SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    563401 6v3a:K (2.82) BS01 rna ? GO:0003735 ... B7IA20 31964740
    563402 6v3a:L (2.82) BS01 rna ? GO:0000049 ... B7IA32 31964740
    563403 6v3a:L (2.82) BS02 rna ? GO:0000049 ... B7IA32 31964740
    563404 6v3a:M (2.82) BS01 rna ? GO:0003735 ... B7IA13 31964740
    563405 6v3a:N (2.82) BS01 rna ? GO:0003735 ... B7IA23 31964740
    563406 6v3a:N (2.82) BS02 rna ? GO:0003735 ... B7IA23 31964740
    563407 6v3a:O (2.82) BS01 rna ? GO:0003735 ... B7IAS9 31964740
    563408 6v3a:O (2.82) BS02 rna ? GO:0003735 ... B7IAS9 31964740
    563409 6v3a:P (2.82) BS01 rna ? GO:0000027 ... V5VGC9 31964740
    563410 6v3a:Q (2.82) BS01 rna ? GO:0003723 ... B7I6V9 31964740
    563411 6v3a:R (2.82) BS01 rna ? GO:0003735 ... A0A009QSN8 31964740
    563412 6v3a:S (2.82) BS01 rna ? GO:0003735 ... B7IA37 31964740
    563413 6v3a:T (2.82) BS01 rna ? GO:0003723 ... B7IA28 31964740
    563414 6v3a:U (2.82) BS01 rna ? GO:0003723 ... B7I7B6 31964740
    563415 6v3a:V (2.82) BS01 rna ? GO:0003735 ... B7I6V8 31964740
    563416 6v3a:W (2.82) BS01 rna ? GO:0003735 ... S3NQR5 31964740
    563417 6v3a:X (2.82) BS01 rna ? GO:0003735 ... B7IA31 31964740
    563418 6v3a:Y (2.82) BS01 rna ? GO:0003735 ... N8V730 31964740
    563419 6v3a:Z (2.82) BS01 rna ? GO:0003735 ... B7I7A4 31964740
    563420 6v3a:b (2.82) BS01 rna ? GO:0003735 ... V5VBC2 31964740
    563421 6v3a:c (2.82) BS01 rna ? GO:0003676 ... V5V9N0 31964740
    563422 6v3a:d (2.82) BS01 rna ? GO:0003723 ... B7IA15 31964740
    563423 6v3a:e (2.82) BS01 rna ? GO:0003723 ... B7IA22 31964740
    563424 6v3a:f (2.82) BS01 rna ? GO:0003735 ... B7IBC1 31964740
    563425 6v3a:g (2.82) BS01 rna ? GO:0000049 ... B7I7S0 31964740
    563426 6v3a:h (2.82) BS01 rna ? GO:0003735 ... B7IA25 31964740
    563427 6v3a:i (2.82) BS01 rna ? GO:0003723 ... V5VBA5 31964740
    563428 6v3a:j (2.82) BS01 rna N/A GO:0003723 ... N/A 31964740
    563429 6v3a:k (2.82) BS01 rna ? GO:0003735 ... A0A062C259 31964740
    563430 6v3a:k (2.82) BS02 peptide ? GO:0003735 ... A0A062C259 31964740
    563431 6v3a:l (2.82) BS01 rna ? GO:0000049 ... B7I7R9 31964740
    563432 6v3a:m (2.82) BS01 rna ? GO:0000049 ... B7IA17 31964740
    563433 6v3a:n (2.82) BS01 rna ? GO:0003735 ... B7IA26 31964740
    563434 6v3a:o (2.82) BS01 rna ? GO:0003735 ... B7I3U0 31964740
    563435 6v3a:o (2.82) BS02 rna ? GO:0003735 ... B7I3U0 31964740
    563436 6v3a:p (2.82) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 31964740
    563437 6v3a:q (2.82) BS01 rna ? GO:0003735 ... B7IA30 31964740
    563438 6v3a:r (2.82) BS01 rna ? GO:0003735 ... A0A150HZL5 31964740
    563439 6v3a:s (2.82) BS01 rna ? GO:0000028 ... B7IA35 31964740
    563440 6v3a:s (2.82) BS02 rna ? GO:0000028 ... B7IA35 31964740
