SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    551401 6t7t:LP (3.1) BS01 rna ? GO:0000448 ... P05740 31858614
    551402 6t7t:LP (3.1) BS02 rna ? GO:0000448 ... P05740 31858614
    551403 6t7t:LQ (3.1) BS01 rna ? GO:0002181 ... P0CX49 31858614
    551404 6t7t:LR (3.1) BS01 rna ? GO:0002181 ... P0CX82 31858614
    551405 6t7t:LR (3.1) BS02 rna ? GO:0002181 ... P0CX82 31858614
    551406 6t7t:LS (3.1) BS01 rna ? GO:0002181 ... P0CX23 31858614
    551407 6t7t:LS (3.1) BS02 rna ? GO:0002181 ... P0CX23 31858614
    551408 6t7t:LT (3.1) BS01 rna ? GO:0002181 ... Q02753 31858614
    551409 6t7t:LT (3.1) BS02 rna ? GO:0002181 ... Q02753 31858614
    551410 6t7t:LU (3.1) BS01 rna ? GO:0003735 ... P05749 31858614
    551411 6t7t:LV (3.1) BS01 rna ? GO:0002181 ... P0CX41 31858614
    551412 6t7t:LW (3.1) BS01 rna ? GO:0003735 ... P04449 31858614
    551413 6t7t:LW (3.1) BS02 rna ? GO:0003735 ... P04449 31858614
    551414 6t7t:LX (3.1) BS01 rna ? GO:0003735 ... P04456 31858614
    551415 6t7t:LX (3.1) BS02 rna ? GO:0003735 ... P04456 31858614
    551416 6t7t:LY (3.1) BS01 rna ? GO:0002181 ... P05743 31858614
    551417 6t7t:LY (3.1) BS02 rna ? GO:0002181 ... P05743 31858614
    551418 6t7t:LZ (3.1) BS01 rna ? GO:0002181 ... P0C2H6 31858614
    551419 6t7t:La (3.1) BS01 rna ? GO:0002181 ... P02406 31858614
    551420 6t7t:Lb (3.1) BS01 rna ? GO:0002181 ... P05747 31858614
    551421 6t7t:Lc (3.1) BS01 rna ? GO:0002181 ... P14120 31858614
    551422 6t7t:Ld (3.1) BS01 rna ? GO:0002181 ... P0C2H8 31858614
    551423 6t7t:Le (3.1) BS01 rna ? GO:0002181 ... P38061 31858614
    551424 6t7t:Lf (3.1) BS01 rna ? GO:0000027 ... P05744 31858614
    551425 6t7t:Lg (3.1) BS01 rna ? GO:0002181 ... P87262 31858614
    551426 6t7t:Lh (3.1) BS01 rna ? GO:0000463 ... P0CX84 31858614
    551427 6t7t:Lh (3.1) BS02 rna ? GO:0000463 ... P0CX84 31858614
    551428 6t7t:Li (3.1) BS01 rna ? GO:0002181 ... P05745 31858614
    551429 6t7t:Lj (3.1) BS01 rna ? GO:0000448 ... P49166 31858614
    551430 6t7t:Lj (3.1) BS02 rna ? GO:0000448 ... P49166 31858614
    551431 6t7t:Lk (3.1) BS01 rna ? GO:0002181 ... P49167 31858614
    551432 6t7t:Ll (3.1) BS01 rna ? GO:0002181 ... P04650 31858614
    551433 6t7t:Ll (3.1) BS02 rna ? GO:0002181 ... P04650 31858614
    551434 6t7t:Lm (3.1) BS01 rna ? GO:0003735 ... P0CH08 31858614
    551435 6t7t:Lo (3.1) BS01 rna ? GO:0002181 ... P0CX27 31858614
    551436 6t7t:Lo (3.1) BS02 rna ? GO:0002181 ... P0CX27 31858614
    551437 6t7t:Lp (3.1) BS01 rna ? GO:0002181 ... P0CX25 31858614
    551438 6t7t:SA (3.1) BS01 rna ? GO:0003735 ... P32905 31858614
    551439 6t7t:SB (3.1) BS01 rna ? GO:0000462 ... P33442 31858614
    551440 6t7t:SC (3.1) BS01 rna ? GO:0003723 ... P25443 31858614
