SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    557801 6u42:T5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557802 6u42:T6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557803 6u42:T7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557804 6u42:T8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557805 6u42:U1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557806 6u42:U2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557807 6u42:U3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557808 6u42:U4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557809 6u42:U5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557810 6u42:U6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557811 6u42:U7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557812 6u42:U8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557813 6u42:U9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557814 6u42:V0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557815 6u42:V1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557816 6u42:V2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557817 6u42:V3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557818 6u42:V4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557819 6u42:V6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557820 6u42:V7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557821 6u42:V8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557822 6u42:V9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557823 6u42:W0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557824 6u42:W1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557825 6u42:W2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557826 6u42:W3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557827 6u42:W4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557828 6u42:W5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557829 6u42:W6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557830 6u42:W7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557831 6u42:W8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557832 6u42:W9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557833 6u42:X0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557834 6u42:X2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557835 6u42:X3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557836 6u42:X4 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    557837 6u42:X4 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    557838 6u42:X5 (3.4) BS01 MG 3.6.5.- GO:0005200 ... P09204 31668805
    557839 6u42:X5 (3.4) BS02 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557840 6u42:X6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557841 6u42:X7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557842 6u42:X8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557843 6u42:X9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557844 6u42:Y0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557845 6u42:Y1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557846 6u42:Y2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557847 6u42:Y3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557848 6u42:Y4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557849 6u42:Y5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557850 6u42:Y6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557851 6u42:Y8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557852 6u42:Y9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557853 6u42:Z0 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    557854 6u42:Z0 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    557855 6u42:Z1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557856 6u42:Z2 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    557857 6u42:Z2 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    557858 6u42:Z3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557859 6u42:Z4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    557860 6u42:Z5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557861 6u42:Z6 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    557862 6u42:Z6 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    557863 6u42:Z7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557864 6u42:Z8 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    557865 6u42:Z8 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    557866 6u42:Z9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    557867 6u43:A (1.4) BS01 MG ? GO:0003746 ... A0A062V290 N/A
    557868 6u44:A (2.1) BS01 MG ? GO:0003746 ... A0A062V290 N/A
    557869 6u44:B (2.1) BS01 MG ? GO:0003746 ... A0A062V290 N/A