    563441 6v3a:t (2.82) BS01 rna ? GO:0003723 ... B7I5N9 31964740
    563442 6v3b:0 (2.91) BS01 rna ? GO:0003735 ... N/A 31964740
    563443 6v3b:1 (2.91) BS01 rna ? GO:0003735 ... N9DYI8 31964740
    563444 6v3b:2 (2.91) BS01 rna ? GO:0003735 ... B7I693 31964740
    563445 6v3b:3 (2.91) BS01 rna ? GO:0003735 ... A0A1Y3CHB1 31964740
    563446 6v3b:C (2.91) BS01 rna ? GO:0002181 ... B7IA36 31964740
    563447 6v3b:D (2.91) BS01 rna ? GO:0003735 ... B7IA39 31964740
    563448 6v3b:E (2.91) BS01 rna ? GO:0003735 ... B7IA38 31964740
    563449 6v3b:F (2.91) BS01 rna ? GO:0000049 ... B7IA27 31964740
    563450 6v3b:F (2.91) BS02 rna ? GO:0000049 ... B7IA27 31964740
    563451 6v3b:G (2.91) BS01 rna ? GO:0002181 ... B7IA24 31964740
    563452 6v3b:H (2.91) BS01 rna ? GO:0003735 ... B7IBC3 31964740
    563453 6v3b:I (2.91) BS01 rna ? GO:0003729 ... B7I9B0 31964740
    563454 6v3b:J (2.91) BS01 rna ? GO:0003735 ... N9NZ44 31964740
    563455 6v3b:J (2.91) BS02 rna ? GO:0003735 ... N9NZ44 31964740
    563456 6v3b:K (2.91) BS01 rna ? GO:0003735 ... B7IA20 31964740
    563457 6v3b:L (2.91) BS01 rna ? GO:0000049 ... B7IA32 31964740
    563458 6v3b:L (2.91) BS02 rna ? GO:0000049 ... B7IA32 31964740
    563459 6v3b:M (2.91) BS01 rna ? GO:0003735 ... B7IA13 31964740
    563460 6v3b:N (2.91) BS01 rna ? GO:0003735 ... B7IA23 31964740
    563461 6v3b:N (2.91) BS02 rna ? GO:0003735 ... B7IA23 31964740
    563462 6v3b:O (2.91) BS01 rna ? GO:0003735 ... B7IAS9 31964740
    563463 6v3b:O (2.91) BS02 rna ? GO:0003735 ... B7IAS9 31964740
    563464 6v3b:P (2.91) BS01 rna ? GO:0000027 ... V5VGC9 31964740
    563465 6v3b:Q (2.91) BS01 rna ? GO:0003723 ... B7I6V9 31964740
    563466 6v3b:R (2.91) BS01 rna ? GO:0003735 ... A0A009QSN8 31964740
    563467 6v3b:S (2.91) BS01 rna ? GO:0003735 ... B7IA37 31964740
    563468 6v3b:T (2.91) BS01 rna ? GO:0003723 ... B7IA28 31964740
    563469 6v3b:U (2.91) BS01 rna ? GO:0003723 ... B7I7B6 31964740
    563470 6v3b:U (2.91) BS02 rna ? GO:0003723 ... B7I7B6 31964740
    563471 6v3b:V (2.91) BS01 rna ? GO:0003735 ... B7I6V8 31964740
    563472 6v3b:W (2.91) BS01 rna ? GO:0003735 ... S3NQR5 31964740
    563473 6v3b:X (2.91) BS01 rna ? GO:0003735 ... B7IA31 31964740
    563474 6v3b:Y (2.91) BS01 rna ? GO:0003735 ... N8V730 31964740
    563475 6v3b:Z (2.91) BS01 rna ? GO:0003735 ... B7I7A4 31964740
    563476 6v3b:b (2.91) BS01 rna ? GO:0003735 ... V5VBC2 31964740
    563477 6v3b:c (2.91) BS01 rna ? GO:0003676 ... V5V9N0 31964740
    563478 6v3b:d (2.91) BS01 rna ? GO:0003723 ... B7IA15 31964740
    563479 6v3b:e (2.91) BS01 rna ? GO:0003723 ... B7IA22 31964740
    563480 6v3b:f (2.91) BS01 rna ? GO:0003735 ... B7IBC1 31964740
    563481 6v3b:g (2.91) BS01 rna ? GO:0000049 ... B7I7S0 31964740
