SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    568801 6vz4:D (3.9) BS01 dna ? GO:0000786 ... P02281 33288924
    568802 6vz4:D (3.9) BS02 dna ? GO:0000786 ... P02281 33288924
    568803 6vz4:E (3.9) BS01 dna ? GO:0000786 ... Q92133 33288924
    568804 6vz4:E (3.9) BS02 dna ? GO:0000786 ... Q92133 33288924
    568805 6vz4:F (3.9) BS01 dna ? GO:0000786 ... P62799 33288924
    568806 6vz4:F (3.9) BS02 dna ? GO:0000786 ... P62799 33288924
    568807 6vz4:G (3.9) BS01 dna ? GO:0000786 ... P06897 33288924
    568808 6vz4:G (3.9) BS02 dna ? GO:0000786 ... P06897 33288924
    568809 6vz4:H (3.9) BS01 dna ? GO:0000786 ... P02281 33288924
    568810 6vz4:H (3.9) BS02 dna ? GO:0000786 ... P02281 33288924
    568811 6vz4:K (3.9) BS01 dna 3.6.4.12 GO:0005524 ... P32597 33288924
    568812 6vz4:K (3.9) BS02 dna 3.6.4.12 GO:0005524 ... P32597 33288924
    568813 6vz4:K (3.9) BS03 MG 3.6.4.12 GO:0005524 ... P32597 33288924
    568814 6vz4:K (3.9) BS04 ADP 3.6.4.12 GO:0005524 ... P32597 33288924
    568815 6vz4:L (3.9) BS01 ATP ? GO:0000785 ... Q12406 33288924
    568816 6vz5:0 (8.9) BS01 rna ? GO:0002181 ... P0AG48 32820061
    568817 6vz5:1 (8.9) BS01 rna ? GO:0002181 ... P61175 32820061
    568818 6vz5:2 (8.9) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    568819 6vz5:3 (8.9) BS01 rna ? GO:0000027 ... P60624 32820061
    568820 6vz5:4 (8.9) BS01 rna ? GO:0000027 ... P68919 32820061
    568821 6vz5:AA (8.9) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568822 6vz5:AA (8.9) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568823 6vz5:AA (8.9) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568824 6vz5:AB (8.9) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    568825 6vz5:AE (8.9) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568826 6vz5:AE (8.9) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568827 6vz5:AE (8.9) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568828 6vz5:AE (8.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568829 6vz5:AE (8.9) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568830 6vz5:AE (8.9) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568831 6vz5:C (8.9) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    568832 6vz5:E (8.9) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    568833 6vz5:F (8.9) BS01 rna ? GO:0000028 ... P68679 32820061
    568834 6vz5:G (8.9) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    568835 6vz5:I (8.9) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    568836 6vz5:J (8.9) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    568837 6vz5:K (8.9) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    568838 6vz5:L (8.9) BS01 rna ? GO:0002181 ... P02358 32820061
    568839 6vz5:M (8.9) BS01 rna ? GO:0000028 ... P02359 32820061
    568840 6vz5:M (8.9) BS02 rna ? GO:0000028 ... P02359 32820061
    568841 6vz5:N (8.9) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    568842 6vz5:O (8.9) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    568843 6vz5:P (8.9) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    568844 6vz5:Q (8.9) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    568845 6vz5:R (8.9) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    568846 6vz5:S (8.9) BS01 rna ? GO:0000028 ... P0AG59 32820061
    568847 6vz5:T (8.9) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    568848 6vz5:T (8.9) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    568849 6vz5:U (8.9) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    568850 6vz5:V (8.9) BS01 rna ? GO:0000028 ... P0AG63 32820061
    568851 6vz5:W (8.9) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    568852 6vz5:X (8.9) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    568853 6vz5:X (8.9) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    568854 6vz5:b (8.9) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    568855 6vz5:b (8.9) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    568856 6vz5:c (8.9) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    568857 6vz5:e (8.9) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    568858 6vz5:f (8.9) BS01 rna ? GO:0000027 ... P0AG51 32820061
    568859 6vz5:f (8.9) BS02 rna ? GO:0000027 ... P0AG51 32820061
    568860 6vz5:g (8.9) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    568861 6vz5:h (8.9) BS01 rna ? GO:0000027 ... P60422 32820061
    568862 6vz5:i (8.9) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    568863 6vz5:j (8.9) BS01 rna ? GO:0000027 ... P60438 32820061
    568864 6vz5:k (8.9) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    568865 6vz5:l (8.9) BS01 rna ? GO:0001070 ... P60723 32820061
    568866 6vz5:m (8.9) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    568867 6vz5:n (8.9) BS01 rna ? GO:0000027 ... P62399 32820061
