SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    560401 6uo1:1g (2.95) BS02 rna ? GO:0000049 ... P17291 31672910
    560402 6uo1:1h (2.95) BS01 rna ? GO:0003735 ... P0DOY9 31672910
    560403 6uo1:1i (2.95) BS01 rna ? GO:0000049 ... P80374 31672910
    560404 6uo1:1i (2.95) BS02 rna ? GO:0000049 ... P80374 31672910
    560405 6uo1:1j (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 31672910
    560406 6uo1:1k (2.95) BS01 rna ? GO:0003735 ... P80376 31672910
    560407 6uo1:1k (2.95) BS02 MG ? GO:0003735 ... P80376 31672910
    560408 6uo1:1l (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 31672910
    560409 6uo1:1l (2.95) BS02 rna ? GO:0000049 ... Q5SHN3 31672910
    560410 6uo1:1l (2.95) BS03 MG ? GO:0000049 ... Q5SHN3 31672910
    560411 6uo1:1m (2.95) BS01 rna ? GO:0000049 ... P80377 31672910
    560412 6uo1:1m (2.95) BS02 rna ? GO:0000049 ... P80377 31672910
    560413 6uo1:1m (2.95) BS03 rna ? GO:0000049 ... P80377 31672910
    560414 6uo1:1m (2.95) BS04 MG ? GO:0000049 ... P80377 31672910
    560415 6uo1:1m (2.95) BS05 MG ? GO:0000049 ... P80377 31672910
    560416 6uo1:1n (2.95) BS01 rna ? GO:0003735 ... P0DOY6 31672910
    560417 6uo1:1n (2.95) BS02 ZN ? GO:0003735 ... P0DOY6 31672910
    560418 6uo1:1o (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 31672910
    560419 6uo1:1o (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 31672910
    560420 6uo1:1p (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 31672910
    560421 6uo1:1q (2.95) BS01 rna ? GO:0003735 ... P0DOY7 31672910
    560422 6uo1:1r (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 31672910
    560423 6uo1:1s (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 31672910
    560424 6uo1:1t (2.95) BS01 rna ? GO:0003723 ... P80380 31672910
    560425 6uo1:1t (2.95) BS02 MG ? GO:0003723 ... P80380 31672910
    560426 6uo1:20 (2.95) BS01 rna ? GO:0003735 ... P60493 31672910
    560427 6uo1:20 (2.95) BS02 rna ? GO:0003735 ... P60493 31672910
    560428 6uo1:20 (2.95) BS03 rna ? GO:0003735 ... P60493 31672910
    560429 6uo1:21 (2.95) BS01 rna ? GO:0003735 ... P60494 31672910
    560430 6uo1:22 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 31672910
    560431 6uo1:23 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 31672910
    560432 6uo1:23 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 31672910
    560433 6uo1:24 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 31672910
    560434 6uo1:24 (2.95) BS02 ZN ? GO:0003735 ... Q5SJE1 31672910
    560435 6uo1:25 (2.95) BS01 rna ? GO:0003735 ... P80339 31672910
    560436 6uo1:25 (2.95) BS02 ZN ? GO:0003735 ... P80339 31672910
    560437 6uo1:26 (2.95) BS01 rna ? GO:0000049 ... P35871 31672910
    560438 6uo1:26 (2.95) BS02 ZN ? GO:0000049 ... P35871 31672910
    560439 6uo1:27 (2.95) BS01 rna ? GO:0003735 ... P80340 31672910
    560440 6uo1:28 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 31672910
    560441 6uo1:29 (2.95) BS01 rna ? GO:0003735 ... Q5SHR2 31672910
    560442 6uo1:29 (2.95) BS02 ZN ? GO:0003735 ... Q5SHR2 31672910
    560443 6uo1:2D (2.95) BS01 rna ? GO:0002181 ... P60405 31672910
    560444 6uo1:2D (2.95) BS02 rna ? GO:0002181 ... P60405 31672910
    560445 6uo1:2E (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 31672910
    560446 6uo1:2E (2.95) BS02 MG ? GO:0003735 ... Q5SHN8 31672910
    560447 6uo1:2E (2.95) BS03 MG ? GO:0003735 ... Q5SHN8 31672910
    560448 6uo1:2F (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 31672910
    560449 6uo1:2F (2.95) BS02 MG ? GO:0003735 ... Q5SHN9 31672910