    563482 6v3b:h (2.91) BS01 rna ? GO:0003735 ... B7IA25 31964740
    563483 6v3b:i (2.91) BS01 rna ? GO:0003723 ... V5VBA5 31964740
    563484 6v3b:j (2.91) BS01 rna N/A GO:0003723 ... N/A 31964740
    563485 6v3b:k (2.91) BS01 rna ? GO:0003735 ... A0A062C259 31964740
    563486 6v3b:k (2.91) BS02 peptide ? GO:0003735 ... A0A062C259 31964740
    563487 6v3b:l (2.91) BS01 rna ? GO:0000049 ... B7I7R9 31964740
    563488 6v3b:m (2.91) BS01 rna ? GO:0000049 ... B7IA17 31964740
    563489 6v3b:n (2.91) BS01 rna ? GO:0003735 ... B7IA26 31964740
    563490 6v3b:o (2.91) BS01 rna ? GO:0003735 ... B7I3U0 31964740
    563491 6v3b:o (2.91) BS02 rna ? GO:0003735 ... B7I3U0 31964740
    563492 6v3b:p (2.91) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 31964740
    563493 6v3b:q (2.91) BS01 rna ? GO:0003735 ... B7IA30 31964740
    563494 6v3b:r (2.91) BS01 rna ? GO:0003735 ... A0A150HZL5 31964740
    563495 6v3b:s (2.91) BS01 rna ? GO:0000028 ... B7IA35 31964740
    563496 6v3b:s (2.91) BS02 rna ? GO:0000028 ... B7IA35 31964740
    563497 6v3b:t (2.91) BS01 rna ? GO:0003723 ... B7I5N9 31964740
    563498 6v3c:A (3.51) BS01 K ? GO:0005267 ... P97438 32059793
    563499 6v3c:A (3.51) BS02 K ? GO:0005267 ... P97438 32059793
    563500 6v3c:A (3.51) BS03 K ? GO:0005267 ... P97438 32059793
    563501 6v3c:A (3.51) BS04 K ? GO:0005267 ... P97438 32059793
    563502 6v3c:B (3.51) BS01 K ? GO:0005267 ... P97438 32059793
    563503 6v3c:B (3.51) BS02 K ? GO:0005267 ... P97438 32059793
    563504 6v3c:B (3.51) BS03 K ? GO:0005267 ... P97438 32059793
    563505 6v3c:B (3.51) BS04 K ? GO:0005267 ... P97438 32059793
    563506 6v3d:0 (2.95) BS01 rna ? GO:0003735 ... N/A 31964740
    563507 6v3d:1 (2.95) BS01 rna ? GO:0003735 ... N9DYI8 31964740
    563508 6v3d:2 (2.95) BS01 rna ? GO:0003735 ... B7I693 31964740
    563509 6v3d:3 (2.95) BS01 rna ? GO:0003735 ... A0A1Y3CHB1 31964740
    563510 6v3d:3 (2.95) BS02 ZN ? GO:0003735 ... A0A1Y3CHB1 31964740
    563511 6v3d:C (2.95) BS01 rna ? GO:0002181 ... B7IA36 31964740
    563512 6v3d:D (2.95) BS01 rna ? GO:0003735 ... B7IA39 31964740
    563513 6v3d:E (2.95) BS01 rna ? GO:0003735 ... B7IA38 31964740
    563514 6v3d:F (2.95) BS01 rna ? GO:0000049 ... B7IA27 31964740
    563515 6v3d:F (2.95) BS02 rna ? GO:0000049 ... B7IA27 31964740
    563516 6v3d:G (2.95) BS01 rna ? GO:0002181 ... B7IA24 31964740
    563517 6v3d:H (2.95) BS01 rna ? GO:0003735 ... B7IBC3 31964740
    563518 6v3d:I (2.95) BS01 rna ? GO:0003729 ... B7I9B0 31964740
    563519 6v3d:J (2.95) BS01 rna ? GO:0003735 ... N9NZ44 31964740
    563520 6v3d:K (2.95) BS01 rna ? GO:0003735 ... B7IA20 31964740
    563521 6v3d:L (2.95) BS01 rna ? GO:0000049 ... B7IA32 31964740
    563522 6v3d:L (2.95) BS02 rna ? GO:0000049 ... B7IA32 31964740