    568868 6vz5:n (8.9) BS02 rna ? GO:0000027 ... P62399 32820061
    568869 6vz5:o (8.9) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    568870 6vz5:p (8.9) BS01 rna ? GO:0000027 ... P0AG55 32820061
    568871 6vz5:q (8.9) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    568872 6vz5:r (8.9) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    568873 6vz5:s (8.9) BS01 rna ? GO:0002181 ... P0AA10 32820061
    568874 6vz5:t (8.9) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    568875 6vz5:t (8.9) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    568876 6vz5:u (8.9) BS01 rna ? GO:0002181 ... P02413 32820061
    568877 6vz5:v (8.9) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    568878 6vz5:v (8.9) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    568879 6vz5:w (8.9) BS01 rna ? GO:0000027 ... P0AG44 32820061
    568880 6vz5:x (8.9) BS01 rna ? GO:0002181 ... P0C018 32820061
    568881 6vz5:x (8.9) BS02 rna ? GO:0002181 ... P0C018 32820061
    568882 6vz5:y (8.9) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    568883 6vz5:z (8.9) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    568884 6vz6:A (2.1) BS01 HEM ? GO:0046872 ... Q12W16 N/A
    568885 6vz7:0 (7.0) BS01 rna ? GO:0002181 ... P0AG48 32820061
    568886 6vz7:1 (7.0) BS01 rna ? GO:0002181 ... P61175 32820061
    568887 6vz7:2 (7.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    568888 6vz7:3 (7.0) BS01 rna ? GO:0000027 ... P60624 32820061
    568889 6vz7:4 (7.0) BS01 rna ? GO:0000027 ... P68919 32820061
    568890 6vz7:AA (7.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568891 6vz7:AA (7.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568892 6vz7:AA (7.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    568893 6vz7:AB (7.0) BS01 dna ? GO:0006354 ... P0AFG0 32820061
    568894 6vz7:AE (7.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568895 6vz7:AE (7.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568896 6vz7:AE (7.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568897 6vz7:AE (7.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568898 6vz7:AE (7.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568899 6vz7:AE (7.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    568900 6vz7:C (7.0) BS01 rna ? GO:0003735 ... P0A7T7 32820061
    568901 6vz7:E (7.0) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    568902 6vz7:F (7.0) BS01 rna ? GO:0000028 ... P68679 32820061
    568903 6vz7:G (7.0) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    568904 6vz7:I (7.0) BS01 rna ? GO:0003676 ... P0A7V3 32820061
    568905 6vz7:J (7.0) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    568906 6vz7:K (7.0) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    568907 6vz7:L (7.0) BS01 rna ? GO:0003735 ... P02358 32820061
    568908 6vz7:M (7.0) BS01 rna ? GO:0003723 ... P02359 32820061
    568909 6vz7:M (7.0) BS02 rna ? GO:0003723 ... P02359 32820061
    568910 6vz7:N (7.0) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    568911 6vz7:O (7.0) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    568912 6vz7:P (7.0) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    568913 6vz7:Q (7.0) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    568914 6vz7:R (7.0) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    568915 6vz7:S (7.0) BS01 rna ? GO:0000028 ... P0AG59 32820061
    568916 6vz7:T (7.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    568917 6vz7:T (7.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    568918 6vz7:U (7.0) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    568919 6vz7:V (7.0) BS01 rna ? GO:0000028 ... P0AG63 32820061
    568920 6vz7:W (7.0) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    568921 6vz7:X (7.0) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    568922 6vz7:X (7.0) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    568923 6vz7:b (7.0) BS01 rna ? GO:0003735 ... P0A7L8 32820061
    568924 6vz7:b (7.0) BS02 rna ? GO:0003735 ... P0A7L8 32820061
    568925 6vz7:c (7.0) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    568926 6vz7:e (7.0) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    568927 6vz7:f (7.0) BS01 rna ? GO:0000027 ... P0AG51 32820061
    568928 6vz7:f (7.0) BS02 rna ? GO:0000027 ... P0AG51 32820061
    568929 6vz7:g (7.0) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    568930 6vz7:h (7.0) BS01 rna ? GO:0000027 ... P60422 32820061
    568931 6vz7:i (7.0) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    568932 6vz7:j (7.0) BS01 rna ? GO:0000027 ... P60438 32820061
    568933 6vz7:k (7.0) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    568934 6vz7:l (7.0) BS01 rna ? GO:0001070 ... P60723 32820061
    568935 6vz7:m (7.0) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    568936 6vz7:n (7.0) BS01 rna ? GO:0000027 ... P62399 32820061
