SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    560601 6upa:B (2.51) BS02 GDP ? GO:0005525 ... Q14141 32910969
    560602 6upc:A (2.505) BS01 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560603 6upc:A (2.505) BS02 T6S 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560604 6upc:B (2.505) BS01 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560605 6upc:B (2.505) BS02 T6S 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560606 6upd:A (2.052) BS01 GLC 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560607 6upd:A (2.052) BS02 GLC 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560608 6upd:A (2.052) BS03 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560609 6upd:B (2.052) BS01 GLC 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560610 6upd:B (2.052) BS02 GLC 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560611 6upd:B (2.052) BS03 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560612 6upe:A (2.244) BS01 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560613 6upe:A (2.244) BS02 OGS 3.1.3.12 GO:0000287 ... E1WGG9 32786412 MOAD: Ki=56uM
    560614 6upe:B (2.244) BS01 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    560615 6upe:B (2.244) BS02 OGS 3.1.3.12 GO:0000287 ... E1WGG9 32786412 MOAD: Ki=56uM
    560616 6upf:A (1.65) BS01 PGA 4.2.3.3
    5.3.1.1
    GO:0004807 ... P60174 32585311
    560617 6upf:B (1.65) BS01 PGA 4.2.3.3
    5.3.1.1
    GO:0004807 ... P60174 32585311
    560618 6upg:A (1.393) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 N/A
    560619 6upg:A (1.393) BS02 KEQ 1.14.19.70 GO:0004497 ... P9WPP7 N/A BindingDB: Kd=10400nM
    560620 6uph:A (2.7) BS01 dna ? GO:0000070 ... P36012 32004465
    560621 6uph:B (2.7) BS01 dna ? GO:0000786 ... Q6CMU6 32004465
    560622 6uph:C (2.7) BS01 dna ? GO:0000786 ... Q6CK59 32004465
    560623 6uph:C (2.7) BS02 dna ? GO:0000786 ... Q6CK59 32004465
    560624 6uph:D (2.7) BS01 dna ? GO:0000786 ... Q6CK60 32004465
    560625 6uph:D (2.7) BS02 dna ? GO:0000786 ... Q6CK60 32004465
    560626 6uph:E (2.7) BS01 dna ? GO:0000070 ... P36012 32004465
    560627 6uph:E (2.7) BS02 dna ? GO:0000070 ... P36012 32004465
    560628 6uph:F (2.7) BS01 dna ? GO:0000786 ... Q6CMU6 32004465
    560629 6uph:G (2.7) BS01 dna ? GO:0000786 ... Q6CK59 32004465
    560630 6uph:G (2.7) BS02 dna ? GO:0000786 ... Q6CK59 32004465
    560631 6uph:H (2.7) BS01 dna ? GO:0000786 ... Q6CK60 32004465
    560632 6uph:H (2.7) BS02 dna ? GO:0000786 ... Q6CK60 32004465
    560633 6upi:A (1.808) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 N/A
    560634 6upi:A (1.808) BS02 QFD 1.14.19.70 GO:0004497 ... P9WPP7 N/A
    560635 6upj:A (2.34) BS01 NIU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47
    GO:0004190 ... P04584 7783120 MOAD: Ki=480nM
    560636 6upj:B (2.34) BS01 NIU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47
    GO:0004190 ... P04584 7783120
    560637 6upk:A (4.9) BS01 dna ? GO:0000786 ... P68431 31775157
    560638 6upk:A (4.9) BS02 dna ? GO:0000786 ... P68431 31775157
    560639 6upk:B (4.9) BS01 dna ? GO:0000781 ... P62805 31775157
    560640 6upk:B (4.9) BS02 dna ? GO:0000781 ... P62805 31775157
    560641 6upk:C (4.9) BS01 dna ? GO:0000786 ... Q93077 31775157
    560642 6upk:E (4.9) BS01 dna ? GO:0000786 ... P68431 31775157
    560643 6upk:E (4.9) BS02 dna ? GO:0000786 ... P68431 31775157
    560644 6upk:F (4.9) BS01 dna ? GO:0000781 ... P62805 31775157
    560645 6upk:F (4.9) BS02 dna ? GO:0000781 ... P62805 31775157
    560646 6upk:G (4.9) BS01 dna ? GO:0035101 ... Q9Y5B9 31775157
    560647 6upk:H (4.9) BS01 dna ? GO:0003677 ... Q08945 31775157
    560648 6upk:H (4.9) BS02 dna ? GO:0003677 ... Q08945 31775157
    560649 6upl:A (7.4) BS01 dna ? GO:0000786 ... P68431 31775157
    560650 6upl:A (7.4) BS02 dna ? GO:0000786 ... P68431 31775157
    560651 6upl:B (7.4) BS01 dna ? GO:0000781 ... P62805 31775157
    560652 6upl:B (7.4) BS02 dna ? GO:0000781 ... P62805 31775157
    560653 6upl:C (7.4) BS01 dna ? GO:0000786 ... Q93077 31775157
    560654 6upl:D (7.4) BS01 dna ? GO:0000786 ... P62807 31775157
    560655 6upl:E (7.4) BS01 dna ? GO:0000786 ... P68431 31775157
    560656 6upl:E (7.4) BS02 dna ? GO:0000786 ... P68431 31775157
    560657 6upl:F (7.4) BS01 dna ? GO:0000781 ... P62805 31775157
    560658 6upl:F (7.4) BS02 dna ? GO:0000781 ... P62805 31775157
    560659 6upl:G (7.4) BS01 dna ? GO:0035101 ... Q9Y5B9 31775157
    560660 6upl:H (7.4) BS01 dna ? GO:0003677 ... Q08945 31775157
    560661 6upl:H (7.4) BS02 dna ? GO:0003677 ... Q08945 31775157
    560662 6upl:K (7.4) BS01 dna ? GO:0000786 ... Q93077 31775157
    560663 6upl:L (7.4) BS01 dna ? GO:0000786 ... P62807 31775157
