LQ (2.6) BS01 rna ? GO:0002181 ... P0CX49 31858614
    550811 6t4q:LR (2.6) BS01 rna ? GO:0002181 ... P0CX82 31858614
    550812 6t4q:LR (2.6) BS02 rna ? GO:0002181 ... P0CX82 31858614
    550813 6t4q:LS (2.6) BS01 rna ? GO:0002181 ... P0CX23 31858614
    550814 6t4q:LS (2.6) BS02 rna ? GO:0002181 ... P0CX23 31858614
    550815 6t4q:LT (2.6) BS01 rna ? GO:0002181 ... Q02753 31858614
    550816 6t4q:LT (2.6) BS02 rna ? GO:0002181 ... Q02753 31858614
    550817 6t4q:LU (2.6) BS01 rna ? GO:0003735 ... P05749 31858614
    550818 6t4q:LV (2.6) BS01 rna ? GO:0002181 ... P0CX41 31858614
    550819 6t4q:LW (2.6) BS01 rna ? GO:0003735 ... P04449 31858614
    550820 6t4q:LW (2.6) BS02 rna ? GO:0003735 ... P04449 31858614
    550821 6t4q:LX (2.6) BS01 rna ? GO:0003735 ... P04456 31858614
    550822 6t4q:LX (2.6) BS02 rna ? GO:0003735 ... P04456 31858614
    550823 6t4q:LY (2.6) BS01 rna ? GO:0002181 ... P05743 31858614
    550824 6t4q:LY (2.6) BS02 rna ? GO:0002181 ... P05743 31858614
    550825 6t4q:LZ (2.6) BS01 rna ? GO:0002181 ... P0C2H6 31858614
    550826 6t4q:La (2.6) BS01 rna ? GO:0002181 ... P02406 31858614
    550827 6t4q:Lb (2.6) BS01 rna ? GO:0002181 ... P05747 31858614
    550828 6t4q:Lc (2.6) BS01 rna ? GO:0002181 ... P14120 31858614
    550829 6t4q:Ld (2.6) BS01 rna ? GO:0002181 ... P0C2H8 31858614
    550830 6t4q:Le (2.6) BS01 rna ? GO:0002181 ... P38061 31858614
    550831 6t4q:Le (2.6) BS02 MG ? GO:0002181 ... P38061 31858614
    550832 6t4q:Lf (2.6) BS01 rna ? GO:0000027 ... P05744 31858614
    550833 6t4q:Lg (2.6) BS01 rna ? GO:0002181 ... P87262 31858614
    550834 6t4q:Lg (2.6) BS02 MG ? GO:0002181 ... P87262 31858614
    550835 6t4q:Lh (2.6) BS01 rna ? GO:0000463 ... P0CX84 31858614
    550836 6t4q:Lh (2.6) BS02 rna ? GO:0000463 ... P0CX84 31858614
    550837 6t4q:Li (2.6) BS01 rna ? GO:0002181 ... P05745 31858614
    550838 6t4q:Lj (2.6) BS01 rna ? GO:0000448 ... P49166 31858614
    550839 6t4q:Lj (2.6) BS02 rna ? GO:0000448 ... P49166 31858614
    550840 6t4q:Lj (2.6) BS03 ZN ? GO:0000448 ... P49166 31858614
    550841 6t4q:Lk (2.6) BS01 rna ? GO:0002181 ... P49167 31858614
    550842 6t4q:Ll (2.6) BS01 rna ? GO:0002181 ... P04650 31858614
    550843 6t4q:Ll (2.6) BS02 rna ? GO:0002181 ... P04650 31858614
    550844 6t4q:Lm (2.6) BS01 rna ? GO:0003735 ... P0CH08 31858614
    550845 6t4q:Lm (2.6) BS02 ZN ? GO:0003735 ... P0CH08 31858614
    550846 6t4q:Lo (2.6) BS01 rna ? GO:0002181 ... P0CX27 31858614
    550847 6t4q:Lo (2.6) BS02 rna ? GO:0002181 ... P0CX27 31858614
    550848 6t4q:Lo (2.6) BS03 ZN ? GO:0002181 ... P0CX27 31858614
    550849 6t4q:Lp (2.6) BS01 rna ? GO:0002181 ... P0CX25 31858614
    550850 6t4q:Lp (2.6) BS02 ZN ? GO:0002181 ... P0CX25 31858614
    550851 6t4q:SA (2.6) BS01 rna ? GO:0003735 ... P32905 31858614
    550852 6t4q:SB (2.6) BS01 rna ? GO:0000462 ... P33442 31858614
    550853 6t4q:SB (2.6) BS02 rna ? GO:0000462 ... P33442 31858614
    550854 6t4q:SC (2.6) BS01 rna ? GO:0003723 ... P25443 31858614
    550855 6t4q:SD (2.6) BS01 rna ? GO:0000054 ... P05750 31858614
    550856 6t4q:SE (2.6) BS01 rna ? GO:0002181 ... P0CX35 31858614
    550857 6t4q:SF (2.6) BS01 rna ? GO:0003723 ... A0A1L4AA68 31858614
    550858 6t4q:SF (2.6) BS02 rna ? GO:0003723 ... A0A1L4AA68 31858614
    550859 6t4q:SF (2.6) BS03 rna ? GO:0003723 ... A0A1L4AA68 31858614
