SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    552201 6tb3:S (2.8) BS02 MG ? GO:0002181 ... P0CX35 32299921
    552202 6tb3:T (2.8) BS01 rna ? GO:0000462 ... P0CX37 32299921
    552203 6tb3:U (2.8) BS01 rna ? GO:0002181 ... P26786 32299921
    552204 6tb3:V (2.8) BS01 rna ? GO:0003735 ... A0A0J9X221 32299921
    552205 6tb3:V (2.8) BS02 rna ? GO:0003735 ... A0A0J9X221 32299921
    552206 6tb3:W (2.8) BS01 rna ? GO:0000462 ... O13516 32299921
    552207 6tb3:X (2.8) BS01 rna ? GO:0000028 ... P0CX47 32299921
    552208 6tb3:Y (2.8) BS01 rna ? GO:0000462 ... P05756 32299921
    552209 6tb3:Y (2.8) BS02 rna ? GO:0000462 ... P05756 32299921
    552210 6tb3:Z (2.8) BS01 rna ? GO:0000028 ... P39516 32299921
    552211 6tb3:b (2.8) BS01 rna ? GO:0002181 ... P0C0W1 32299921
    552212 6tb3:c (2.8) BS01 rna ? GO:0000462 ... P0CX29 32299921
    552213 6tb3:d (2.8) BS01 rna ? GO:0000462 ... P0CX31 32299921
    552214 6tb3:e (2.8) BS01 rna ? GO:0003735 ... P39939 32299921
    552215 6tb3:f (2.8) BS01 rna ? GO:0000028 ... P35997 32299921
    552216 6tb3:g (2.8) BS01 rna ? GO:0002181 ... P0CX33 32299921
    552217 6tb5:A (1.83) BS01 CA 1.16.-.- GO:0008199 ... Q9RZN1 N/A
    552218 6tb5:A (1.83) BS02 CA 1.16.-.- GO:0008199 ... Q9RZN1 N/A
    552219 6tb6:B (1.98) BS01 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    552220 6tb6:B (1.98) BS02 NAP 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    552221 6tb8:A (1.8) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31942590
    552222 6tb8:B (1.8) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31942590
    552223 6tb9:B2 (3.56) BS01 peptide N/A N/A N/A 32541663
    552224 6tb9:B3 (3.56) BS01 peptide N/A N/A N/A 32541663
    552225 6tb9:C2 (3.56) BS01 peptide N/A N/A N/A 32541663
    552226 6tb9:C3 (3.56) BS01 peptide N/A N/A N/A 32541663
    552227 6tb9:D2 (3.56) BS01 peptide N/A N/A N/A 32541663
    552228 6tb9:D3 (3.56) BS01 peptide N/A N/A N/A 32541663
    552229 6tb9:E2 (3.56) BS01 peptide N/A N/A N/A 32541663
    552230 6tb9:E3 (3.56) BS01 peptide N/A N/A N/A 32541663
    552231 6tba:7A (4.54) BS01 SF4 ? N/A D5AU02 32541663
    552232 6tba:7B (4.54) BS01 SF4 ? N/A D5AU02 32541663
    552233 6tba:7C (4.54) BS01 SF4 ? N/A D5AU02 32541663
    552234 6tba:B2 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552235 6tba:B3 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552236 6tba:B7 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552237 6tba:B8 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552238 6tba:BC (4.54) BS01 peptide ? N/A D5AR33 32541663
    552239 6tba:BD (4.54) BS01 peptide ? N/A D5AR33 32541663
    552240 6tba:BH (4.54) BS01 peptide ? N/A D5AR33 32541663
    552241 6tba:BI (4.54) BS01 peptide ? N/A D5AR33 32541663
    552242 6tba:BM (4.54) BS01 peptide ? N/A D5AR33 32541663
    552243 6tba:BN (4.54) BS01 peptide ? N/A D5AR33 32541663
    552244 6tba:C2 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552245 6tba:C3 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552246 6tba:C7 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552247 6tba:C8 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552248 6tba:CC (4.54) BS01 peptide ? N/A D5AR33 32541663
    552249 6tba:CD (4.54) BS01 peptide ? N/A D5AR33 32541663
    552250 6tba:CH (4.54) BS01 peptide ? N/A D5AR33 32541663
    552251 6tba:CI (4.54) BS01 peptide ? N/A D5AR33 32541663
    552252 6tba:CM (4.54) BS01 peptide ? N/A D5AR33 32541663
    552253 6tba:CN (4.54) BS01 peptide ? N/A D5AR33 32541663
    552254 6tba:D2 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552255 6tba:D3 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552256 6tba:D7 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552257 6tba:D8 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552258 6tba:DC (4.54) BS01 peptide ? N/A D5AR33 32541663
    552259 6tba:DD (4.54) BS01 peptide ? N/A D5AR33 32541663
    552260 6tba:DH (4.54) BS01 peptide ? N/A D5AR33 32541663
    552261 6tba:DI (4.54) BS01 peptide ? N/A D5AR33 32541663
    552262 6tba:DM (4.54) BS01 peptide ? N/A D5AR33 32541663
    552263 6tba:DN (4.54) BS01 peptide ? N/A D5AR33 32541663
    552264 6tba:E2 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552265 6tba:E3 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552266 6tba:E7 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552267 6tba:E8 (4.54) BS01 peptide ? N/A D5AR33 32541663
    552268 6tba:EC (4.54) BS01 peptide ? N/A D5AR33 32541663
    552269 6tba:ED (4.54) BS01 peptide ? N/A D5AR33 32541663
    552270 6tba:EH (4.54) BS01 peptide ? N/A D5AR33 32541663
    552271 6tba:EI (4.54) BS01 peptide ? N/A D5AR33 32541663
    552272 6tba:EM (4.54) BS01 peptide ? N/A D5AR33 32541663
    552273 6tba:EN (4.54) BS01 peptide ? N/A D5AR33 32541663