    568937 6vz7:n (7.0) BS02 rna ? GO:0000027 ... P62399 32820061
    568938 6vz7:o (7.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    568939 6vz7:p (7.0) BS01 rna ? GO:0000027 ... P0AG55 32820061
    568940 6vz7:q (7.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    568941 6vz7:r (7.0) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    568942 6vz7:s (7.0) BS01 rna ? GO:0002181 ... P0AA10 32820061
    568943 6vz7:t (7.0) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    568944 6vz7:t (7.0) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    568945 6vz7:u (7.0) BS01 rna ? GO:0002181 ... P02413 32820061
    568946 6vz7:v (7.0) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    568947 6vz7:v (7.0) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    568948 6vz7:w (7.0) BS01 rna ? GO:0000027 ... P0AG44 32820061
    568949 6vz7:x (7.0) BS01 rna ? GO:0002181 ... P0C018 32820061
    568950 6vz7:x (7.0) BS02 rna ? GO:0002181 ... P0C018 32820061
    568951 6vz7:y (7.0) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    568952 6vz7:z (7.0) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    568953 6vz8:D (3.45) BS01 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    568954 6vz8:D (3.45) BS02 FAD 2.2.1.6 GO:0000287 ... P17597 32640464
    568955 6vz8:D (3.45) BS03 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568956 6vz8:D (3.45) BS04 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568957 6vz8:E (3.45) BS01 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568958 6vz8:E (3.45) BS02 FAD 2.2.1.6 GO:0000287 ... P17597 32640464
    568959 6vz8:E (3.45) BS03 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568960 6vz8:F (3.45) BS01 VAL ? GO:0001666 ... Q93YZ7 32640464
    568961 6vz8:F (3.45) BS02 VAL ? GO:0001666 ... Q93YZ7 32640464
    568962 6vz8:G (3.45) BS01 VAL ? GO:0001666 ... Q93YZ7 32640464
    568963 6vz8:G (3.45) BS02 VAL ? GO:0001666 ... Q93YZ7 32640464
    568964 6vz8:H (3.45) BS01 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    568965 6vz8:H (3.45) BS02 FAD 2.2.1.6 GO:0000287 ... P17597 32640464
    568966 6vz8:H (3.45) BS03 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568967 6vz8:H (3.45) BS04 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568968 6vz8:I (3.45) BS01 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568969 6vz8:I (3.45) BS02 FAD 2.2.1.6 GO:0000287 ... P17597 32640464
    568970 6vz8:I (3.45) BS03 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568971 6vz8:J (3.45) BS01 VAL ? GO:0001666 ... Q93YZ7 32640464
    568972 6vz8:J (3.45) BS02 VAL ? GO:0001666 ... Q93YZ7 32640464
    568973 6vz8:K (3.45) BS01 VAL ? GO:0001666 ... Q93YZ7 32640464
    568974 6vz8:K (3.45) BS02 VAL ? GO:0001666 ... Q93YZ7 32640464
    568975 6vz8:L (3.45) BS01 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    568976 6vz8:L (3.45) BS02 FAD 2.2.1.6 GO:0000287 ... P17597 32640464
    568977 6vz8:L (3.45) BS03 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568978 6vz8:L (3.45) BS04 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568979 6vz8:M (3.45) BS01 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568980 6vz8:M (3.45) BS02 FAD 2.2.1.6 GO:0000287 ... P17597 32640464
    568981 6vz8:M (3.45) BS03 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568982 6vz8:N (3.45) BS01 VAL ? GO:0001666 ... Q93YZ7 32640464
    568983 6vz8:N (3.45) BS02 VAL ? GO:0001666 ... Q93YZ7 32640464
    568984 6vz8:O (3.45) BS01 VAL ? GO:0001666 ... Q93YZ7 32640464
    568985 6vz8:O (3.45) BS02 VAL ? GO:0001666 ... Q93YZ7 32640464
    568986 6vz8:P (3.45) BS01 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    568987 6vz8:P (3.45) BS02 FAD 2.2.1.6 GO:0000287 ... P17597 32640464
    568988 6vz8:P (3.45) BS03 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568989 6vz8:P (3.45) BS04 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568990 6vz8:Q (3.45) BS01 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568991 6vz8:Q (3.45) BS02 FAD 2.2.1.6 GO:0000287 ... P17597 32640464
    568992 6vz8:Q (3.45) BS03 TPP 2.2.1.6 GO:0000287 ... P17597 32640464
    568993 6vz8:R (3.45) BS01 VAL ? GO:0001666 ... Q93YZ7 32640464
    568994 6vz8:R (3.45) BS02 VAL ? GO:0001666 ... Q93YZ7 32640464
    568995 6vz8:S (3.45) BS01 VAL ? GO:0001666 ... Q93YZ7 32640464
    568996 6vz8:S (3.45) BS02 VAL ? GO:0001666 ... Q93YZ7 32640464
    568997 6vz9:A (1.52) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 32159324
    568998 6vz9:A (1.52) BS02 NAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 32159324
    568999 6vz9:A (1.52) BS03 T2C 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 32159324
    569000 6vz9:B (1.52) BS01 FAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 32159324

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).