SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    566001 6vm3:A (3.07) BS02 IVM ? GO:0004888 ... O93430 32719334
    566002 6vm3:A (3.07) BS03 IVM ? GO:0004888 ... O93430 32719334
    566003 6vm3:A (3.07) BS04 GLY ? GO:0004888 ... O93430 32719334
    566004 6vm3:B (3.07) BS01 IVM ? GO:0004888 ... O93430 32719334
    566005 6vm3:B (3.07) BS02 GLY ? GO:0004888 ... O93430 32719334
    566006 6vm3:B (3.07) BS03 GLY ? GO:0004888 ... O93430 32719334
    566007 6vm3:B (3.07) BS04 IVM ? GO:0004888 ... O93430 32719334
    566008 6vm3:C (3.07) BS01 IVM ? GO:0004888 ... O93430 32719334
    566009 6vm3:C (3.07) BS02 GLY ? GO:0004888 ... O93430 32719334
    566010 6vm3:C (3.07) BS03 IVM ? GO:0004888 ... O93430 32719334
    566011 6vm3:C (3.07) BS04 GLY ? GO:0004888 ... O93430 32719334
    566012 6vm3:D (3.07) BS01 IVM ? GO:0004888 ... O93430 32719334
    566013 6vm3:D (3.07) BS02 GLY ? GO:0004888 ... O93430 32719334
    566014 6vm3:D (3.07) BS03 GLY ? GO:0004888 ... O93430 32719334
    566015 6vm3:D (3.07) BS04 IVM ? GO:0004888 ... O93430 32719334
    566016 6vm3:E (3.07) BS01 GLY ? GO:0004888 ... O93430 32719334
    566017 6vm3:E (3.07) BS02 IVM ? GO:0004888 ... O93430 32719334
    566018 6vm3:E (3.07) BS03 GLY ? GO:0004888 ... O93430 32719334
    566019 6vm3:E (3.07) BS04 IVM ? GO:0004888 ... O93430 32719334
    566020 6vm6:A (2.1) BS01 rna 3.1.-.- GO:0000166 ... C0VHC9 32544385
    566021 6vm6:B (2.1) BS01 rna 3.1.-.- GO:0000166 ... C0VHC9 32544385
    566022 6vm6:C (2.1) BS01 rna 3.1.-.- GO:0000166 ... C0VHC9 32544385
    566023 6vm6:D (2.1) BS01 rna 3.1.-.- GO:0000166 ... C0VHC9 32544385
    566024 6vm6:E (2.1) BS01 rna 3.1.-.- GO:0000166 ... C0VHC9 32544385
    566025 6vm7:A (2.41) BS01 peptide ? N/A A0A140T913 N/A
    566026 6vm8:A (2.41) BS01 peptide ? N/A A0A140T913 33468649
    566027 6vm9:A (2.9) BS01 peptide ? N/A A0A140T913 N/A
    566028 6vma:A (2.75) BS01 peptide ? N/A A0A140T913 N/A
    566029 6vmb:A (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    566030 6vmb:A (5.23) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    566031 6vmb:B (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    566032 6vmb:B (5.23) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    566033 6vmb:C (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    566034 6vmb:D (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    566035 6vmb:D (5.23) BS02 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    566036 6vmb:E (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    566037 6vmb:F (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    566038 6vmb:F (5.23) BS02 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    566039 6vmc:A (2.85) BS01 peptide ? N/A A0A140T913 N/A