    550860 6t4q:SF (2.6) BS04 MG ? GO:0003723 ... A0A1L4AA68 31858614
    550861 6t4q:SG (2.6) BS01 rna ? GO:0000462 ... P0CX37 31858614
    550862 6t4q:SH (2.6) BS01 rna ? GO:0002181 ... P26786 31858614
    550863 6t4q:SI (2.6) BS01 rna ? GO:0000462 ... P0CX39 31858614
    550864 6t4q:SI (2.6) BS02 rna ? GO:0000462 ... P0CX39 31858614
    550865 6t4q:SJ (2.6) BS01 rna ? GO:0000462 ... O13516 31858614
    550866 6t4q:SK (2.6) BS01 rna ? N/A Q08745 31858614
    550867 6t4q:SL (2.6) BS01 rna ? GO:0000028 ... P0CX47 31858614
    550868 6t4q:SM (2.6) BS01 rna ? GO:0003735 ... P48589 31858614
    550869 6t4q:SN (2.6) BS01 rna ? GO:0000462 ... P05756 31858614
    550870 6t4q:SN (2.6) BS02 rna ? GO:0000462 ... P05756 31858614
    550871 6t4q:SO (2.6) BS01 rna ? GO:0000028 ... P39516 31858614
    550872 6t4q:SP (2.6) BS01 rna ? GO:0003723 ... Q01855 31858614
    550873 6t4q:SQ (2.6) BS01 rna ? GO:0000462 ... P0CX51 31858614
    550874 6t4q:SR (2.6) BS01 rna ? GO:0000028 ... P02407 31858614
    550875 6t4q:SS (2.6) BS01 rna ? GO:0000054 ... P0CX55 31858614
    550876 6t4q:ST (2.6) BS01 rna ? GO:0000028 ... P07280 31858614
    550877 6t4q:SU (2.6) BS01 rna ? GO:0003723 ... P38701 31858614
    550878 6t4q:SV (2.6) BS01 rna ? GO:0000447 ... P0C0V8 31858614
    550879 6t4q:SW (2.6) BS01 rna ? GO:0002181 ... P0C0W1 31858614
    550880 6t4q:SX (2.6) BS01 rna ? GO:0000462 ... P0CX29 31858614
    550881 6t4q:SY (2.6) BS01 rna ? GO:0000462 ... P0CX31 31858614
    550882 6t4q:SZ (2.6) BS01 rna ? N/A Q3E792 31858614
    550883 6t4q:SZ (2.6) BS02 rna ? N/A Q3E792 31858614
    550884 6t4q:Sa (2.6) BS01 rna ? GO:0003735 ... P39939 31858614
    550885 6t4q:Sa (2.6) BS02 rna ? GO:0003735 ... P39939 31858614
    550886 6t4q:Sb (2.6) BS01 rna ? GO:0000028 ... P35997 31858614
    550887 6t4q:Sc (2.6) BS01 rna ? GO:0000028 ... Q3E7X9 31858614
    550888 6t4q:Sd (2.6) BS01 rna ? GO:0002181 ... P41057 31858614
    550889 6t4q:Sd (2.6) BS02 ZN ? GO:0002181 ... P41057 31858614
    550890 6t4q:Se (2.6) BS01 rna ? GO:0002181 ... P0CX33 31858614
    550891 6t4q:Sf (2.6) BS01 rna ? GO:0003735 ... P05759 31858614
    550892 6t4q:Sf (2.6) BS02 ZN ? GO:0003735 ... P05759 31858614
    550893 6t4q:Sg (2.6) BS01 rna ? GO:0001965 ... P38011 31858614
    550894 6t4t:A (1.62) BS01 L3E ? GO:0003677 ... P51449 33536342
    550895 6t4t:A (1.62) BS02 HCD ? GO:0003677 ... P51449 33536342
    550896 6t4u:A (2.0) BS01 HCD ? GO:0003677 ... P51449 33536342
    550897 6t4u:A (2.0) BS02 4F1 ? GO:0003677 ... P51449 33536342 BindingDB: IC50=7.8nM, EC50=16nM
    550898 6t4v:A (1.807) BS01 PYR 4.1.3.30 GO:0000287 ... Q9I5E2 N/A
    550899 6t4v:B (1.807) BS01 PYR 4.1.3.30 GO:0000287 ... Q9I5E2 N/A
    550900 6t4v:C (1.807) BS01 PYR 4.1.3.30 GO:0000287 ... Q9I5E2 N/A
    550901 6t4v:D (1.807) BS01 PYR 4.1.3.30 GO:0000287 ... Q9I5E2 N/A
    550902 6t4w:A (1.71) BS01 MJE ? GO:0003677 ... P51449 33536342
    550903 6t4w:A (1.71) BS02 HCD ? GO:0003677 ... P51449 33536342
    550904 6t4x:A (1.48) BS01 HC3 ? GO:0003677 ... P51449 33536342 BindingDB: EC50=20nM
    550905 6t4x:A (1.48) BS02 L3E ? GO:0003677 ... P51449 33536342
    550906 6t4y:A (1.95) BS01 HC3 ? GO:0003677 ... P51449 33536342 BindingDB: EC50=20nM
    550907 6t4y:A (1.95) BS02 4F1 ? GO:0003677 ... P51449 33536342 BindingDB: IC50=7.8nM, EC50=16nM