    557870 6u45:A (2.35) BS01 MG ? GO:0003746 ... A0A062V290 N/A
    557871 6u45:B (2.35) BS01 MG ? GO:0003746 ... A0A062V290 N/A
    557872 6u48:C0 (2.87) BS01 rna ? GO:0000027 ... P0AG51 31594941
    557873 6u48:C0 (2.87) BS02 rna ? GO:0000027 ... P0AG51 31594941
    557874 6u48:C1 (2.87) BS01 rna ? GO:0000027 ... P0A7N4 31594941
    557875 6u48:C2 (2.87) BS01 rna ? GO:0000027 ... P0A7N9 31594941
    557876 6u48:C3 (2.87) BS01 rna ? GO:0002181 ... P0A7P5 31594941
    557877 6u48:C4 (2.87) BS01 rna ? GO:0002181 ... P0A7Q1 31594941
    557878 6u48:C5 (2.87) BS01 rna ? GO:0002181 ... P0A7Q6 31594941
    557879 6u48:CC (2.87) BS01 rna ? GO:0000027 ... P60422 31594941
    557880 6u48:CD (2.87) BS01 rna ? GO:0000027 ... P60438 31594941
    557881 6u48:CE (2.87) BS01 rna ? GO:0001070 ... P60723 31594941
    557882 6u48:CE (2.87) BS02 peptide ? GO:0001070 ... P60723 31594941
    557883 6u48:CF (2.87) BS01 rna ? GO:0000027 ... P62399 31594941
    557884 6u48:CF (2.87) BS02 rna ? GO:0000027 ... P62399 31594941
    557885 6u48:CG (2.87) BS01 rna ? GO:0000027 ... P0AG55 31594941
    557886 6u48:CH (2.87) BS01 rna ? GO:0002181 ... P0A7R1 31594941
    557887 6u48:CJ (2.87) BS01 rna ? GO:0000027 ... P0A7J7 31594941
    557888 6u48:CK (2.87) BS01 rna ? GO:0002181 ... P0AA10 31594941
    557889 6u48:CL (2.87) BS01 rna ? GO:0002181 ... P0ADY3 31594941
    557890 6u48:CM (2.87) BS01 rna ? GO:0002181 ... P02413 31594941
    557891 6u48:CN (2.87) BS01 rna ? GO:0000027 ... P0ADY7 31594941
    557892 6u48:CN (2.87) BS02 rna ? GO:0000027 ... P0ADY7 31594941
    557893 6u48:CO (2.87) BS01 rna ? GO:0000027 ... P0AG44 31594941
    557894 6u48:CP (2.87) BS01 rna ? GO:0002181 ... P0C018 31594941
    557895 6u48:CP (2.87) BS02 rna ? GO:0002181 ... P0C018 31594941
    557896 6u48:CQ (2.87) BS01 rna ? GO:0000027 ... P0A7K6 31594941
    557897 6u48:CR (2.87) BS01 rna ? GO:0000027 ... P0A7L3 31594941
    557898 6u48:CS (2.87) BS01 rna ? GO:0002181 ... P0AG48 31594941
    557899 6u48:CT (2.87) BS01 rna ? GO:0002181 ... P61175 31594941
    557900 6u48:CU (2.87) BS01 rna ? GO:0000027 ... P0ADZ0 31594941
    557901 6u48:CV (2.87) BS01 rna ? GO:0000027 ... P60624 31594941
    557902 6u48:CW (2.87) BS01 rna ? GO:0000027 ... P68919 31594941
    557903 6u48:CW (2.87) BS02 rna ? GO:0000027 ... P68919 31594941
    557904 6u48:CX (2.87) BS01 rna ? GO:0003735 ... P0A7L8 31594941
    557905 6u48:CX (2.87) BS02 rna ? GO:0003735 ... P0A7L8 31594941
    557906 6u48:CY (2.87) BS01 rna ? GO:0000027 ... P0A7M2 31594941
    557907 6u48:CZ (2.87) BS01 rna ? GO:0000027 ... P0A7M6 31594941
    557908 6u49:A (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557909 6u49:A (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557910 6u49:A (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    557911 6u49:B (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557912 6u49:B (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557913 6u49:B (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    557914 6u49:C (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557915 6u49:C (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557916 6u49:C (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    557917 6u49:C (2.35) BS04 PQJ ? GO:0001897 ... P09616 32179646
    557918 6u49:D (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557919 6u49:D (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557920 6u49:D (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    557921 6u49:D (2.35) BS04 PQJ ? GO:0001897 ... P09616 32179646
    557922 6u49:E (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557923 6u49:E (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557924 6u49:E (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    557925 6u49:E (2.35) BS04 PQJ ? GO:0001897 ... P09616 32179646
    557926 6u49:F (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557927 6u49:F (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557928 6u49:F (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    557929 6u49:F (2.35) BS04 PQJ ? GO:0001897 ... P09616 32179646
    557930 6u49:G (2.35) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557931 6u49:G (2.35) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557932 6u49:G (2.35) BS03 PQJ ? GO:0001897 ... P09616 32179646
    557933 6u4a:A (1.88) BS01 peptide ? N/A Q15059 33046654
    557934 6u4a:B (1.88) BS01 peptide ? N/A Q15059 33046654
    557935 6u4b:A (2.1) BS01 MG ? GO:0016757 ... Q48484 32152541
    557936 6u4i:A (1.55) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 33376217
    557937 6u4i:B (1.55) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 33376217
    557938 6u4j:A (2.11) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 31971798