    566040 6vmd:A (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    566041 6vmd:B (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    566042 6vmd:C (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    566043 6vmd:D (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    566044 6vmd:E (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    566045 6vmd:F (4.53) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    566046 6vme:B (2.19) BS01 peptide ? N/A Q99816 32424346
    566047 6vme:C (2.19) BS01 peptide ? N/A Q9H9H4 32424346
    566048 6vme:F (2.19) BS01 peptide ? N/A Q99816 32424346
    566049 6vme:G (2.19) BS01 peptide ? N/A Q99816 32424346
    566050 6vme:H (2.19) BS01 peptide ? N/A Q99816 32424346
    566051 6vme:I (2.19) BS01 peptide ? N/A Q99816 32424346
    566052 6vme:J (2.19) BS01 peptide ? N/A Q99816 32424346
    566053 6vme:K (2.19) BS01 peptide ? N/A Q9H9H4 32424346
    566054 6vme:L (2.19) BS01 peptide ? N/A Q9H9H4 32424346
    566055 6vme:M (2.19) BS01 peptide ? N/A Q9H9H4 32424346
    566056 6vme:N (2.19) BS01 peptide ? N/A Q9H9H4 32424346
    566057 6vme:V (2.19) BS01 peptide ? GO:0000813 ... Q9UK41 32424346
    566058 6vme:Y (2.19) BS01 peptide ? GO:0000813 ... Q9UK41 32424346
    566059 6vmf:A (2.24) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566060 6vmf:B (2.24) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566061 6vmf:C (2.24) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566062 6vmf:D (2.24) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566063 6vmi:0 (2.96) BS01 rna ? GO:0003723 ... Q9BYC8 32737313
    566064 6vmi:0 (2.96) BS02 ZN ? GO:0003723 ... Q9BYC8 32737313
    566065 6vmi:1 (2.96) BS01 rna ? GO:0003735 ... O75394 32737313
    566066 6vmi:2 (2.96) BS01 rna ? GO:0003735 ... Q9BQ48 32737313
    566067 6vmi:3 (2.96) BS01 rna ? GO:0003735 ... Q9NZE8 32737313
    566068 6vmi:4 (2.96) BS01 rna ? GO:0003735 ... Q9P0J6 32737313
    566069 6vmi:4 (2.96) BS02 ZN ? GO:0003735 ... Q9P0J6 32737313
    566070 6vmi:5 (2.96) BS01 rna ? GO:0003723 ... Q9BZE1 32737313
    566071 6vmi:6 (2.96) BS01 rna ? GO:0005515 ... Q96DV4 32737313
    566072 6vmi:6 (2.96) BS02 rna ? GO:0005515 ... Q96DV4 32737313
    566073 6vmi:8 (2.96) BS01 rna ? GO:0003723 ... Q9NQ50 32737313
    566074 6vmi:9 (2.96) BS01 rna ? GO:0003723 ... Q8IXM3 32737313
    566075 6vmi:A0 (2.96) BS01 rna ? GO:0003735 ... P82930 32737313
    566076 6vmi:A2 (2.96) BS01 rna ? GO:0001650 ... Q96BP2 32737313
    566077 6vmi:A3 (2.96) BS01 rna ? GO:0005515 ... Q9NWT8 32737313
    566078 6vmi:A3 (2.96) BS02 rna ? GO:0005515 ... Q9NWT8 32737313
    566079 6vmi:AB (2.96) BS01 rna ? GO:0003735 ... Q9Y399 32737313
    566080 6vmi:AB (2.96) BS02 ZN ? GO:0003735 ... Q9Y399 32737313
    566081 6vmi:AC (2.96) BS01 rna ? GO:0003723 ... Q96EL2 32737313
    566082 6vmi:AD (2.96) BS01 rna ? GO:0003723 ... P82675 32737313
    566083 6vmi:AD (2.96) BS02 rna ? GO:0003723 ... P82675 32737313