    551441 6t7t:SD (3.1) BS01 rna ? GO:0000054 ... P05750 31858614
    551442 6t7t:SE (3.1) BS01 rna ? GO:0002181 ... P0CX35 31858614
    551443 6t7t:SF (3.1) BS01 rna ? GO:0000028 ... P26783 31858614
    551444 6t7t:SF (3.1) BS02 rna ? GO:0000028 ... P26783 31858614
    551445 6t7t:SG (3.1) BS01 rna ? GO:0000462 ... P0CX37 31858614
    551446 6t7t:SH (3.1) BS01 rna ? GO:0002181 ... P26786 31858614
    551447 6t7t:SI (3.1) BS01 rna ? GO:0000462 ... P0CX39 31858614
    551448 6t7t:SI (3.1) BS02 rna ? GO:0000462 ... P0CX39 31858614
    551449 6t7t:SJ (3.1) BS01 rna ? GO:0000462 ... O13516 31858614
    551450 6t7t:SK (3.1) BS01 rna ? N/A Q08745 31858614
    551451 6t7t:SL (3.1) BS01 rna ? GO:0000028 ... P0CX47 31858614
    551452 6t7t:SM (3.1) BS01 rna ? GO:0003735 ... P48589 31858614
    551453 6t7t:SN (3.1) BS01 rna ? GO:0000462 ... P05756 31858614
    551454 6t7t:SO (3.1) BS01 rna ? GO:0000028 ... P06367 31858614
    551455 6t7t:SP (3.1) BS01 rna ? GO:0003723 ... Q01855 31858614
    551456 6t7t:SQ (3.1) BS01 rna ? GO:0000462 ... P0CX51 31858614
    551457 6t7t:SR (3.1) BS01 rna ? GO:0000028 ... P02407 31858614
    551458 6t7t:SS (3.1) BS01 rna ? GO:0000054 ... P0CX55 31858614
    551459 6t7t:ST (3.1) BS01 rna ? GO:0000028 ... P07280 31858614
    551460 6t7t:SU (3.1) BS01 rna ? GO:0003723 ... P38701 31858614
    551461 6t7t:SV (3.1) BS01 rna ? GO:0000447 ... P0C0V8 31858614
    551462 6t7t:SW (3.1) BS01 rna ? GO:0002181 ... P0C0W1 31858614
    551463 6t7t:SX (3.1) BS01 rna ? GO:0000462 ... P0CX29 31858614
    551464 6t7t:SY (3.1) BS01 rna ? GO:0000462 ... P0CX31 31858614
    551465 6t7t:SZ (3.1) BS01 rna ? N/A Q3E792 31858614
    551466 6t7t:Sa (3.1) BS01 rna ? GO:0003735 ... P39939 31858614
    551467 6t7t:Sb (3.1) BS01 rna ? GO:0000028 ... P35997 31858614
    551468 6t7t:Sc (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 31858614
    551469 6t7t:Sd (3.1) BS01 rna ? GO:0002181 ... P41057 31858614
    551470 6t7t:Se (3.1) BS01 rna ? GO:0002181 ... P0CX33 31858614
    551471 6t7t:Sf (3.1) BS01 rna ? GO:0003735 ... P05759 31858614
    551472 6t7t:Sg (3.1) BS01 rna ? GO:0001965 ... P38011 31858614
    551473 6t7u:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32505851
    551474 6t7u:A (1.2) BS02 X33 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32505851 MOAD: Ki=0.5nM
    551475 6t7v:A (2.6) BS01 peptide ? N/A Q14145 33065433
    551476 6t7y:A (2.7) BS01 peptide ? GO:0003677 ... Q9UYX8 32221299
    551477 6t7z:A (2.0) BS01 peptide ? N/A Q14145 33065433
    551478 6t80:A (2.99) BS01 peptide ? GO:0000122 ... P31947 N/A
    551479 6t80:B (2.99) BS01 peptide ? GO:0000122 ... P31947 N/A
    551480 6t80:C (2.99) BS01 peptide ? GO:0000122 ... P31947 N/A