    560450 6uo1:2F (2.95) BS03 MG ? GO:0003735 ... Q5SHN9 31672910
    560451 6uo1:2G (2.95) BS01 rna ? GO:0000049 ... Q5SHQ0 31672910
    560452 6uo1:2G (2.95) BS02 rna ? GO:0000049 ... Q5SHQ0 31672910
    560453 6uo1:2G (2.95) BS03 rna ? GO:0000049 ... Q5SHQ0 31672910
    560454 6uo1:2H (2.95) BS01 rna ? GO:0002181 ... P0DOY8 31672910
    560455 6uo1:2I (2.95) BS01 rna ? GO:0003735 ... Q5SLQ1 31672910
    560456 6uo1:2N (2.95) BS01 rna ? GO:0003729 ... P60488 31672910
    560457 6uo1:2O (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 31672910
    560458 6uo1:2O (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 31672910
    560459 6uo1:2P (2.95) BS01 rna ? GO:0003735 ... Q5SHQ7 31672910
    560460 6uo1:2Q (2.95) BS01 rna ? GO:0000049 ... P60489 31672910
    560461 6uo1:2Q (2.95) BS02 rna ? GO:0000049 ... P60489 31672910
    560462 6uo1:2R (2.95) BS01 rna ? GO:0003735 ... Q9Z9H5 31672910
    560463 6uo1:2S (2.95) BS01 rna ? GO:0003735 ... Q5SHQ4 31672910
    560464 6uo1:2S (2.95) BS02 rna ? GO:0003735 ... Q5SHQ4 31672910
    560465 6uo1:2T (2.95) BS01 rna ? GO:0003735 ... P60490 31672910
    560466 6uo1:2T (2.95) BS02 rna ? GO:0003735 ... P60490 31672910
    560467 6uo1:2U (2.95) BS01 rna ? GO:0000027 ... P60491 31672910
    560468 6uo1:2V (2.95) BS01 rna ? GO:0003723 ... P60492 31672910
    560469 6uo1:2W (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 31672910
    560470 6uo1:2X (2.95) BS01 rna ? GO:0003735 ... Q5SHP0 31672910
    560471 6uo1:2Y (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 31672910
    560472 6uo1:2Y (2.95) BS02 ZN ? GO:0003723 ... Q5SHP9 31672910
    560473 6uo1:2Z (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 31672910
    560474 6uo1:2Z (2.95) BS02 rna ? GO:0003723 ... Q5SHZ1 31672910
    560475 6uo1:2b (2.95) BS01 rna ? GO:0003735 ... P80371 31672910
    560476 6uo1:2c (2.95) BS01 rna ? GO:0003676 ... P80372 31672910
    560477 6uo1:2d (2.95) BS01 rna ? GO:0003723 ... P80373 31672910
    560478 6uo1:2d (2.95) BS02 SF4 ? GO:0003723 ... P80373 31672910
    560479 6uo1:2e (2.95) BS01 rna ? GO:0003723 ... Q5SHQ5 31672910
    560480 6uo1:2e (2.95) BS02 MG ? GO:0003723 ... Q5SHQ5 31672910
    560481 6uo1:2f (2.95) BS01 rna ? GO:0003735 ... Q5SLP8 31672910
    560482 6uo1:2g (2.95) BS01 rna ? GO:0000049 ... P17291 31672910
    560483 6uo1:2g (2.95) BS02 rna ? GO:0000049 ... P17291 31672910
    560484 6uo1:2h (2.95) BS01 rna ? GO:0003735 ... P0DOY9 31672910
    560485 6uo1:2i (2.95) BS01 rna ? GO:0000049 ... P80374 31672910
    560486 6uo1:2j (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 31672910
    560487 6uo1:2k (2.95) BS01 rna ? GO:0003735 ... P80376 31672910
    560488 6uo1:2k (2.95) BS02 MG ? GO:0003735 ... P80376 31672910
    560489 6uo1:2l (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 31672910
    560490 6uo1:2l (2.95) BS02 rna ? GO:0000049 ... Q5SHN3 31672910
    560491 6uo1:2m (2.95) BS01 rna ? GO:0000049 ... P80377 31672910
    560492 6uo1:2m (2.95) BS02 rna ? GO:0000049 ... P80377 31672910
    560493 6uo1:2m (2.95) BS03 rna ? GO:0000049 ... P80377 31672910
    560494 6uo1:2n (2.95) BS01 rna ? GO:0003735 ... P0DOY6 31672910
    560495 6uo1:2n (2.95) BS02 ZN ? GO:0003735 ... P0DOY6 31672910
    560496 6uo1:2o (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 31672910
    560497 6uo1:2o (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 31672910
    560498 6uo1:2p (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 31672910
    560499 6uo1:2q (2.95) BS01 rna ? GO:0003735 ... P0DOY7 31672910
