SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    551201 6t7a:D (3.7) BS02 dna ? GO:0000786 ... O60814 32350470
    551202 6t7a:E (3.7) BS01 dna ? GO:0000786 ... Q71DI3 32350470
    551203 6t7a:E (3.7) BS02 dna ? GO:0000786 ... Q71DI3 32350470
    551204 6t7a:F (3.7) BS01 dna ? GO:0000781 ... P62805 32350470
    551205 6t7a:F (3.7) BS02 dna ? GO:0000781 ... P62805 32350470
    551206 6t7a:G (3.7) BS01 dna ? GO:0000786 ... P04908 32350470
    551207 6t7a:G (3.7) BS02 dna ? GO:0000786 ... P04908 32350470
    551208 6t7a:H (3.7) BS01 dna ? GO:0000786 ... O60814 32350470
    551209 6t7b:A (5.1) BS01 dna ? GO:0000786 ... Q71DI3 32350470
    551210 6t7b:B (5.1) BS01 dna ? GO:0000781 ... P62805 32350470
    551211 6t7b:C (5.1) BS01 dna ? GO:0000786 ... P04908 32350470
    551212 6t7b:C (5.1) BS02 dna ? GO:0000786 ... P04908 32350470
    551213 6t7b:E (5.1) BS01 dna ? GO:0000786 ... Q71DI3 32350470
    551214 6t7b:F (5.1) BS01 dna ? GO:0000781 ... P62805 32350470
    551215 6t7b:G (5.1) BS01 dna ? GO:0000786 ... P04908 32350470
    551216 6t7b:G (5.1) BS02 dna ? GO:0000786 ... P04908 32350470
    551217 6t7c:A (4.0) BS01 dna ? GO:0000786 ... Q71DI3 32350470
    551218 6t7c:A (4.0) BS02 dna ? GO:0000786 ... Q71DI3 32350470
    551219 6t7c:B (4.0) BS01 dna ? GO:0000781 ... P62805 32350470
    551220 6t7c:B (4.0) BS02 dna ? GO:0000781 ... P62805 32350470
    551221 6t7c:C (4.0) BS01 dna ? GO:0000786 ... P04908 32350470
    551222 6t7c:C (4.0) BS02 dna ? GO:0000786 ... P04908 32350470
    551223 6t7c:D (4.0) BS01 dna ? GO:0000786 ... O60814 32350470
    551224 6t7c:D (4.0) BS02 dna ? GO:0000786 ... O60814 32350470
    551225 6t7c:E (4.0) BS01 dna ? GO:0000786 ... Q71DI3 32350470
    551226 6t7c:E (4.0) BS02 dna ? GO:0000786 ... Q71DI3 32350470
    551227 6t7c:F (4.0) BS01 dna ? GO:0000781 ... P62805 32350470
    551228 6t7c:F (4.0) BS02 dna ? GO:0000781 ... P62805 32350470
    551229 6t7c:G (4.0) BS01 dna ? GO:0000786 ... P04908 32350470
    551230 6t7c:G (4.0) BS02 dna ? GO:0000786 ... P04908 32350470
    551231 6t7c:H (4.0) BS01 dna ? GO:0000786 ... O60814 32350470
    551232 6t7d:A (4.4) BS01 dna ? GO:0000786 ... Q71DI3 32350470
    551233 6t7d:B (4.4) BS01 dna ? GO:0000781 ... P62805 32350470
    551234 6t7d:C (4.4) BS01 dna ? GO:0000786 ... P04908 32350470
    551235 6t7d:C (4.4) BS02 dna ? GO:0000786 ... P04908 32350470
    551236 6t7d:D (4.4) BS01 dna ? GO:0000786 ... O60814 32350470
    551237 6t7d:E (4.4) BS01 dna ? GO:0000786 ... Q71DI3 32350470
    551238 6t7d:E (4.4) BS02 dna ? GO:0000786 ... Q71DI3 32350470
    551239 6t7d:F (4.4) BS01 dna ? GO:0000781 ... P62805 32350470
    551240 6t7d:G (4.4) BS01 dna ? GO:0000786 ... P04908 32350470
    551241 6t7d:H (4.4) BS01 dna ? GO:0000786 ... O60814 32350470