    551481 6t80:D (2.99) BS01 peptide ? GO:0000122 ... P31947 N/A
    551482 6t81:A (0.98) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32971003
    551483 6t81:A (0.98) BS02 MUE 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32971003 MOAD: Kd=0.77uM
    551484 6t81:A (0.98) BS03 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32971003 BindingDB: Ki=1500000nM
    551485 6t82:B (1.46) BS01 MUK 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q04544 32743543
    551486 6t83:0 (4.0) BS01 rna ? GO:0002181 ... Q3E792 31858614
    551487 6t83:1 (4.0) BS01 rna ? GO:0000054 ... P39938 31858614
    551488 6t83:2 (4.0) BS01 rna ? GO:0000028 ... P35997 31858614
    551489 6t83:3 (4.0) BS01 rna ? GO:0000028 ... P0C0X0 31858614
    551490 6t83:4 (4.0) BS01 rna ? GO:0002181 ... P41057 31858614
    551491 6t83:5 (4.0) BS01 rna ? GO:0002181 ... P0CX33 31858614
    551492 6t83:6 (4.0) BS01 rna ? GO:0000028 ... P05759 31858614
    551493 6t83:7 (4.0) BS01 rna ? GO:0001965 ... P38011 31858614
    551494 6t83:A (4.0) BS01 rna ? GO:0000448 ... P05740 31858614
    551495 6t83:A (4.0) BS02 rna ? GO:0000448 ... P05740 31858614
    551496 6t83:Ab (4.0) BS01 rna ? GO:0000028 ... P32905 31858614
    551497 6t83:Ay (4.0) BS01 rna ? GO:0002181 ... P0CX45 31858614
    551498 6t83:Ay (4.0) BS02 rna ? GO:0002181 ... P0CX45 31858614
    551499 6t83:B (4.0) BS01 rna ? GO:0002181 ... P0CX49 31858614
    551500 6t83:Ba (4.0) BS01 rna ? GO:0000462 ... P33442 31858614
    551501 6t83:By (4.0) BS01 rna ? GO:0000027 ... P14126 31858614
    551502 6t83:C (4.0) BS01 rna ? GO:0002181 ... P0CX82 31858614
    551503 6t83:C (4.0) BS02 rna ? GO:0002181 ... P0CX82 31858614
    551504 6t83:Cb (4.0) BS01 rna ? GO:0000054 ... P25443 31858614
    551505 6t83:Cy (4.0) BS01 rna ? GO:0002181 ... P10664 31858614
    551506 6t83:Cy (4.0) BS02 rna ? GO:0002181 ... P10664 31858614
    551507 6t83:D (4.0) BS01 rna ? GO:0002181 ... P0CX23 31858614
    551508 6t83:D (4.0) BS02 rna ? GO:0002181 ... P0CX23 31858614
    551509 6t83:Da (4.0) BS01 rna ? GO:0002181 ... P0CX45 31858614
    551510 6t83:Da (4.0) BS02 rna ? GO:0002181 ... P0CX45 31858614
    551511 6t83:Db (4.0) BS01 rna ? GO:0000054 ... P05750 31858614
    551512 6t83:Dy (4.0) BS01 rna ? GO:0000027 ... P26321 31858614
    551513 6t83:Dy (4.0) BS02 rna ? GO:0000027 ... P26321 31858614
    551514 6t83:E (4.0) BS01 rna ? GO:0002181 ... Q02753 31858614
    551515 6t83:E (4.0) BS02 rna ? GO:0002181 ... Q02753 31858614
    551516 6t83:Ea (4.0) BS01 rna ? GO:0000027 ... P14126 31858614
    551517 6t83:Eb (4.0) BS01 rna ? GO:0002181 ... P0CX35 31858614
    551518 6t83:Eb (4.0) BS02 rna ? GO:0002181 ... P0CX35 31858614
    551519 6t83:Ey (4.0) BS01 rna ? GO:0000027 ... Q02326 31858614