    560500 6uo1:2q (2.95) BS02 MG ? GO:0003735 ... P0DOY7 31672910
    560501 6uo1:2r (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 31672910
    560502 6uo1:2s (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 31672910
    560503 6uo1:2t (2.95) BS01 rna ? GO:0003723 ... P80380 31672910
    560504 6uo1:2t (2.95) BS02 MG ? GO:0003723 ... P80380 31672910
    560505 6uo2:A (1.65002) BS01 ZN ? N/A F8W4B7 31755702
    560506 6uo2:A (1.65002) BS02 TSN ? N/A F8W4B7 31755702
    560507 6uo2:A (1.65002) BS03 TSN ? N/A F8W4B7 31755702
    560508 6uo2:B (1.65002) BS01 TSN ? N/A F8W4B7 31755702
    560509 6uo2:B (1.65002) BS02 ZN ? N/A F8W4B7 31755702
    560510 6uo2:B (1.65002) BS03 TSN ? N/A F8W4B7 31755702
    560511 6uo3:A (1.09) BS01 ZN ? N/A F8W4B7 31755702
    560512 6uo3:A (1.09) BS02 QCP ? N/A F8W4B7 31755702
    560513 6uo4:A (1.26831) BS01 ZN ? N/A F8W4B7 31755702
    560514 6uo4:A (1.26831) BS02 TSN ? N/A F8W4B7 31755702
    560515 6uo4:A (1.26831) BS03 TSN ? N/A F8W4B7 31755702
    560516 6uo4:B (1.26831) BS01 TSN ? N/A F8W4B7 31755702
    560517 6uo4:B (1.26831) BS02 ZN ? N/A F8W4B7 31755702
    560518 6uo4:B (1.26831) BS03 TSN ? N/A F8W4B7 31755702
    560519 6uo5:A (1.43934) BS01 QCP ? N/A F8W4B7 31755702
    560520 6uo5:A (1.43934) BS02 ZN ? N/A F8W4B7 31755702
    560521 6uo6:A (2.15) BS01 MG 5.4.2.2 GO:0000287 ... P36871 32057119
    560522 6uo6:B (2.15) BS01 MG 5.4.2.2 GO:0000287 ... P36871 32057119
    560523 6uo7:A (1.39501) BS01 ZN ? N/A F8W4B7 31755702
    560524 6uo7:A (1.39501) BS02 QCP ? N/A F8W4B7 31755702
    560525 6uo8:A (3.63) BS01 QD7 ? GO:0004930 ... Q9UBS5 32555460 BindingDB: EC50=200nM
    560526 6uo8:A (3.63) BS02 QDA ? GO:0004930 ... Q9UBS5 32555460 BindingDB: EC50=741nM
    560527 6uo8:B (3.63) BS01 QDA ? GO:0004930 ... O75899 32555460
    560528 6uo9:A (4.8) BS01 QD7 ? GO:0004930 ... Q9UBS5 32555460 BindingDB: EC50=200nM
    560529 6uob:A (1.58001) BS01 PHE ? N/A F8W4B7 31755702
    560530 6uob:A (1.58001) BS02 ZN ? N/A F8W4B7 31755702
    560531 6uob:A (1.58001) BS03 P7D ? N/A F8W4B7 31755702
    560532 6uob:A (1.58001) BS04 P7D ? N/A F8W4B7 31755702
    560533 6uob:B (1.58001) BS01 P7D ? N/A F8W4B7 31755702
    560534 6uob:B (1.58001) BS02 ZN ? N/A F8W4B7 31755702
    560535 6uob:B (1.58001) BS03 P7D ? N/A F8W4B7 31755702
    560536 6uoc:A (1.40001) BS01 ZN ? N/A F8W4B7 31755702
    560537 6uoc:A (1.40001) BS02 QCM ? N/A F8W4B7 31755702
    560538 6uoe:H (1.8) BS01 peptide ? N/A P0DOX5 32745149
    560539 6uoe:L (1.8) BS01 peptide ? N/A P0DOX7 32745149
    560540 6uog:A (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560541 6uog:B (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560542 6uog:C (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560543 6uog:D (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560544 6uog:E (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560545 6uog:F (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560546 6uog:G (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560547 6uog:H (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560548 6uoh:A (2.1) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560549 6uoh:B (2.1) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    560550 6uoi:A (1.953) BS01 F3S 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560551 6uoi:A (1.953) BS02 FE 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560552 6uoi:B (1.953) BS01 F3S 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560553 6uoi:B (1.953) BS02 FE 