    551242 6t7f:A (2.58) BS01 ZN 2.3.2.33 N/A O75592 32747811
    551243 6t7f:A (2.58) BS02 ZN 2.3.2.33 N/A O75592 32747811
    551244 6t7f:A (2.58) BS03 ZN 2.3.2.33 N/A O75592 32747811
    551245 6t7f:A (2.58) BS04 ZN 2.3.2.33 N/A O75592 32747811
    551246 6t7f:A (2.58) BS05 ZN 2.3.2.33 N/A O75592 32747811
    551247 6t7f:A (2.58) BS06 ZN 2.3.2.33 N/A O75592 32747811
    551248 6t7f:B (2.58) BS01 LWZ 2.3.2.23
    2.3.2.24
    GO:0000122 ... P61077 32747811
    551249 6t7g:AAA (1.8) BS01 MVL ? GO:0004565 ... I9SUA3 31871050
    551250 6t7g:BBB (1.8) BS01 MVL ? GO:0004565 ... I9SUA3 31871050
    551251 6t7g:CCC (1.8) BS01 MVL ? GO:0004565 ... I9SUA3 31871050
    551252 6t7g:DDD (1.8) BS01 MVL ? GO:0004565 ... I9SUA3 31871050
    551253 6t7g:EEE (1.8) BS01 MVL ? GO:0004565 ... I9SUA3 31871050
    551254 6t7g:FFF (1.8) BS01 MVL ? GO:0004565 ... I9SUA3 31871050
    551255 6t7h:B (2.32) BS01 MRQ 3.4.21.5 GO:0004252 ... P00734 34094158
    551256 6t7h:H (2.32) BS01 MRQ 3.4.21.5 GO:0004252 ... P00734 34094158
    551257 6t7i:LA (3.2) BS01 rna ? GO:0002181 ... P0CX45 31858614
    551258 6t7i:LA (3.2) BS02 rna ? GO:0002181 ... P0CX45 31858614
    551259 6t7i:LB (3.2) BS01 rna ? GO:0000027 ... P14126 31858614
    551260 6t7i:LC (3.2) BS01 rna ? GO:0002181 ... P10664 31858614
    551261 6t7i:LC (3.2) BS02 rna ? GO:0002181 ... P10664 31858614
    551262 6t7i:LD (3.2) BS01 rna ? GO:0000027 ... P26321 31858614
    551263 6t7i:LD (3.2) BS02 rna ? GO:0000027 ... P26321 31858614
    551264 6t7i:LE (3.2) BS01 rna ? GO:0000027 ... P05739 31858614
    551265 6t7i:LF (3.2) BS01 rna ? GO:0000463 ... P05737 31858614
    551266 6t7i:LF (3.2) BS02 rna ? GO:0000463 ... P05737 31858614
    551267 6t7i:LG (3.2) BS01 rna ? GO:0000470 ... P17076 31858614
    551268 6t7i:LG (3.2) BS02 rna ? GO:0000470 ... P17076 31858614
    551269 6t7i:LH (3.2) BS01 rna ? GO:0002181 ... P05738 31858614
    551270 6t7i:LI (3.2) BS01 rna ? GO:0000027 ... P41805 31858614
    551271 6t7i:LI (3.2) BS02 rna ? GO:0000027 ... P41805 31858614
    551272 6t7i:LJ (3.2) BS01 rna ? GO:0000027 ... P0C0W9 31858614
    551273 6t7i:LJ (3.2) BS02 rna ? GO:0000027 ... P0C0W9 31858614
    551274 6t7i:LL (3.2) BS01 rna ? GO:0002181 ... Q12690 31858614
    551275 6t7i:LM (3.2) BS01 rna ? GO:0000027 ... P36105 31858614
    551276 6t7i:LN (3.2) BS01 rna ? GO:0002181 ... P05748 31858614
    551277 6t7i:LN (3.2) BS02 rna ? GO:0002181 ... P05748 31858614
    551278 6t7i:LO (3.2) BS01 rna ? GO:0000470 ... P26784 31858614
    551279 6t7i:LP (3.2) BS01 rna ? GO:0000448 ... P05740 31858614
    551280 6t7i:LP (3.2) BS02 rna ? GO:0000448 ... P05740 31858614
    551281 6t7i:LQ (3.2) BS01 rna ? GO:0002181 ... P0CX49 31858614
    551282 6t7i:LR (3.2) BS01 rna ? GO:0002181 ... P0CX82 31858614