    550908 6t50:A (1.87) BS01 HC3 ? GO:0003677 ... P51449 33536342 BindingDB: EC50=20nM
    550909 6t50:A (1.87) BS02 MJE ? GO:0003677 ... P51449 33536342
    550910 6t52:H (1.45) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550911 6t52:H (1.45) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550912 6t52:H (1.45) BS03 MJH 3.4.21.5 GO:0004252 ... P00734 N/A
    550913 6t53:H (1.35) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550914 6t53:H (1.35) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550915 6t53:H (1.35) BS03 K73 3.4.21.5 GO:0004252 ... P00734 N/A
    550916 6t54:H (1.57) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550917 6t54:H (1.57) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550918 6t54:H (1.57) BS03 MJK 3.4.21.5 GO:0004252 ... P00734 N/A
    550919 6t55:H (1.39) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550920 6t55:H (1.39) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550921 6t55:H (1.39) BS03 02N 3.4.21.5 GO:0004252 ... P00734 N/A
    550922 6t56:H (1.31) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550923 6t56:H (1.31) BS02 ABN 3.4.21.5 GO:0004252 ... P00734 N/A
    550924 6t56:H (1.31) BS03 ABN 3.4.21.5 GO:0004252 ... P00734 N/A
    550925 6t57:H (1.57) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550926 6t57:H (1.57) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    550927 6t57:H (1.57) BS03 J3I 3.4.21.5 GO:0004252 ... P00734 N/A
    550928 6t57:H (1.57) BS04 TFA 3.4.21.5 GO:0004252 ... P00734 N/A
    550929 6t58:A (3.1) BS01 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550930 6t58:A (3.1) BS02 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550931 6t58:A (3.1) BS03 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550932 6t58:A (3.1) BS04 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550933 6t58:A (3.1) BS05 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550934 6t58:A (3.1) BS06 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550935 6t58:A (3.1) BS07 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550936 6t58:A (3.1) BS08 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550937 6t58:A (3.1) BS09 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550938 6t58:A (3.1) BS10 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550939 6t58:B (3.1) BS01 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550940 6t58:B (3.1) BS02 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550941 6t58:B (3.1) BS03 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550942 6t58:B (3.1) BS04 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550943 6t58:B (3.1) BS05 CA ? GO:0001525 ... P04637
    P07355
    P26447
    32442400
    550944 6t59:1 (3.11) BS01 rna N/A GO:0005525 ... N/A 31727855
    550945 6t59:A3 (3.11) BS01 rna ? GO:0002181 ... G1TT27 31727855
    550946 6t59:B3 (3.11) BS01 rna ? GO:0003723 ... G1TL06 31727855
    550947 6t59:C3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    550948 6t59:C3 (3.11) BS02 rna N/A GO:0003735 ... N/A 31727855
    550949 6t59:D3 (3.11) BS01 rna ? GO:0000027 ... P19949 31727855
    550950 6t59:D3 (3.11) BS02 rna ? GO:0000027 ... P19949 31727855
    550951 6t59:E3 (3.11) BS01 rna ? GO:0000027 ... G1SKF7 31727855
    550952 6t59:F3 (3.11) BS01 rna ? GO:0000463 ... G1TUB1 31727855
