SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    568001 6vyp:H (4.99) BS02 dna ? GO:0000786 ... P02281 32396821
    568002 6vyp:K (4.99) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 32396821
    568003 6vyp:M (4.99) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 32396821
    568004 6vyp:a (4.99) BS01 dna ? GO:0000786 ... P84233 32396821
    568005 6vyp:a (4.99) BS02 dna ? GO:0000786 ... P84233 32396821
    568006 6vyp:b (4.99) BS01 dna ? GO:0000786 ... P62799 32396821
    568007 6vyp:b (4.99) BS02 dna ? GO:0000786 ... P62799 32396821
    568008 6vyp:c (4.99) BS01 dna ? GO:0000786 ... P06897 32396821
    568009 6vyp:c (4.99) BS02 dna ? GO:0000786 ... P06897 32396821
    568010 6vyp:d (4.99) BS01 dna ? GO:0000786 ... P02281 32396821
    568011 6vyp:d (4.99) BS02 dna ? GO:0000786 ... P02281 32396821
    568012 6vyp:e (4.99) BS01 dna ? GO:0000786 ... P84233 32396821
    568013 6vyp:e (4.99) BS02 dna ? GO:0000786 ... P84233 32396821
    568014 6vyp:f (4.99) BS01 dna ? GO:0000786 ... P62799 32396821
    568015 6vyp:f (4.99) BS02 dna ? GO:0000786 ... P62799 32396821
    568016 6vyp:g (4.99) BS01 dna ? GO:0000786 ... P06897 32396821
    568017 6vyp:g (4.99) BS02 dna ? GO:0000786 ... P06897 32396821
    568018 6vyp:h (4.99) BS01 dna ? GO:0000786 ... P02281 32396821
    568019 6vyp:h (4.99) BS02 dna ? GO:0000786 ... P02281 32396821
    568020 6vyp:k (4.99) BS01 dna 1.14.99.66 GO:0005634 ... O60341 32396821
    568021 6vyp:k (4.99) BS02 FAD 1.14.99.66 GO:0005634 ... O60341 32396821
    568022 6vyp:m (4.99) BS01 dna 1.14.99.66 GO:0005634 ... O60341 32396821
    568023 6vyp:m (4.99) BS02 FAD 1.14.99.66 GO:0005634 ... O60341 32396821
    568024 6vyq:0 (3.7) BS01 rna ? GO:0002181 ... P0AG48 32820061
    568025 6vyq:1 (3.7) BS01 rna ? GO:0002181 ... P61175 32820061
    568026 6vyq:2 (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    568027 6vyq:3 (3.7) BS01 rna ? GO:0000027 ... P60624 32820061
    568028 6vyq:4 (3.7) BS01 rna ? GO:0000027 ... P68919 32820061
    568029 6vyq:9 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    568030 6vyq:AA (3.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568031 6vyq:AA (3.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568032 6vyq:AA (3.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568033 6vyq:AA (3.7) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568034 6vyq:AB (3.7) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    568035 6vyq:AE (3.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568036 6vyq:AE (3.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568037 6vyq:AE (3.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568038 6vyq:AE (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568039 6vyq:AE (3.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568040 6vyq:AE (3.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568041 6vyq:C (3.7) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    568042 6vyq:E (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    568043 6vyq:F (3.7) BS01 rna ? GO:0000028 ... P68679 32820061
    568044 6vyq:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    568045 6vyq:I (3.7) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    568046 6vyq:I (3.7) BS02 rna ? GO:0000028 ... P0A7V3 32820061
    568047 6vyq:J (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    568048 6vyq:K (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    568049 6vyq:K (3.7) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    568050 6vyq:L (3.7) BS01 rna ? GO:0002181 ... P02358 32820061
    568051 6vyq:M (3.7) BS01 rna ? GO:0000028 ... P02359 32820061
    568052 6vyq:M (3.7) BS02 rna ? GO:0000028 ... P02359 32820061
    568053 6vyq:N (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    568054 6vyq:O (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    568055 6vyq:P (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    568056 6vyq:Q (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    568057 6vyq:R (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    568058 6vyq:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 32820061
    568059 6vyq:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    568060 6vyq:T (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    568061 6vyq:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    568062 6vyq:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 32820061
    568063 6vyq:W (3.7) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    568064 6vyq:X (3.7) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    568065 6vyq:X (3.7) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    568066 6vyq:b (3.7) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    568067 6vyq:b (3.7) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    568068 6vyq:c (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    568069 6vyq:e (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    568070 6vyq:f (3.7) BS01 rna ? GO:0000027 ... P0AG51 32820061