    552274 6tbb:A (2.45) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552275 6tbb:A (2.45) BS02 KAL 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552276 6tbb:B (2.45) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552277 6tbb:B (2.45) BS02 KAL 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552278 6tbb:C (2.45) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552279 6tbb:C (2.45) BS02 KAL 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552280 6tbb:D (2.45) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552281 6tbb:D (2.45) BS02 KAL 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552282 6tbb:E (2.45) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552283 6tbb:E (2.45) BS02 KAL 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552284 6tbb:F (2.45) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552285 6tbb:F (2.45) BS02 KAL 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552286 6tbb:G (2.45) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552287 6tbb:G (2.45) BS02 KAL 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552288 6tbb:H (2.45) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552289 6tbb:H (2.45) BS02 KAL 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552290 6tbc:A (2.55) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552291 6tbc:A (2.55) BS02 N5H 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552292 6tbc:B (2.55) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552293 6tbc:B (2.55) BS02 N5H 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552294 6tbc:C (2.55) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552295 6tbc:C (2.55) BS02 N5H 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552296 6tbc:D (2.55) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552297 6tbc:D (2.55) BS02 N5H 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552298 6tbc:E (2.55) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552299 6tbc:E (2.55) BS02 N5H 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552300 6tbc:F (2.55) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552301 6tbc:F (2.55) BS02 N5H 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552302 6tbc:G (2.55) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552303 6tbc:G (2.55) BS02 N5H 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552304 6tbc:H (2.55) BS01 NDP 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552305 6tbc:H (2.55) BS02 N5H 1.3.1.39 GO:0000166 ... Q6GI75 32208550
    552306 6tbe:A (1.67008) BS01 NOV ? GO:0000045 ... Q9H492 33769048
    552307 6tbf:A (1.5) BS01 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552308 6tbf:A (1.5) BS02 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552309 6tbf:B (1.5) BS01 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552310 6tbf:C (1.5) BS01 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552311 6tbf:D (1.5) BS01 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552312 6tbf:E (1.5) BS01 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552313 6tbf:F (1.5) BS01 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552314 6tbf:G (1.5) BS01 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552315 6tbf:H (1.5) BS01 N0T 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552316 6tbg:A (1.5) BS01 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552317 6tbg:A (1.5) BS02 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552318 6tbg:B (1.5) BS01 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552319 6tbg:C (1.5) BS01 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552320 6tbg:D (1.5) BS01 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552321 6tbg:E (1.5) BS01 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552322 6tbg:F (1.5) BS01 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552323 6tbg:F (1.5) BS02 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552324 6tbg:G (1.5) BS01 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552325 6tbg:H (1.5) BS01 N0N 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552326 6tbh:A (1.5) BS01 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552327 6tbh:A (1.5) BS02 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552328 6tbh:B (1.5) BS01 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552329 6tbh:B (1.5) BS02 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552330 6tbh:C (1.5) BS01 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552331 6tbh:C (1.5) BS02 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552332 6tbh:D (1.5) BS01 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552333 6tbh:E (1.5) BS01 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552334 6tbh:E (1.5) BS02 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552335 6tbh:F (1.5) BS01 