    551283 6t7i:LR (3.2) BS02 rna ? GO:0002181 ... P0CX82 31858614
    551284 6t7i:LS (3.2) BS01 rna ? GO:0002181 ... P0CX23 31858614
    551285 6t7i:LS (3.2) BS02 rna ? GO:0002181 ... P0CX23 31858614
    551286 6t7i:LT (3.2) BS01 rna ? GO:0002181 ... Q02753 31858614
    551287 6t7i:LT (3.2) BS02 rna ? GO:0002181 ... Q02753 31858614
    551288 6t7i:LU (3.2) BS01 rna ? GO:0002181 ... P05749 31858614
    551289 6t7i:LV (3.2) BS01 rna ? GO:0002181 ... P0CX41 31858614
    551290 6t7i:LW (3.2) BS01 rna ? GO:0002181 ... P24000 31858614
    551291 6t7i:LW (3.2) BS02 rna ? GO:0002181 ... P24000 31858614
    551292 6t7i:LX (3.2) BS01 rna ? GO:0000027 ... P04456 31858614
    551293 6t7i:LX (3.2) BS02 rna ? GO:0000027 ... P04456 31858614
    551294 6t7i:LY (3.2) BS01 rna ? GO:0002181 ... P05743 31858614
    551295 6t7i:LY (3.2) BS02 rna ? GO:0002181 ... P05743 31858614
    551296 6t7i:LZ (3.2) BS01 rna ? GO:0002181 ... P0C2H6 31858614
    551297 6t7i:La (3.2) BS01 rna ? GO:0002181 ... P02406 31858614
    551298 6t7i:Lb (3.2) BS01 rna ? GO:0002181 ... P05747 31858614
    551299 6t7i:Lc (3.2) BS01 rna ? GO:0002181 ... P14120 31858614
    551300 6t7i:Ld (3.2) BS01 rna ? GO:0002181 ... P0C2H8 31858614
    551301 6t7i:Le (3.2) BS01 rna ? GO:0002181 ... P38061 31858614
    551302 6t7i:Lf (3.2) BS01 rna ? GO:0000027 ... P05744 31858614
    551303 6t7i:Lg (3.2) BS01 rna ? GO:0002181 ... P87262 31858614
    551304 6t7i:Lh (3.2) BS01 rna ? GO:0000463 ... P0CX84 31858614
    551305 6t7i:Lh (3.2) BS02 rna ? GO:0000463 ... P0CX84 31858614
    551306 6t7i:Li (3.2) BS01 rna ? GO:0002181 ... P05745 31858614
    551307 6t7i:Lj (3.2) BS01 rna ? GO:0000448 ... P49166 31858614
    551308 6t7i:Lj (3.2) BS02 rna ? GO:0000448 ... P49166 31858614
    551309 6t7i:Lk (3.2) BS01 rna ? GO:0002181 ... P49167 31858614
    551310 6t7i:Ll (3.2) BS01 rna ? GO:0002181 ... P04650 31858614
    551311 6t7i:Ll (3.2) BS02 rna ? GO:0002181 ... P04650 31858614
    551312 6t7i:Lm (3.2) BS01 rna ? GO:0000027 ... P0CH08 31858614
    551313 6t7i:Lo (3.2) BS01 rna ? GO:0002181 ... P0CX27 31858614
    551314 6t7i:Lo (3.2) BS02 rna ? GO:0002181 ... P0CX27 31858614
    551315 6t7i:Lp (3.2) BS01 rna ? GO:0002181 ... P0CX25 31858614
    551316 6t7i:SA (3.2) BS01 rna ? GO:0000028 ... P32905 31858614
    551317 6t7i:SB (3.2) BS01 rna ? GO:0000462 ... P33442 31858614
    551318 6t7i:SC (3.2) BS01 rna ? GO:0000054 ... P25443 31858614
    551319 6t7i:SD (3.2) BS01 rna ? GO:0000054 ... P05750 31858614
    551320 6t7i:SE (3.2) BS01 rna ? GO:0002181 ... P0CX35 31858614
    551321 6t7i:SF (3.2) BS01 rna ? GO:0003723 ... A0A1L4AA68 31858614
    551322 6t7i:SF (3.2) BS02 rna ? GO:0003723 ... A0A1L4AA68 31858614
    551323 6t7i:SF (3.2) BS03 rna ? GO:0003723 ... A0A1L4AA68 31858614