    563523 6v3d:M (2.95) BS01 rna ? GO:0003735 ... B7IA13 31964740
    563524 6v3d:N (2.95) BS01 rna ? GO:0003735 ... B7IA23 31964740
    563525 6v3d:N (2.95) BS02 rna ? GO:0003735 ... B7IA23 31964740
    563526 6v3d:O (2.95) BS01 rna ? GO:0003735 ... B7IAS9 31964740
    563527 6v3d:P (2.95) BS01 rna ? GO:0000027 ... V5VGC9 31964740
    563528 6v3d:Q (2.95) BS01 rna ? GO:0003723 ... B7I6V9 31964740
    563529 6v3d:R (2.95) BS01 rna ? GO:0003735 ... A0A009QSN8 31964740
    563530 6v3d:S (2.95) BS01 rna ? GO:0003735 ... B7IA37 31964740
    563531 6v3d:T (2.95) BS01 rna ? GO:0003723 ... B7IA28 31964740
    563532 6v3d:U (2.95) BS01 rna ? GO:0003723 ... B7I7B6 31964740
    563533 6v3d:V (2.95) BS01 rna ? GO:0003735 ... B7I6V8 31964740
    563534 6v3d:W (2.95) BS01 rna ? GO:0003735 ... S3NQR5 31964740
    563535 6v3d:X (2.95) BS01 rna ? GO:0003735 ... B7IA31 31964740
    563536 6v3d:Y (2.95) BS01 rna ? GO:0003735 ... N8V730 31964740
    563537 6v3d:Z (2.95) BS01 rna ? GO:0003735 ... B7I7A4 31964740
    563538 6v3e:b (4.4) BS01 rna ? GO:0003735 ... V5VBC2 31964740
    563539 6v3e:c (4.4) BS01 rna ? GO:0003676 ... V5V9N0 31964740
    563540 6v3e:d (4.4) BS01 rna ? GO:0003723 ... B7IA15 31964740
    563541 6v3e:e (4.4) BS01 rna ? GO:0003723 ... B7IA22 31964740
    563542 6v3e:f (4.4) BS01 rna ? GO:0003735 ... B7IBC1 31964740
    563543 6v3e:g (4.4) BS01 rna ? GO:0000049 ... B7I7S0 31964740
    563544 6v3e:h (4.4) BS01 rna ? GO:0003735 ... B7IA25 31964740
    563545 6v3e:i (4.4) BS01 rna ? GO:0003723 ... V5VBA5 31964740
    563546 6v3e:j (4.4) BS01 rna N/A GO:0003723 ... N/A 31964740
    563547 6v3e:k (4.4) BS01 rna ? GO:0003735 ... A0A062C259 31964740
    563548 6v3e:l (4.4) BS01 rna ? GO:0000049 ... B7I7R9 31964740
    563549 6v3e:m (4.4) BS01 rna ? GO:0000049 ... B7IA17 31964740
    563550 6v3e:n (4.4) BS01 rna ? GO:0003735 ... B7IA26 31964740
    563551 6v3e:o (4.4) BS01 rna ? GO:0003735 ... B7I3U0 31964740
    563552 6v3e:p (4.4) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 31964740
    563553 6v3e:q (4.4) BS01 rna ? GO:0003735 ... B7IA30 31964740
    563554 6v3e:r (4.4) BS01 rna ? GO:0003735 ... A0A150HZL5 31964740
    563555 6v3e:s (4.4) BS01 rna ? GO:0000028 ... B7IA35 31964740
    563556 6v3e:t (4.4) BS01 rna ? GO:0003723 ... B7I5N9 31964740
    563557 6v3f:A (3.7) BS01 CLR ? GO:0005319 ... Q6T3U3 N/A
    563558 6v3h:A (3.5) BS01 Y01 ? GO:0005319 ... Q6T3U3 N/A
    563559 6v3h:A (3.5) BS02 QO1 ? GO:0005319 ... Q6T3U3 N/A BindingDB: IC50=4nM
    563560 6v3i:A (3.4) BS01 K ? GO:0005267 ... P97438 32059793
    563561 6v3i:A (3.4) BS02 K ? GO:0005267 ... P97438 32059793
    563562 6v3i:A (3.4) BS03 K ? GO:0005267 ... P97438 32059793
    563563 6v3i:A (3.4) BS04 K ? GO:0005267 ... P97438 32059793
