SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    569001 6vz9:B (1.52) BS02 NAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 32159324
    569002 6vz9:B (1.52) BS03 T2C 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 32159324
    569003 6vza:A (1.47) BS01 CA N/A GO:0004497 ... N/A 33288748
    569004 6vza:A (1.47) BS02 HEM N/A GO:0004497 ... N/A 33288748
    569005 6vza:A (1.47) BS03 QRP N/A GO:0004497 ... N/A 33288748 MOAD: Kd=25.6uM
    569006 6vza:A (1.47) BS04 QRP N/A GO:0004497 ... N/A 33288748 MOAD: Kd=25.6uM
    569007 6vzb:A (1.68) BS01 QRP N/A GO:0004497 ... N/A 33288748 MOAD: Kd=4.81uM
    569008 6vzb:A (1.68) BS02 QRP N/A GO:0004497 ... N/A 33288748 MOAD: Kd=4.81uM
    569009 6vzb:A (1.68) BS03 HEM N/A GO:0004497 ... N/A 33288748
    569010 6vzd:A (1.88) BS01 RXY ? GO:0006629 ... P50405 33242393
    569011 6vzd:B (1.88) BS01 RXY ? GO:0006629 ... P50405 33242393
    569012 6vzd:C (1.88) BS01 RXY ? GO:0006629 ... P50405 33242393
    569013 6vzd:C (1.88) BS02 RXY ? GO:0006629 ... P50405 33242393
    569014 6vzd:E (1.88) BS01 RXY ? GO:0006629 ... P50405 33242393
    569015 6vzd:E (1.88) BS02 RXY ? GO:0006629 ... P50405 33242393
    569016 6vzd:E (1.88) BS03 RXY ? GO:0006629 ... P50405 33242393
    569017 6vzg:L (4.2) BS01 ATP ? GO:0000785 ... Q12406 33288924
    569018 6vzh:B (2.55) BS01 RYA 2.7.11.1 GO:0000785 ... Q99986 N/A
    569019 6vzh:D (2.55) BS01 RYA 2.7.11.1 GO:0000785 ... Q99986 N/A
    569020 6vzi:D (2.716) BS01 MAN N/A N/A N/A 32295908
    569021 6vzi:H (2.716) BS01 MAN N/A N/A N/A 32295908
    569022 6vzi:L (2.716) BS01 MAN N/A N/A N/A 32295908
    569023 6vzi:L (2.716) BS02 MAN N/A N/A N/A 32295908
    569024 6vzj:0 (4.1) BS01 rna ? GO:0002181 ... P0AG48 32820061
    569025 6vzj:1 (4.1) BS01 rna ? GO:0002181 ... P61175 32820061
    569026 6vzj:2 (4.1) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    569027 6vzj:3 (4.1) BS01 rna ? GO:0000027 ... P60624 32820061
    569028 6vzj:4 (4.1) BS01 rna ? GO:0000027 ... P68919 32820061
    569029 6vzj:9 (4.1) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    569030 6vzj:AA (4.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    569031 6vzj:AA (4.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    569032 6vzj:AA (4.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    569033 6vzj:AA (4.1) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    569034 6vzj:AE (4.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    569035 6vzj:AE (4.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    569036 6vzj:AE (4.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    569037 6vzj:AE (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    569038 6vzj:AE (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    569039 6vzj:AE (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    569040 6vzj:C (4.1) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    569041 6vzj:E (4.1) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    569042 6vzj:F (4.1) BS01 rna ? GO:0000028 ... P68679 32820061
    569043 6vzj:G (4.1) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    569044 6vzj:I (4.1) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    569045 6vzj:I (4.1) BS02 rna ? GO:0000028 ... P0A7V3 32820061
    569046 6vzj:J (4.1) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    569047 6vzj:K (4.1) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    569048 6vzj:K (4.1) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    569049 6vzj:L (4.1) BS01 rna ? GO:0002181 ... P02358 32820061
    569050 6vzj:M (4.1) BS01 rna ? GO:0003723 ... P02359 32820061
    569051 6vzj:M (4.1) BS02 rna ? GO:0003723 ... P02359 32820061
    569052 6vzj:N (4.1) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    569053 6vzj:O (4.1) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    569054 6vzj:P (4.1) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    569055 6vzj:Q (4.1) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    569056 6vzj:R (4.1) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    569057 6vzj:S (4.1) BS01 rna ? GO:0000028 ... P0AG59 32820061
    569058 6vzj:T (4.1) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    569059 6vzj:T (4.1) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    569060 6vzj:U (4.1) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    569061 6vzj:V (4.1) BS01 rna ? GO:0000028 ... P0AG63 32820061
    569062 6vzj:W (4.1) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    569063 6vzj:X (4.1) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    569064 6vzj:X (4.1) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    569065 6vzj:b (4.1) BS01 rna ? GO:0003735 ... P0A7L8 32820061
    569066 6vzj:b (4.1) BS02 rna ? GO:0003735 ... P0A7L8 32820061
    569067 6vzj:c (4.1) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    569068 6vzj:e (4.1) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    569069 6vzj:f (4.1) BS01 rna ? GO:0000027 ... P0AG51 32820061
    569070 6vzj:f (4.1) BS02 rna ? GO:0000027 ... P0AG51 32820061
    569071 6vzj:g (4.1) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    569072 6vzj:h (4.1) BS01 rna ? GO:0000027 ... P60422 32820061
    569073 6vzj:i (4.1) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    569074 6vzj:j (4.1) BS01 rna ? GO:0000027 ... P60438 32820061
    569075 6vzj:k (4.1) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    569076 6vzj:l (4.1) BS01 rna ? GO:0001070 ... P60723 32820061