    566084 6vmi:AE (2.96) BS01 rna ? GO:0003735 ... P82932 32737313
    566085 6vmi:AF (2.96) BS01 rna ? GO:0000028 ... Q9Y2R9 32737313
    566086 6vmi:AG (2.96) BS01 rna ? GO:0003723 ... P82933 32737313
    566087 6vmi:AG (2.96) BS02 rna ? GO:0003723 ... P82933 32737313
    566088 6vmi:AH (2.96) BS01 rna ? GO:0005739 ... P82664 32737313
    566089 6vmi:AI (2.96) BS01 rna ? GO:0003723 ... P82912 32737313
    566090 6vmi:AJ (2.96) BS01 rna ? GO:0003723 ... O15235 32737313
    566091 6vmi:AK (2.96) BS01 rna ? GO:0003723 ... O60783 32737313
    566092 6vmi:AL (2.96) BS01 rna ? GO:0003723 ... P82914 32737313
    566093 6vmi:AM (2.96) BS01 rna ? GO:0003735 ... Q9Y3D3 32737313
    566094 6vmi:AN (2.96) BS01 rna ? GO:0003735 ... Q9Y2R5 32737313
    566095 6vmi:AO (2.96) BS01 rna ? GO:0003735 ... Q9Y676 32737313
    566096 6vmi:AP (2.96) BS01 rna ? GO:0003735 ... Q9Y3D5 32737313
    566097 6vmi:AQ (2.96) BS01 rna ? GO:0003723 ... P82921 32737313
    566098 6vmi:AS (2.96) BS01 rna ? GO:0003723 ... Q9Y3D9 32737313
    566099 6vmi:AT (2.96) BS01 rna ? GO:0003735 ... P82663 32737313
    566100 6vmi:AU (2.96) BS01 rna ? GO:0003723 ... Q9BYN8 32737313
    566101 6vmi:AV (2.96) BS01 rna ? GO:0000049 ... Q92552 32737313
    566102 6vmi:AX (2.96) BS01 rna ? GO:0003723 ... P51398 32737313
    566103 6vmi:AX (2.96) BS02 GDP ? GO:0003723 ... P51398 32737313
    566104 6vmi:AZ (2.96) BS01 rna ? GO:0003735 ... Q9Y291 32737313
    566105 6vmi:D (2.96) BS01 rna ? GO:0003723 ... Q5T653 32737313
    566106 6vmi:E (2.96) BS01 rna ? GO:0003723 ... P09001 32737313
    566107 6vmi:F (2.96) BS01 rna ? GO:0003723 ... Q9BYD3 32737313
    566108 6vmi:F (2.96) BS02 MG ? GO:0003723 ... Q9BYD3 32737313
    566109 6vmi:H (2.96) BS01 rna ? GO:0003723 ... Q9BYD2 32737313
    566110 6vmi:I (2.96) BS01 rna ? GO:0003723 ... Q7Z7H8 32737313
    566111 6vmi:I (2.96) BS02 peptide ? GO:0003723 ... Q7Z7H8 32737313
    566112 6vmi:J (2.96) BS01 rna ? GO:0003723 ... Q9Y3B7 32737313
    566113 6vmi:K (2.96) BS01 rna ? GO:0003723 ... Q9BYD1 32737313
    566114 6vmi:L (2.96) BS01 rna ? GO:0003723 ... Q6P1L8 32737313
    566115 6vmi:M (2.96) BS01 rna ? GO:0003723 ... Q9P015 32737313
    566116 6vmi:N (2.96) BS01 rna ? GO:0003735 ... Q9NX20 32737313
    566117 6vmi:O (2.96) BS01 rna ? GO:0003735 ... Q9NRX2 32737313
    566118 6vmi:P (2.96) BS01 rna ? GO:0003735 ... A8K9D2 32737313
    566119 6vmi:P (2.96) BS02 rna ? GO:0003735 ... A8K9D2 32737313
    566120 6vmi:Q (2.96) BS01 rna ? GO:0003735 ... P49406 32737313
    566121 6vmi:R (2.96) BS01 rna ? GO:0003723 ... Q9BYC9 32737313
    566122 6vmi:S (2.96) BS01 rna ? GO:0003723 ... Q7Z2W9 32737313
    566123 6vmi:T (2.96) BS01 rna ? GO:0003735 ... E7ESL0 32737313
    566124 6vmi:TA (2.96) BS01 peptide ? GO:0003723 ... P52815 32737313