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552336 6tbh:F (1.5) BS02 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552337 6tbh:G (1.5) BS01 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552338 6tbh:G (1.5) BS02 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552339 6tbh:H (1.5) BS01 N0K 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552340 6tbi:A (1.46) BS01 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552341 6tbi:B (1.46) BS01 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552342 6tbi:C (1.46) BS01 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552343 6tbi:D (1.46) BS01 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552344 6tbi:E (1.46) BS01 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552345 6tbi:E (1.46) BS02 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552346 6tbi:F (1.46) BS01 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552347 6tbi:G (1.46) BS01 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552348 6tbi:H (1.46) BS01 N8V 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552349 6tbj:A (1.5) BS01 N0W 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552350 6tbj:B (1.5) BS01 N0W 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552351 6tbj:C (1.5) BS01 N0W 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552352 6tbj:D (1.5) BS01 N0W 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552353 6tbj:E (1.5) BS01 N0W 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552354 6tbj:F (1.5) BS01 N0W 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552355 6tbj:G (1.5) BS01 N0W 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552356 6tbj:H (1.5) BS01 N0W 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552357 6tbk:A (1.6) BS01 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552358 6tbk:A (1.6) BS02 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552359 6tbk:B (1.6) BS01 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552360 6tbk:C (1.6) BS01 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552361 6tbk:D (1.6) BS01 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552362 6tbk:E (1.6) BS01 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552363 6tbk:F (1.6) BS01 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552364 6tbk:G (1.6) BS01 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552365 6tbk:H (1.6) BS01 N0Q 3.2.1.23 GO:0004565 ... B3PBE0 32899288
    552366 6tbo:A (2.07) BS01 N0E 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q04544 32743543
    552367 6tbo:B (2.07) BS01 N0E 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q04544 32743543
    552368 6tbp:A (1.56) BS01 N0H 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q04544 32743543
    552369 6tbq:A (1.72) BS01 CU ? N/A Q2U8Y3 N/A
    552370 6tbq:A (1.72) BS02 ZN ? N/A Q2U8Y3 N/A
    552371 6tbq:A (1.72) BS03 ZN ? N/A Q2U8Y3 N/A
    552372 6tbr:A (1.7) BS01 ZN ? N/A Q2U8Y3 N/A
    552373 6tbr:A (1.7) BS02 ZN ? N/A Q2U8Y3 N/A
    552374 6tbr:A (1.7) BS03 ZN ? N/A Q2U8Y3 N/A
    552375 6tbr:A (1.7) BS04 ZN ? N/A Q2U8Y3 N/A
    552376 6tbr:A (1.7) BS05 ZN ? N/A Q2U8Y3 N/A
    552377 6tbr:B (1.7) BS01 ZN ? N/A Q2U8Y3 N/A
    552378 6tbr:B (1.7) BS02 ZN ? N/A Q2U8Y3 N/A
    552379 6tbr:B (1.7) BS03 ZN ? N/A Q2U8Y3 N/A
    552380 6tbr:B (1.7) BS04 ZN ? N/A Q2U8Y3 N/A
    552381 6tbr:B (1.7) BS05 ZN ? N/A Q2U8Y3 N/A
    552382 6tbt:A (1.63) BS01 peptide ? N/A P41182 34774129
    552383 6tbt:A (1.63) BS02 peptide ? N/A P41182 34774129
    552384 6tbt:B (1.63) BS01 peptide ? N/A P41182 34774129
    552385 6tbt:B (1.63) BS02 peptide ? N/A P41182 34774129
    552386 6tbu:A (3.16) BS01 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    552387 6tbu:A (3.16) BS02 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    552388 6tbu:A (3.16) BS03 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    552389 6tbu:A (3.16) BS04 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    552390 6tbu:A (3.16) BS05 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    552391 6tbu:A (3.16) BS06 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    552392 6tbu:A (3.16) BS07 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    552393 6tbu:A (3.16) BS08 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    552394 6tbv:L021 (2.7) BS01 rna ? GO:0000027 ... P60422 32094585
    552395 6tbv:L031 (2.7) BS01 rna ? GO:0000027 ... P60438 32094585
    552396 6tbv:L031 (2.7) BS02 MG ? GO:0000027 ... P60438 32094585
    552397 6tbv:L041 (2.7) BS01 rna ? GO:0001070 ... P60723 32094585
    552398 6tbv:L051 (2.7) BS01 rna ? GO:0000027 ... P62399 32094585
    552399 6tbv:L051 (2.7) BS02 rna ? GO:0000027 ... P62399 32094585
    552400 6tbv:L051 (2.7) BS03 rna ? GO:0000027 ... P62399 32094585

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).