    551324 6t7i:SG (3.2) BS01 rna ? GO:0000462 ... P0CX37 31858614
    551325 6t7i:SH (3.2) BS01 rna ? GO:0002181 ... P26786 31858614
    551326 6t7i:SI (3.2) BS01 rna ? GO:0000462 ... P0CX39 31858614
    551327 6t7i:SI (3.2) BS02 rna ? GO:0000462 ... P0CX39 31858614
    551328 6t7i:SJ (3.2) BS01 rna ? GO:0000462 ... O13516 31858614
    551329 6t7i:SK (3.2) BS01 rna ? GO:0000054 ... Q08745 31858614
    551330 6t7i:SL (3.2) BS01 rna ? GO:0000028 ... P0CX47 31858614
    551331 6t7i:SM (3.2) BS01 rna ? GO:0000028 ... P48589 31858614
    551332 6t7i:SN (3.2) BS01 rna ? GO:0000462 ... P05756 31858614
    551333 6t7i:SN (3.2) BS02 rna ? GO:0000462 ... P05756 31858614
    551334 6t7i:SO (3.2) BS01 rna ? GO:0000028 ... P06367 31858614
    551335 6t7i:SP (3.2) BS01 rna ? GO:0000028 ... Q01855 31858614
    551336 6t7i:SQ (3.2) BS01 rna ? GO:0000462 ... P0CX51 31858614
    551337 6t7i:SR (3.2) BS01 rna ? GO:0000028 ... P14127 31858614
    551338 6t7i:SS (3.2) BS01 rna ? GO:0000054 ... P0CX55 31858614
    551339 6t7i:ST (3.2) BS01 rna ? GO:0000028 ... P07280 31858614
    551340 6t7i:SU (3.2) BS01 rna ? GO:0000462 ... P38701 31858614
    551341 6t7i:SW (3.2) BS01 rna ? GO:0002181 ... P0C0W1 31858614
    551342 6t7i:SX (3.2) BS01 rna ? GO:0000462 ... P0CX29 31858614
    551343 6t7i:SY (3.2) BS01 rna ? GO:0000462 ... P0CX31 31858614
    551344 6t7i:SZ (3.2) BS01 rna ? GO:0002181 ... Q3E792 31858614
    551345 6t7i:SZ (3.2) BS02 rna ? GO:0002181 ... Q3E792 31858614
    551346 6t7i:Sa (3.2) BS01 rna ? GO:0000054 ... P39938 31858614
    551347 6t7i:Sa (3.2) BS02 rna ? GO:0000054 ... P39938 31858614
    551348 6t7i:Sb (3.2) BS01 rna ? GO:0000028 ... P35997 31858614
    551349 6t7i:Sc (3.2) BS01 rna ? GO:0000028 ... P0C0X0 31858614
    551350 6t7i:Sc (3.2) BS02 rna ? GO:0000028 ... P0C0X0 31858614
    551351 6t7i:Sd (3.2) BS01 rna ? GO:0002181 ... P41057 31858614
    551352 6t7i:Se (3.2) BS01 rna ? GO:0002181 ... P0CX33 31858614
    551353 6t7i:Sf (3.2) BS01 rna ? GO:0000028 ... P05759 31858614
    551354 6t7i:Sg (3.2) BS01 rna ? GO:0001965 ... P38011 31858614
    551355 6t7j:A (2.43) BS01 SF4 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551356 6t7j:A (2.43) BS02 FES 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551357 6t7j:A (2.43) BS03 MSK 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551358 6t7j:B (2.43) BS01 SF4 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551359 6t7j:B (2.43) BS02 FES 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551360 6t7j:B (2.43) BS03 MSK 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551361 6t7j:B (2.43) BS04 BU3 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551362 6t7j:B (2.43) BS05 BU3 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551363 6t7j:D (2.43) BS01 SF4 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551364 6t7j:D (2.43) BS02 FES 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551365 6t7j:D (2.43) BS03 MSK 1.2.7.4 GO:0003824 ... B7R5K0 32209322