    566125 6vmi:U (2.96) BS01 rna ? GO:0001650 ... Q16540 32737313
    566126 6vmi:V (2.96) BS01 rna ? GO:0003723 ... Q96A35 32737313
    566127 6vmi:W (2.96) BS01 rna ? GO:0003723 ... Q9P0M9 32737313
    566128 6vmi:X (2.96) BS01 rna ? GO:0003723 ... Q13084 32737313
    566129 6vmi:Y (2.96) BS01 rna ? GO:0003735 ... Q9HD33 32737313
    566130 6vmi:Z (2.96) BS01 rna ? GO:0003735 ... Q8TCC3 32737313
    566131 6vmi:a (2.96) BS01 rna ? GO:0003723 ... Q9Y6G3 32737313
    566132 6vmi:b (2.96) BS01 rna ? GO:0003735 ... Q8N983 32737313
    566133 6vmi:c (2.96) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 32737313
    566134 6vmi:d (2.96) BS01 rna ? GO:0003723 ... Q9BRJ2 32737313
    566135 6vmi:f (2.96) BS01 rna ? GO:0005515 ... Q96GC5 32737313
    566136 6vmi:f (2.96) BS02 rna ? GO:0005515 ... Q96GC5 32737313
    566137 6vmi:g (2.96) BS01 rna ? GO:0003735 ... Q13405 32737313
    566138 6vmi:i (2.96) BS01 rna ? GO:0003735 ... Q4U2R6 32737313
    566139 6vmi:j (2.96) BS01 rna ? GO:0003735 ... A8K7J6 32737313
    566140 6vmi:l (2.96) BS01 rna ? GO:0003723 ... Q6P161 32737313
    566141 6vmi:o (2.96) BS01 rna ? GO:0003735 ... Q9BQC6 32737313
    566142 6vmi:q (2.96) BS01 rna ? GO:0005515 ... Q8TAE8 32737313
    566143 6vmi:r (2.96) BS01 rna ? GO:0003735 ... Q9NVS2 32737313
    566144 6vmi:s (2.96) BS01 rna ? GO:0003723 ... Q9NP92 32737313
    566145 6vmi:v (2.96) BS01 rna ? GO:0003723 ... Q96RP9 32737313
    566146 6vmi:v (2.96) BS02 rna ? GO:0003723 ... Q96RP9 32737313
    566147 6vmi:v (2.96) BS03 rna ? GO:0003723 ... Q96RP9 32737313
    566148 6vmi:v (2.96) BS04 MG ? GO:0003723 ... Q96RP9 32737313
    566149 6vms:R (3.8) BS01 08Y 3.2.1.17 GO:0003796 ... D9IEF7
    P14416
    32528175
    566150 6vmv:A (2.2) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566151 6vmv:B (2.2) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566152 6vmv:C (2.2) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566153 6vmv:D (2.2) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566154 6vmw:A (1.99) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566155 6vmw:B (1.99) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566156 6vmw:C (1.99) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566157 6vmw:D (1.99) BS01 MG ? GO:0046872 ... A0A161XU12 32234764
    566158 6vmx:A (3.1) BS01 peptide ? N/A P01889 32817371
    566159 6vmx:D (3.1) BS01 peptide N/A N/A N/A 32817371
    566160 6vmx:E (3.1) BS01 peptide N/A N/A N/A 32817371
    566161 6vmx:F (3.1) BS01 peptide ? N/A P01889 32817371
    566162 6vmx:I (3.1) BS01 peptide N/A N/A N/A 32817371
    566163 6vmx:J (3.1) BS01 peptide N/A N/A N/A 32817371
    566164 6vmz:A (2.2) BS01 R3P ? GO:0019031 ... Q1KHJ8 32611549
    566165 6vmz:B (2.2) BS01 R3P ? GO:0019031 ... Q1KHK7 32611549
    566166 6vmz:C (2.2) BS01 R3P ? GO:0019031 ... Q1KHJ8 32611549