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560554 6uoj:A (2.35) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560555 6uoj:B (2.35) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560556 6uok:A (2.55) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560557 6uok:A (2.55) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560558 6uok:A (2.55) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560559 6uok:A (2.55) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560560 6uok:A (2.55) BS05 8GT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560561 6uok:F (2.55) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560562 6uok:F (2.55) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560563 6uok:F (2.55) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560564 6uok:F (2.55) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560565 6uok:F (2.55) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560566 6uok:F (2.55) BS06 8GT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560567 6uok:F (2.55) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560568 6uol:A (1.936) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560569 6uol:A (1.936) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560570 6uol:A (1.936) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560571 6uol:A (1.936) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560572 6uol:A (1.936) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560573 6uol:A (1.936) BS06 GTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560574 6uol:A (1.936) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560575 6uol:A (1.936) BS08 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560576 6uom:A (2.05) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560577 6uom:A (2.05) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560578 6uom:A (2.05) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560579 6uom:A (2.05) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560580 6uom:A (2.05) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560581 6uom:A (2.05) BS06 8GT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    560582 6uon:A (3.5) BS01 peptide ? N/A C1K0Y1 32461371
    560583 6uon:D (3.5) BS01 peptide ? N/A C1K0Y1 32461371
    560584 6uon:H (3.5) BS01 peptide N/A N/A N/A 32461371
    560585 6uox:A (4.02) BS01 QDG ? GO:0005319 ... O15118 31919352
    560586 6uoz:A (1.532) BS01 QF1 ? GO:0000122 ... P61964 32223236 BindingDB: Kd=100nM
    560587 6uoz:B (1.532) BS01 QF1 ? GO:0000122 ... P61964 32223236 BindingDB: Kd=100nM
    560588 6up3:A (2.691) BS01 ANP 3.6.4.13 GO:0003676 ... Q8VHK9 N/A
    560589 6up4:A (2.4) BS01 ADP 3.6.4.13 GO:0003676 ... Q8VHK9 32087197
    560590 6up4:A (2.4) BS02 MG 3.6.4.13 GO:0003676 ... Q8VHK9 32087197
    560591 6up5:B (1.92) BS01 PGA 4.2.3.3
    5.3.1.1
    GO:0004807 ... P60174 32585311
    560592 6up7:B (4.2) BS01 peptide ? GO:0007165 ... P49407 31945771
    560593 6up7:B (4.2) BS02 PIO ? GO:0007165 ... P49407 31945771
    560594 6up7:R (4.2) BS01 peptide ? GO:0004930 ... P30989 31945771
    560595 6up7:R (4.2) BS02 PIO ? GO:0004930 ... P30989 31945771
    560596 6up9:A (1.949) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560597 6up9:B (1.949) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560598 6upa:A (2.51) BS01 GTP ? GO:0005525 ... Q15019 32910969
    560599 6upa:A (2.51) BS02 GDP ? GO:0005525 ... Q15019 32910969
    560600 6upa:B (2.51) BS01 GTP ? GO:0005525 ... Q14141 32910969

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).