    557939 6u4j:A (2.11) BS02 PWV 1.1.1.42 GO:0000287 ... O75874 31971798 MOAD: ic50=0.0212uM
    BindingDB: IC50=21nM
    557940 6u4j:B (2.11) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 31971798
    557941 6u4j:B (2.11) BS02 PWV 1.1.1.42 GO:0000287 ... O75874 31971798 MOAD: ic50=0.0212uM
    BindingDB: IC50=21nM
    557942 6u4l:A (1.911) BS01 FE 1.13.11.20 GO:0005506 ... P21816 32368901
    557943 6u4m:A (-1.00) BS01 ZN ? N/A P49023 31590942
    557944 6u4m:A (-1.00) BS02 ZN ? N/A P49023 31590942
    557945 6u4n:B (-1.00) BS01 ZN ? N/A P49023 31590942
    557946 6u4n:B (-1.00) BS02 ZN ? N/A P49023 31590942
    557947 6u4p:A (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557948 6u4p:A (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557949 6u4p:B (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557950 6u4p:B (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557951 6u4p:C (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557952 6u4p:C (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557953 6u4p:D (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557954 6u4p:D (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557955 6u4p:E (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557956 6u4p:E (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557957 6u4p:F (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557958 6u4p:F (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557959 6u4p:G (2.49) BS01 PQJ ? GO:0001897 ... P09616 32179646
    557960 6u4p:G (2.49) BS02 PQJ ? GO:0001897 ... P09616 32179646
    557961 6u4q:A (1.306) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    557962 6u4q:A (1.306) BS02 PX7 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211 MOAD: Ki=150.3nM
    BindingDB: Ki=853nM
    557963 6u4r:A (2.45) BS01 9KL ? GO:0003677 ... P35747 32469516
    557964 6u4r:A (2.45) BS02 9KL ? GO:0003677 ... P35747 32469516
    557965 6u4r:A (2.45) BS03 9KL ? GO:0003677 ... P35747 32469516
    557966 6u4r:A (2.45) BS04 KNA ? GO:0003677 ... P35747 32469516
    557967 6u4s:A (2.49) BS01 FE 1.13.11.20 GO:0005506 ... P21816 32368901
    557968 6u4t:A (1.356) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    557969 6u4t:A (1.356) BS02 PX7 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211 MOAD: Ki=78.7nM
    BindingDB: Ki=853nM
    557970 6u4t:A (1.356) BS03 PX7 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211 MOAD: Ki=78.7nM
    BindingDB: Ki=853nM
    557971 6u4v:A (2.3) BS01 FE 1.13.11.20 GO:0005506 ... P21816 32368901
    557972 6u4x:A (2.25) BS01 IBP ? GO:0003677 ... P35747 32469516
    557973 6u4x:A (2.25) BS02 IBP ? GO:0003677 ... P35747 32469516
    557974 6u5a:A (2.65) BS01 PWY ? GO:0003677 ... P35747 32469516
    557975 6u5a:A (2.65) BS02 PWY ? GO:0003677 ... P35747 32469516
    557976 6u5a:A (2.65) BS03 PWY ? GO:0003677 ... P35747 32469516
    557977 6u5l:A (1.75) BS01 3RJ 2.7.11.1 GO:0004672 ... Q96C45 31841327
    557978 6u5m:A (1.8) BS01 Q0S ? GO:0000122 ... P61964 31724864 MOAD: Kd=0.511uM
    BindingDB: Kd=511nM
    557979 6u5m:B (1.8) BS01 Q0S ? GO:0000122 ... P61964 31724864 MOAD: Kd=0.511uM
    BindingDB: Kd=511nM
    557980 6u5n:A (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    557981 6u5n:A (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    557982 6u5n:A (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    557983 6u5n:B (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    557984 6u5n:B (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    557985 6u5n:B (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    557986 6u5n:C (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    557987 6u5n:C (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    557988 6u5n:C (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    557989 6u5n:D (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    557990 6u5n:D (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    557991 6u5n:D (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    557992 6u5n:E (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    557993 6u5n:E (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    557994 6u5n:E (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    557995 6u5n:F (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    557996 6u5n:F (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    557997 6u5n:F (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    557998 6u5n:G (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    557999 6u5n:G (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    558000 6u5n:G (3.2) BS03 CA ? GO:0005886 ... O27564 32269335

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).