    563564 6v3i:B (3.4) BS01 K ? GO:0005267 ... P97438 32059793
    563565 6v3i:B (3.4) BS02 K ? GO:0005267 ... P97438 32059793
    563566 6v3i:B (3.4) BS03 K ? GO:0005267 ... P97438 32059793
    563567 6v3i:B (3.4) BS04 K ? GO:0005267 ... P97438 32059793
    563568 6v3j:A (1.98) BS01 peptide ? N/A I3ZN84 32404419
    563569 6v3k:A (3.4) BS01 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563570 6v3k:A (3.4) BS02 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563571 6v3k:A (3.4) BS03 MG ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563572 6v3k:A (3.4) BS04 MG ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563573 6v3k:A (3.4) BS05 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563574 6v3k:A (3.4) BS06 QUW ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563575 6v3k:B (3.4) BS01 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563576 6v3k:C (3.4) BS01 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563577 6v3k:D (3.4) BS01 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    563578 6v3m:A (1.55) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    563579 6v3m:A (1.55) BS02 QOG 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    563580 6v3m:B (1.55) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    563581 6v3m:B (1.55) BS02 QOG 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    563582 6v3m:C (1.55) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    563583 6v3m:C (1.55) BS02 QOG 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    563584 6v3n:A (2.7) BS01 peptide ? N/A Q8N8U2 32470319
    563585 6v3n:B (2.7) BS01 peptide ? N/A Q8N8U2 32470319
    563586 6v3q:A (2.4) BS01 ZN 3.5.2.6 GO:0046872 ... K7SA42 N/A
    563587 6v3q:B (2.4) BS01 ZN 3.5.2.6 GO:0046872 ... K7SA42 N/A
    563588 6v3r:A (2.66) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 33062168
    563589 6v3r:A (2.66) BS02 Y8A 1.14.99.1 GO:0001516 ... Q05769 33062168
    563590 6v3r:B (2.66) BS01 Y8A 1.14.99.1 GO:0001516 ... Q05769 33062168
    563591 6v3r:B (2.66) BS02 HEM 1.14.99.1 GO:0001516 ... Q05769 33062168
    563592 6v3r:C (2.66) BS01 Y8A 1.14.99.1 GO:0001516 ... Q05769 33062168
    563593 6v3r:C (2.66) BS02 HEM 1.14.99.1 GO:0001516 ... Q05769 33062168
    563594 6v3r:D (2.66) BS01 Y8A 1.14.99.1 GO:0001516 ... Q05769 33062168
    563595 6v3r:D (2.66) BS02 HEM 1.14.99.1 GO:0001516 ... Q05769 33062168
    563596 6v3t:A (2.84) BS01 ACO ? GO:0008080 ... D2A2Z2 31967772
    563597 6v3t:B (2.84) BS01 ACO ? GO:0008080 ... D2A2Z2 31967772
    563598 6v3t:C (2.84) BS01 ACO ? GO:0008080 ... D2A2Z2 31967772
    563599 6v3t:D (2.84) BS01 ACO ? GO:0008080 ... D2A2Z2 31967772
    563600 6v3t:E (2.84) BS01 ACO ? GO:0008080 ... D2A2Z2 31967772

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).