    560664 6upm:A (2.03) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560665 6upm:B (2.03) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560666 6upo:A (3.113) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560667 6upo:B (3.113) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560668 6upp:A (1.56) BS01 VRB ? N/A Q8DLC7 31852825
    560669 6upp:A (1.56) BS02 MG ? N/A Q8DLC7 31852825
    560670 6upp:B (1.56) BS01 VRB ? N/A Q8DLC7 31852825
    560671 6upp:B (1.56) BS02 MG ? N/A Q8DLC7 31852825
    560672 6upq:A (1.86) BS01 GDP ? GO:0005525 ... Q15019 32910969
    560673 6upq:A (1.86) BS02 GTP ? GO:0005525 ... Q15019 32910969
    560674 6upq:B (1.86) BS01 GDP ? GO:0005525 ... Q9NVA2 32910969
    560675 6upq:B (1.86) BS02 GTP ? GO:0005525 ... Q9NVA2 32910969
    560676 6upr:A (2.299) BS01 GDP ? GO:0005525 ... Q15019 32910969
    560677 6upr:A (2.299) BS02 GTP ? GO:0005525 ... Q15019 32910969
    560678 6upr:B (2.299) BS01 GDP ? GO:0005525 ... Q92599 32910969
    560679 6upr:B (2.299) BS02 GTP ? GO:0005525 ... Q92599 32910969
    560680 6upt:A (1.96) BS01 QFM ? N/A Q12888 N/A
    560681 6upv:A (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560682 6upv:B (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560683 6upv:C (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560684 6upv:D (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560685 6upv:E (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560686 6upw:A (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560687 6upw:B (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560688 6upw:C (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560689 6upw:D (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560690 6upw:E (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    560691 6upx:A (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P04050 32284409
    560692 6upx:A (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560693 6upx:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560694 6upx:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560695 6upx:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560696 6upx:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    560697 6upx:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P08518 32284409
    560698 6upx:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 32284409
    560699 6upx:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    560700 6upx:C (3.4) BS01 ZN ? GO:0000428 ... P16370 32284409
    560701 6upx:E (3.4) BS01 dna ? GO:0000428 ... P20434 32284409
    560702 6upx:I (3.4) BS01 ZN ? GO:0000428 ... P27999 32284409
    560703 6upx:I (3.4) BS02 ZN ? GO:0000428 ... P27999 32284409
    560704 6upx:J (3.4) BS01 ZN ? GO:0000428 ... P22139 32284409
    560705 6upx:L (3.4) BS01 ZN ? GO:0000428 ... P40422 32284409
    560706 6upy:A (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P04050 32284409
    560707 6upy:A (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560708 6upy:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560709 6upy:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560710 6upy:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560711 6upy:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    560712 6upy:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P08518 32284409
    560713 6upy:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 32284409
    560714 6upy:B (3.4) BS03 APC 2.7.7.6 GO:0000428 ... P08518 32284409
    560715 6upy:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    560716 6upy:C (3.4) BS01 ZN ? GO:0000428 ... P16370 32284409
    560717 6upy:E (3.4) BS01 dna ? GO:0000428 ... P20434 32284409
    560718 6upy:I (3.4) BS01 ZN ? GO:0000428 ... P27999 32284409
    560719 6upy:I (3.4) BS02 ZN ? GO:0000428 ... P27999 32284409
    560720 6upy:J (3.4) BS01 ZN ? GO:0000428 ... P22139 32284409
    560721 6upy:L (3.4) BS01 ZN ? GO:0000428 ... P40422 32284409
    560722 6upz:A (3.1) BS01 rna 2.7.7.6 GO:0000428 ... P04050 32284409
    560723 6upz:A (3.1) BS02 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560724 6upz:A (3.1) BS03 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560725 6upz:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560726 6upz:A (3.1) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560727 6upz:A (3.1) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    560728 6upz:B (3.1) BS01 rna 2.7.7.6 GO:0000428 ... P08518 32284409
    560729 6upz:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... P08518 32284409
    560730 6upz:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    560731 6upz:C (3.1) BS01 ZN ? GO:0000428 ... P16370 32284409
    560732 6upz:I (3.1) BS01 ZN ? GO:0000428 ... P27999 32284409
    560733 6upz:I (3.1) BS02 ZN ? GO:0000428 ... P27999 32284409