    551520 6t83:F (4.0) BS01 rna ? GO:0002181 ... P05749 31858614
    551521 6t83:Fa (4.0) BS01 rna ? GO:0002181 ... P10664 31858614
    551522 6t83:Fa (4.0) BS02 rna ? GO:0002181 ... P10664 31858614
    551523 6t83:Fb (4.0) BS01 rna ? GO:0003723 ... A0A1L4AA68 31858614
    551524 6t83:Fy (4.0) BS01 rna ? GO:0000463 ... P05737 31858614
    551525 6t83:Fy (4.0) BS02 rna ? GO:0000463 ... P05737 31858614
    551526 6t83:G (4.0) BS01 rna ? GO:0002181 ... P0CX41 31858614
    551527 6t83:Ga (4.0) BS01 rna ? GO:0000027 ... P26321 31858614
    551528 6t83:Ga (4.0) BS02 rna ? GO:0000027 ... P26321 31858614
    551529 6t83:Gb (4.0) BS01 rna ? GO:0000462 ... P0CX37 31858614
    551530 6t83:Gy (4.0) BS01 rna ? GO:0000470 ... P17076 31858614
    551531 6t83:Gy (4.0) BS02 rna ? GO:0000470 ... P17076 31858614
    551532 6t83:H (4.0) BS01 rna ? GO:0002181 ... P04449 31858614
    551533 6t83:H (4.0) BS02 rna ? GO:0002181 ... P04449 31858614
    551534 6t83:Ha (4.0) BS01 rna ? GO:0000027 ... Q02326 31858614
    551535 6t83:Hb (4.0) BS01 rna ? GO:0002181 ... P26786 31858614
    551536 6t83:Hy (4.0) BS01 rna ? GO:0002181 ... P05738 31858614
    551537 6t83:I (4.0) BS01 rna ? GO:0000027 ... P04456 31858614
    551538 6t83:I (4.0) BS02 rna ? GO:0000027 ... P04456 31858614
    551539 6t83:Ia (4.0) BS01 rna ? GO:0000463 ... P05737 31858614
    551540 6t83:Ia (4.0) BS02 rna ? GO:0000463 ... P05737 31858614
    551541 6t83:Ib (4.0) BS01 rna ? GO:0000462 ... P0CX39 31858614
    551542 6t83:Ib (4.0) BS02 rna ? GO:0000462 ... P0CX39 31858614
    551543 6t83:Iy (4.0) BS01 rna ? GO:0000027 ... P41805 31858614
    551544 6t83:Iy (4.0) BS02 rna ? GO:0000027 ... P41805 31858614
    551545 6t83:J (4.0) BS01 rna ? GO:0002181 ... P05743 31858614
    551546 6t83:J (4.0) BS02 rna ? GO:0002181 ... P05743 31858614
    551547 6t83:Ja (4.0) BS01 rna ? GO:0000470 ... P17076 31858614
    551548 6t83:Ja (4.0) BS02 rna ? GO:0000470 ... P17076 31858614
    551549 6t83:Jb (4.0) BS01 rna ? GO:0000462 ... O13516 31858614
    551550 6t83:Jy (4.0) BS01 rna ? GO:0000027 ... P0C0W9 31858614
    551551 6t83:Jy (4.0) BS02 rna ? GO:0000027 ... P0C0W9 31858614
    551552 6t83:Jy (4.0) BS03 rna ? GO:0000027 ... P0C0W9 31858614
    551553 6t83:K (4.0) BS01 rna ? GO:0002181 ... P0C2H6 31858614
    551554 6t83:Ka (4.0) BS01 rna ? GO:0002181 ... P05738 31858614
    551555 6t83:Kb (4.0) BS01 rna ? GO:0000054 ... Q08745 31858614
    551556 6t83:L (4.0) BS01 rna ? GO:0002181 ... P02406 31858614
    551557 6t83:La (4.0) BS01 rna ? GO:0000027 ... P41805 31858614
    551558 6t83:La (4.0) BS02 rna ? GO:0000027 ... P41805 31858614
    551559 6t83:Lb (4.0) BS01 rna ? GO:0000028 ... P0CX47 31858614
    551560 6t83:Ly (4.0) BS01 rna ? GO:0002181 ... Q12690 31858614