    550953 6t59:F3 (3.11) BS02 rna ? GO:0000463 ... G1TUB1 31727855
    550954 6t59:G3 (3.11) BS01 rna N/A GO:0003723 ... N/A 31727855
    550955 6t59:G3 (3.11) BS02 rna N/A GO:0003723 ... N/A 31727855
    550956 6t59:H3 (3.11) BS01 rna ? GO:0002181 ... G1SWI6 31727855
    550957 6t59:I3 (3.11) BS01 rna ? GO:0003735 ... B7NZQ2 31727855
    550958 6t59:I3 (3.11) BS02 rna ? GO:0003735 ... B7NZQ2 31727855
    550959 6t59:J3 (3.11) BS01 rna ? GO:0003735 ... G1TUB8 31727855
    550960 6t59:J3 (3.11) BS02 rna ? GO:0003735 ... G1TUB8 31727855
    550961 6t59:L3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    550962 6t59:M3 (3.11) BS01 rna ? GO:0003723 ... G1SZ12 31727855
    550963 6t59:N3 (3.11) BS01 rna ? GO:0002181 ... G1T0C1 31727855
    550964 6t59:N3 (3.11) BS02 rna ? GO:0002181 ... G1T0C1 31727855
    550965 6t59:O3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    550966 6t59:P3 (3.11) BS01 rna ? GO:0002181 ... G1SCJ6 31727855
    550967 6t59:P3 (3.11) BS02 rna ? GO:0002181 ... G1SCJ6 31727855
    550968 6t59:Q3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    550969 6t59:R3 (3.11) BS01 rna N/A GO:0003723 ... N/A 31727855
    550970 6t59:R3 (3.11) BS02 peptide N/A GO:0003723 ... N/A 31727855
    550971 6t59:S3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    550972 6t59:S3 (3.11) BS02 rna N/A GO:0003735 ... N/A 31727855
    550973 6t59:T3 (3.11) BS01 rna ? GO:0003735 ... G1SHQ2 31727855
    550974 6t59:T3 (3.11) BS02 rna ? GO:0003735 ... G1SHQ2 31727855
    550975 6t59:U3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    550976 6t59:U3 (3.11) BS02 peptide N/A GO:0003735 ... N/A 31727855
    550977 6t59:V3 (3.11) BS01 rna ? GO:0003735 ... G1T6D1 31727855
    550978 6t59:W3 (3.11) BS01 rna ? GO:0000027 ... G1SE28 31727855
    550979 6t59:X3 (3.11) BS01 rna ? GO:0003735 ... G1SE76 31727855
    550980 6t59:X3 (3.11) BS02 rna ? GO:0003735 ... G1SE76 31727855
    550981 6t59:Y3 (3.11) BS01 rna ? GO:0003723 ... G1SQH0 31727855
    550982 6t59:Y3 (3.11) BS02 rna ? GO:0003723 ... G1SQH0 31727855
    550983 6t59:Z3 (3.11) BS01 rna ? GO:0003735 ... G1TXF6 31727855
    550984 6t59:a3 (3.11) BS01 rna ? GO:0003735 ... G1SNY0 31727855
    550985 6t59:b3 (3.11) BS01 rna ? GO:0002181 ... G1SGR6 31727855
    550986 6t59:c3 (3.11) BS01 rna ? GO:0002181 ... G1TDL2 31727855
    550987 6t59:d3 (3.11) BS01 rna ? GO:0002181 ... G1SHG0 31727855
    550988 6t59:e3 (3.11) BS01 rna ? GO:0003735 ... G1TUN8 31727855
    550989 6t59:f3 (3.11) BS01 rna ? GO:0000049 ... G1SF08 31727855
    550990 6t59:g3 (3.11) BS01 rna ? GO:0003735 ... G1TXG5 31727855
    550991 6t59:g3 (3.11) BS02 ZN ? GO:0003735 ... G1TXG5 31727855
    550992 6t59:g3 (3.11) BS03 MG ? GO:0003735 ... G1TXG5 31727855
    550993 6t59:h3 (3.11) BS01 rna ? GO:0000463 ... G1SIT5 31727855
    550994 6t59:h3 (3.11) BS02 rna ? GO:0000463 ... G1SIT5 31727855
    550995 6t59:i3 (3.11) BS01 rna ? GO:0003735 ... G1TTQ5 31727855
    550996 6t59:j3 (3.11) BS01 rna ? GO:0003723 ... U3KPD5 31727855
    550997 6t59:j3 (3.11) BS02 rna ? GO:0003723 ... U3KPD5 31727855
    550998 6t59:j3 (3.11) BS03 ZN ? GO:0003723 ... U3KPD5 31727855
    550999 6t59:k3 (3.11) BS01 rna ? GO:0003735 ... G1U001 31727855
    551000 6t59:l3 (3.11) BS01 rna ? GO:0003735 ... G1TTN1 31727855

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).