    560734 6upz:J (3.1) BS01 ZN ? GO:0000428 ... P22139 32284409
    560735 6upz:L (3.1) BS01 ZN ? GO:0000428 ... P40422 32284409
    560736 6uq0:A (3.56) BS01 rna 2.7.7.6 GO:0000428 ... P04050 32284409
    560737 6uq0:A (3.56) BS02 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560738 6uq0:A (3.56) BS03 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560739 6uq0:A (3.56) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560740 6uq0:A (3.56) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560741 6uq0:A (3.56) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    560742 6uq0:B (3.56) BS01 rna 2.7.7.6 GO:0000428 ... P08518 32284409
    560743 6uq0:B (3.56) BS02 dna 2.7.7.6 GO:0000428 ... P08518 32284409
    560744 6uq0:B (3.56) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    560745 6uq0:C (3.56) BS01 ZN ? GO:0000428 ... P16370 32284409
    560746 6uq0:E (3.56) BS01 dna ? GO:0000428 ... P20434 32284409
    560747 6uq0:I (3.56) BS01 ZN ? GO:0000428 ... P27999 32284409
    560748 6uq0:I (3.56) BS02 ZN ? GO:0000428 ... P27999 32284409
    560749 6uq0:J (3.56) BS01 ZN ? GO:0000428 ... P22139 32284409
    560750 6uq0:L (3.56) BS01 ZN ? GO:0000428 ... P40422 32284409
    560751 6uq1:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 32284409
    560752 6uq1:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560753 6uq1:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560754 6uq1:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560755 6uq1:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560756 6uq1:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    560757 6uq1:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 32284409
    560758 6uq1:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 32284409
    560759 6uq1:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    560760 6uq1:C (3.6) BS01 ZN ? GO:0000428 ... P16370 32284409
    560761 6uq1:E (3.6) BS01 dna ? GO:0000428 ... P20434 32284409
    560762 6uq1:I (3.6) BS01 ZN ? GO:0000428 ... P27999 32284409
    560763 6uq1:I (3.6) BS02 ZN ? GO:0000428 ... P27999 32284409
    560764 6uq1:J (3.6) BS01 ZN ? GO:0000428 ... P22139 32284409
    560765 6uq1:L (3.6) BS01 ZN ? GO:0000428 ... P40422 32284409
    560766 6uq2:A (3.2) BS01 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560767 6uq2:A (3.2) BS02 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560768 6uq2:A (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560769 6uq2:A (3.2) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560770 6uq2:A (3.2) BS05 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    560771 6uq2:B (3.2) BS01 rna 2.7.7.6 GO:0000428 ... P08518 32284409
    560772 6uq2:B (3.2) BS02 dna 2.7.7.6 GO:0000428 ... P08518 32284409
    560773 6uq2:B (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    560774 6uq2:C (3.2) BS01 ZN ? GO:0000428 ... P16370 32284409
    560775 6uq2:E (3.2) BS01 dna ? GO:0000428 ... P20434 32284409
    560776 6uq2:I (3.2) BS01 ZN ? GO:0000428 ... P27999 32284409
    560777 6uq2:I (3.2) BS02 ZN ? GO:0000428 ... P27999 32284409
    560778 6uq2:J (3.2) BS01 ZN ? GO:0000428 ... P22139 32284409
    560779 6uq2:L (3.2) BS01 ZN ? GO:0000428 ... P40422 32284409
    560780 6uq3:A (3.47) BS01 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560781 6uq3:A (3.47) BS02 dna 2.7.7.6 GO:0000428 ... P04050 32284409
    560782 6uq3:A (3.47) BS03 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    560783 6uq3:A (3.47) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560784 6uq3:A (3.47) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    560785 6uq3:B (3.47) BS01 rna 2.7.7.6 GO:0000428 ... P08518 32284409
    560786 6uq3:B (3.47) BS02 dna 2.7.7.6 GO:0000428 ... P08518 32284409
    560787 6uq3:B (3.47) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    560788 6uq3:C (3.47) BS01 ZN ? GO:0000428 ... P16370 32284409
    560789 6uq3:E (3.47) BS01 dna ? GO:0000428 ... P20434 32284409
    560790 6uq3:I (3.47) BS01 ZN ? GO:0000428 ... P27999 32284409
    560791 6uq3:I (3.47) BS02 ZN ? GO:0000428 ... P27999 32284409
    560792 6uq3:J (3.47) BS01 ZN ? GO:0000428 ... P22139 32284409
    560793 6uq3:L (3.47) BS01 ZN ? GO:0000428 ... P40422 32284409
    560794 6uq8:A (1.339) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560795 6uq8:B (1.339) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560796 6uq9:A (2.304) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560797 6uq9:B (2.304) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560798 6uqb:A (1.951) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560799 6uqb:B (1.951) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 31743022
    560800 6uqc:C (1.87) BS01 BMA ? N/A P01865 31856660

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).