    551561 6t83:Ly (4.0) BS02 rna ? GO:0002181 ... Q12690 31858614
    551562 6t83:M (4.0) BS01 rna ? GO:0002181 ... P05747 31858614
    551563 6t83:Ma (4.0) BS01 rna ? GO:0000027 ... P0C0W9 31858614
    551564 6t83:Ma (4.0) BS02 rna ? GO:0000027 ... P0C0W9 31858614
    551565 6t83:Ma (4.0) BS03 rna ? GO:0000027 ... P0C0W9 31858614
    551566 6t83:Mb (4.0) BS01 rna ? GO:0000028 ... P48589 31858614
    551567 6t83:My (4.0) BS01 rna ? GO:0000027 ... P36105 31858614
    551568 6t83:N (4.0) BS01 rna ? GO:0002181 ... P14120 31858614
    551569 6t83:Na (4.0) BS01 rna ? GO:0002181 ... Q12690 31858614
    551570 6t83:Na (4.0) BS02 rna ? GO:0002181 ... Q12690 31858614
    551571 6t83:Nb (4.0) BS01 rna ? GO:0000462 ... P05756 31858614
    551572 6t83:Nb (4.0) BS02 rna ? GO:0000462 ... P05756 31858614
    551573 6t83:Ny (4.0) BS01 rna ? GO:0002181 ... P05748 31858614
    551574 6t83:Ny (4.0) BS02 rna ? GO:0002181 ... P05748 31858614
    551575 6t83:O (4.0) BS01 rna ? GO:0002181 ... P0C2H8 31858614
    551576 6t83:Oa (4.0) BS01 rna ? GO:0000027 ... P36105 31858614
    551577 6t83:Ob (4.0) BS01 rna ? GO:0000028 ... P06367 31858614
    551578 6t83:Oy (4.0) BS01 rna ? GO:0000470 ... P26784 31858614
    551579 6t83:P (4.0) BS01 rna ? GO:0002181 ... P38061 31858614
    551580 6t83:Pa (4.0) BS01 rna ? GO:0002181 ... P05748 31858614
    551581 6t83:Pa (4.0) BS02 rna ? GO:0002181 ... P05748 31858614
    551582 6t83:Pb (4.0) BS01 rna ? GO:0000028 ... Q01855 31858614
    551583 6t83:Py (4.0) BS01 rna ? GO:0000448 ... P05740 31858614
    551584 6t83:Py (4.0) BS02 rna ? GO:0000448 ... P05740 31858614
    551585 6t83:Q (4.0) BS01 rna ? GO:0000027 ... P05744 31858614
    551586 6t83:Qa (4.0) BS01 rna ? GO:0000470 ... P26784 31858614
    551587 6t83:Qb (4.0) BS01 rna ? GO:0000462 ... P0CX51 31858614
    551588 6t83:Qy (4.0) BS01 rna ? GO:0002181 ... P0CX49 31858614
    551589 6t83:R (4.0) BS01 rna ? GO:0002181 ... P87262 31858614
    551590 6t83:Rb (4.0) BS01 rna ? GO:0000028 ... P14127 31858614
    551591 6t83:Ry (4.0) BS01 rna ? GO:0002181 ... P0CX82 31858614
    551592 6t83:Ry (4.0) BS02 rna ? GO:0002181 ... P0CX82 31858614
    551593 6t83:S (4.0) BS01 rna ? GO:0000463 ... P0CX84 31858614
    551594 6t83:S (4.0) BS02 rna ? GO:0000463 ... P0CX84 31858614
    551595 6t83:Sb (4.0) BS01 rna ? GO:0000054 ... P0CX55 31858614
    551596 6t83:Sy (4.0) BS01 rna ? GO:0002181 ... P0CX23 31858614
    551597 6t83:Sy (4.0) BS02 rna ? GO:0002181 ... P0CX23 31858614
    551598 6t83:T (4.0) BS01 rna ? GO:0002181 ... P05745 31858614
    551599 6t83:Tb (4.0) BS01 rna ? GO:0000028 ... P07280 31858614
    551600 6t83:Ty (4.0) BS01 rna ? GO:0002181 ... Q02753 31858614

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).