    568071 6vyq:f (3.7) BS02 rna ? GO:0000027 ... P0AG51 32820061
    568072 6vyq:g (3.7) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    568073 6vyq:h (3.7) BS01 rna ? GO:0000027 ... P60422 32820061
    568074 6vyq:i (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    568075 6vyq:j (3.7) BS01 rna ? GO:0000027 ... P60438 32820061
    568076 6vyq:k (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    568077 6vyq:l (3.7) BS01 rna ? GO:0001070 ... P60723 32820061
    568078 6vyq:m (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    568079 6vyq:n (3.7) BS01 rna ? GO:0000027 ... P62399 32820061
    568080 6vyq:n (3.7) BS02 rna ? GO:0000027 ... P62399 32820061
    568081 6vyq:o (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    568082 6vyq:p (3.7) BS01 rna ? GO:0000027 ... P0AG55 32820061
    568083 6vyq:q (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    568084 6vyq:r (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    568085 6vyq:s (3.7) BS01 rna ? GO:0002181 ... P0AA10 32820061
    568086 6vyq:t (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    568087 6vyq:t (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    568088 6vyq:u (3.7) BS01 rna ? GO:0002181 ... P02413 32820061
    568089 6vyq:v (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    568090 6vyq:v (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    568091 6vyq:w (3.7) BS01 rna ? GO:0000027 ... P0AG44 32820061
    568092 6vyq:x (3.7) BS01 rna ? GO:0002181 ... P0C018 32820061
    568093 6vyq:x (3.7) BS02 rna ? GO:0002181 ... P0C018 32820061
    568094 6vyq:y (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    568095 6vyq:z (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    568096 6vyr:0 (3.8) BS01 rna ? GO:0002181 ... P0AG48 32820061
    568097 6vyr:1 (3.8) BS01 rna ? GO:0002181 ... P61175 32820061
    568098 6vyr:2 (3.8) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    568099 6vyr:3 (3.8) BS01 rna ? GO:0000027 ... P60624 32820061
    568100 6vyr:4 (3.8) BS01 rna ? GO:0000027 ... P68919 32820061
    568101 6vyr:9 (3.8) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    568102 6vyr:AA (3.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568103 6vyr:AA (3.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568104 6vyr:AA (3.8) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568105 6vyr:AA (3.8) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568106 6vyr:AB (3.8) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    568107 6vyr:AE (3.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568108 6vyr:AE (3.8) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568109 6vyr:AE (3.8) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568110 6vyr:AE (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568111 6vyr:AE (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568112 6vyr:AE (3.8) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568113 6vyr:C (3.8) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    568114 6vyr:E (3.8) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    568115 6vyr:F (3.8) BS01 rna ? GO:0000028 ... P68679 32820061
    568116 6vyr:G (3.8) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    568117 6vyr:I (3.8) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    568118 6vyr:J (3.8) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    568119 6vyr:K (3.8) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    568120 6vyr:K (3.8) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    568121 6vyr:L (3.8) BS01 rna ? GO:0002181 ... P02358 32820061
    568122 6vyr:M (3.8) BS01 rna ? GO:0000028 ... P02359 32820061
    568123 6vyr:M (3.8) BS02 rna ? GO:0000028 ... P02359 32820061
    568124 6vyr:N (3.8) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    568125 6vyr:O (3.8) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    568126 6vyr:P (3.8) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    568127 6vyr:Q (3.8) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    568128 6vyr:R (3.8) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    568129 6vyr:S (3.8) BS01 rna ? GO:0000028 ... P0AG59 32820061
    568130 6vyr:T (3.8) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    568131 6vyr:T (3.8) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    568132 6vyr:U (3.8) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    568133 6vyr:V (3.8) BS01 rna ? GO:0000028 ... P0AG63 32820061