    551366 6t7k:A (1.79) BS01 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    551367 6t7k:A (1.79) BS02 MU5 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    551368 6t7l:A (1.47) BS01 OP0 3.5.2.6 GO:0008800 ... P00811 33199391
    551369 6t7n:AAAA (1.9) BS01 MN ? GO:0004659 ... Q8WS26 N/A
    551370 6t7n:AAAA (1.9) BS02 MN ? GO:0004659 ... Q8WS26 N/A
    551371 6t7n:AAAA (1.9) BS03 IPE ? GO:0004659 ... Q8WS26 N/A
    551372 6t7n:AAAA (1.9) BS04 IPE ? GO:0004659 ... Q8WS26 N/A
    551373 6t7p:A (1.416) BS01 GSH 3.4.21.34 GO:0004252 ... P03952 32551603
    551374 6t7p:A (1.416) BS02 MU8 3.4.21.34 GO:0004252 ... P03952 32551603 MOAD: Ki=0.97uM
    551375 6t7q:A (1.01) BS01 4G7 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    551376 6t7q:A (1.01) BS02 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    551377 6t7t:LA (3.1) BS01 rna ? GO:0002181 ... P0CX45 31858614
    551378 6t7t:LA (3.1) BS02 rna ? GO:0002181 ... P0CX45 31858614
    551379 6t7t:LB (3.1) BS01 rna ? GO:0000027 ... P14126 31858614
    551380 6t7t:LC (3.1) BS01 rna ? GO:0002181 ... P10664 31858614
    551381 6t7t:LC (3.1) BS02 rna ? GO:0002181 ... P10664 31858614
    551382 6t7t:LD (3.1) BS01 rna ? GO:0000027 ... P26321 31858614
    551383 6t7t:LD (3.1) BS02 rna ? GO:0000027 ... P26321 31858614
    551384 6t7t:LE (3.1) BS01 rna ? GO:0000027 ... P05739 31858614
    551385 6t7t:LF (3.1) BS01 rna ? GO:0000463 ... P05737 31858614
    551386 6t7t:LF (3.1) BS02 rna ? GO:0000463 ... P05737 31858614
    551387 6t7t:LG (3.1) BS01 rna ? GO:0000470 ... P17076 31858614
    551388 6t7t:LG (3.1) BS02 rna ? GO:0000470 ... P17076 31858614
    551389 6t7t:LH (3.1) BS01 rna ? GO:0002181 ... P05738 31858614
    551390 6t7t:LI (3.1) BS01 rna ? GO:0000027 ... P41805 31858614
    551391 6t7t:LI (3.1) BS02 rna ? GO:0000027 ... P41805 31858614
    551392 6t7t:LJ (3.1) BS01 rna ? GO:0000027 ... P0C0W9 31858614
    551393 6t7t:LJ (3.1) BS02 rna ? GO:0000027 ... P0C0W9 31858614
    551394 6t7t:LJ (3.1) BS03 rna ? GO:0000027 ... P0C0W9 31858614
    551395 6t7t:LL (3.1) BS01 rna ? GO:0002181 ... Q12690 31858614
    551396 6t7t:LL (3.1) BS02 rna ? GO:0002181 ... Q12690 31858614
    551397 6t7t:LM (3.1) BS01 rna ? GO:0000027 ... P36105 31858614
    551398 6t7t:LN (3.1) BS01 rna ? GO:0002181 ... P05748 31858614
    551399 6t7t:LN (3.1) BS02 rna ? GO:0002181 ... P05748 31858614
    551400 6t7t:LO (3.1) BS01 rna ? GO:0000470 ... P26784 31858614

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).