    566167 6vmz:D (2.2) BS01 R3P ? GO:0019031 ... Q1KHK7 32611549
    566168 6vmz:E (2.2) BS01 R3P ? GO:0019031 ... Q1KHJ8 32611549
    566169 6vmz:F (2.2) BS01 R3P ? GO:0019031 ... Q1KHK7 32611549
    566170 6vn2:A (2.93) BS01 R44 3.4.19.12 GO:0004843 ... Q93009 32302140 BindingDB: IC50=0.180000nM
    566171 6vn2:B (2.93) BS01 R44 3.4.19.12 GO:0004843 ... Q93009 32302140 BindingDB: IC50=0.180000nM
    566172 6vn3:A (2.73) BS01 R3Y 3.4.19.12 GO:0004843 ... Q93009 32302140 BindingDB: IC50=1.2nM, EC50=560nM
    566173 6vn3:B (2.73) BS01 R3Y 3.4.19.12 GO:0004843 ... Q93009 32302140 BindingDB: IC50=1.2nM, EC50=560nM
    566174 6vn4:A (2.69) BS01 R4D 3.4.19.12 GO:0004843 ... Q93009 32302140 BindingDB: IC50=8200nM
    566175 6vn4:B (2.69) BS01 R4D 3.4.19.12 GO:0004843 ... Q93009 32302140 BindingDB: IC50=8200nM
    566176 6vn5:A (2.9) BS01 R41 3.4.19.12 GO:0004843 ... Q93009 32302140 BindingDB: IC50=5600nM
    566177 6vn5:B (2.9) BS01 R41 3.4.19.12 GO:0004843 ... Q93009 32302140 BindingDB: IC50=5600nM
    566178 6vn6:A (2.99) BS01 R4J 3.4.19.12 GO:0004843 ... Q93009 32302140
    566179 6vn6:A (2.99) BS02 ZN 3.4.19.12 GO:0004843 ... Q93009 32302140
    566180 6vn6:B (2.99) BS01 R4J 3.4.19.12 GO:0004843 ... Q93009 32302140
    566181 6vn6:B (2.99) BS02 ZN 3.4.19.12 GO:0004843 ... Q93009 32302140
    566182 6vn7:R (3.2) BS01 peptide ? GO:0001634 ... P32241 32807782
    566183 6vn7:R (3.2) BS02 CLR ? GO:0001634 ... P32241 32807782
    566184 6vn7:R (3.2) BS03 CLR ? GO:0001634 ... P32241 32807782
    566185 6vn7:R (3.2) BS04 CLR ? GO:0001634 ... P32241 32807782
    566186 6vn7:R (3.2) BS05 CLR ? GO:0001634 ... P32241 32807782
    566187 6vn7:R (3.2) BS06 CLR ? GO:0001634 ... P32241 32807782
    566188 6vn7:R (3.2) BS07 CLR ? GO:0001634 ... P32241 32807782
    566189 6vn8:A (1.9) BS01 3JW 2.7.10.2 GO:0004672 ... O60674 33570945 BindingDB: IC50=5.7nM
    566190 6vn8:B (1.9) BS01 3JW 2.7.10.2 GO:0004672 ... O60674 33570945 BindingDB: IC50=5.7nM
    566191 6vnb:A (2.19) BS01 R6P 2.7.10.2 GO:0004672 ... O60674 33570945
    566192 6vnb:B (2.19) BS01 R6P 2.7.10.2 GO:0004672 ... O60674 33570945
    566193 6vnc:A (2.3) BS01 R6V 2.7.10.2 GO:0004672 ... O60674 33570945
    566194 6vnc:B (2.3) BS01 R6V 2.7.10.2 GO:0004672 ... O60674 33570945
    566195 6vnd:A (1.97) BS01 R4P 1.3.5.2 GO:0004151 ... Q02127 33082276 MOAD: ic50=17nM
    566196 6vnd:A (1.97) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 33082276
    566197 6vne:A (2.32) BS01 2TA 2.7.10.2 GO:0004672 ... O60674 33570945 BindingDB: IC50=3.0nM, Kd=1.1nM
    566198 6vne:B (2.32) BS01 2TA 2.7.10.2 GO:0004672 ... O60674 33570945 BindingDB: IC50=3.0nM, Kd=1.1nM
    566199 6vnf:A (2.06) BS01 R6S 2.7.10.2 GO:0004672 ... O60674 33570945
    566200 6vnf:B (2.06) BS01 R6S 2.7.10.2 GO:0004672 ... O60674 33570945

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).