    568134 6vyr:W (3.8) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    568135 6vyr:X (3.8) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    568136 6vyr:X (3.8) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    568137 6vyr:b (3.8) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    568138 6vyr:b (3.8) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    568139 6vyr:c (3.8) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    568140 6vyr:e (3.8) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    568141 6vyr:f (3.8) BS01 rna ? GO:0000027 ... P0AG51 32820061
    568142 6vyr:f (3.8) BS02 rna ? GO:0000027 ... P0AG51 32820061
    568143 6vyr:g (3.8) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    568144 6vyr:h (3.8) BS01 rna ? GO:0000027 ... P60422 32820061
    568145 6vyr:i (3.8) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    568146 6vyr:j (3.8) BS01 rna ? GO:0000027 ... P60438 32820061
    568147 6vyr:k (3.8) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    568148 6vyr:l (3.8) BS01 rna ? GO:0001070 ... P60723 32820061
    568149 6vyr:m (3.8) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    568150 6vyr:n (3.8) BS01 rna ? GO:0000027 ... P62399 32820061
    568151 6vyr:n (3.8) BS02 rna ? GO:0000027 ... P62399 32820061
    568152 6vyr:o (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    568153 6vyr:p (3.8) BS01 rna ? GO:0000027 ... P0AG55 32820061
    568154 6vyr:q (3.8) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    568155 6vyr:r (3.8) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    568156 6vyr:s (3.8) BS01 rna ? GO:0002181 ... P0AA10 32820061
    568157 6vyr:t (3.8) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    568158 6vyr:t (3.8) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    568159 6vyr:u (3.8) BS01 rna ? GO:0002181 ... P02413 32820061
    568160 6vyr:v (3.8) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    568161 6vyr:v (3.8) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    568162 6vyr:w (3.8) BS01 rna ? GO:0000027 ... P0AG44 32820061
    568163 6vyr:x (3.8) BS01 rna ? GO:0002181 ... P0C018 32820061
    568164 6vyr:x (3.8) BS02 rna ? GO:0002181 ... P0C018 32820061
    568165 6vyr:y (3.8) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    568166 6vyr:z (3.8) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    568167 6vys:0 (3.7) BS01 rna ? GO:0002181 ... P0AG48 32820061
    568168 6vys:1 (3.7) BS01 rna ? GO:0002181 ... P61175 32820061
    568169 6vys:2 (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    568170 6vys:3 (3.7) BS01 rna ? GO:0000027 ... P60624 32820061
    568171 6vys:4 (3.7) BS01 rna ? GO:0000027 ... P68919 32820061
    568172 6vys:9 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    568173 6vys:AA (3.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568174 6vys:AA (3.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568175 6vys:AA (3.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568176 6vys:AA (3.7) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568177 6vys:AB (3.7) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    568178 6vys:AE (3.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568179 6vys:AE (3.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568180 6vys:AE (3.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568181 6vys:AE (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568182 6vys:AE (3.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568183 6vys:AE (3.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568184 6vys:C (3.7) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    568185 6vys:E (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    568186 6vys:F (3.7) BS01 rna ? GO:0000028 ... P68679 32820061
    568187 6vys:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    568188 6vys:I (3.7) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    568189 6vys:I (3.7) BS02 rna ? GO:0000028 ... P0A7V3 32820061
    568190 6vys:J (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    568191 6vys:K (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    568192 6vys:K (3.7) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    568193 6vys:L (3.7) BS01 rna ? GO:0002181 ... P02358 32820061
    568194 6vys:M (3.7) BS01 rna ? GO:0000028 ... P02359 32820061
    568195 6vys:M (3.7) BS02 rna ? GO:0000028 ... P02359 32820061
    568196 6vys:N (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    568197 6vys:O (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    568198 6vys:P (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    568199 6vys:Q (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    568200 6vys:R (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32820061

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).