    569077 6vzj:m (4.1) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    569078 6vzj:n (4.1) BS01 rna ? GO:0000027 ... P62399 32820061
    569079 6vzj:n (4.1) BS02 rna ? GO:0000027 ... P62399 32820061
    569080 6vzj:o (4.1) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    569081 6vzj:p (4.1) BS01 rna ? GO:0000027 ... P0AG55 32820061
    569082 6vzj:q (4.1) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    569083 6vzj:r (4.1) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    569084 6vzj:s (4.1) BS01 rna ? GO:0002181 ... P0AA10 32820061
    569085 6vzj:t (4.1) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    569086 6vzj:t (4.1) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    569087 6vzj:u (4.1) BS01 rna ? GO:0002181 ... P02413 32820061
    569088 6vzj:v (4.1) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    569089 6vzj:v (4.1) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    569090 6vzj:w (4.1) BS01 rna ? GO:0000027 ... P0AG44 32820061
    569091 6vzj:x (4.1) BS01 rna ? GO:0002181 ... P0C018 32820061
    569092 6vzj:x (4.1) BS02 rna ? GO:0002181 ... P0C018 32820061
    569093 6vzj:y (4.1) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    569094 6vzj:z (4.1) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    569095 6vzl:A (2.07) BS01 EDK ? GO:0003677 ... P37231 33713599 BindingDB: EC50=130nM, Ki=0.049700nM
    569096 6vzl:B (2.07) BS01 EDK ? GO:0003677 ... P37231 33713599 BindingDB: EC50=130nM, Ki=0.049700nM
    569097 6vzm:A (2.4) BS01 GEV ? GO:0003677 ... P37231 33713599
    569098 6vzm:B (2.4) BS01 GEV ? GO:0003677 ... P37231 33713599
    569099 6vzq:A (3.08) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569100 6vzq:A (3.08) BS02 RZY 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569101 6vzq:A (3.08) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569102 6vzq:B (3.08) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569103 6vzq:B (3.08) BS02 RZP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569104 6vzq:B (3.08) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569105 6vzq:C (3.08) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569106 6vzq:C (3.08) BS02 RZP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569107 6vzq:C (3.08) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569108 6vzq:D (3.08) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569109 6vzq:D (3.08) BS02 RZP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569110 6vzq:D (3.08) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569111 6vzq:D (3.08) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569112 6vzr:A (2.6) BS01 2TI 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569113 6vzr:A (2.6) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569114 6vzr:A (2.6) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569115 6vzr:A (2.6) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569116 6vzr:B (2.6) BS01 peptide 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569117 6vzr:B (2.6) BS02 2TI 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569118 6vzr:B (2.6) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569119 6vzr:B (2.6) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569120 6vzr:B (2.6) BS05 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569121 6vzr:C (2.6) BS01 2TI 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569122 6vzr:C (2.6) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569123 6vzr:C (2.6) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569124 6vzr:C (2.6) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569125 6vzr:D (2.6) BS01 2TI 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569126 6vzr:D (2.6) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569127 6vzr:D (2.6) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569128 6vzr:D (2.6) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569129 6vzs:A (2.66) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569130 6vzs:A (2.66) BS02 S3A 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569131 6vzs:A (2.66) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569132 6vzs:A (2.66) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569133 6vzs:B (2.66) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569134 6vzs:B (2.66) BS02 S3A 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569135 6vzs:B (2.66) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569136 6vzs:B (2.66) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569137 6vzs:C (2.66) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569138 6vzs:C (2.66) BS02 S3A 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569139 6vzs:C (2.66) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569140 6vzs:C (2.66) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569141 6vzs:D (2.66) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569142 6vzs:D (2.66) BS02 S3A 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569143 6vzs:D (2.66) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569144 6vzt:A (2.18) BS01 ATP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569145 6vzt:B (2.18) BS01 ATP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569146 6vzu:A (1.98) BS01 peptide 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569147 6vzu:A (1.98) BS02 RZP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569148 6vzu:A (1.98) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569149 6vzu:A (1.98) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569150 6vzu:A (1.98) BS05 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569151 6vzu:B (1.98) BS01 RZP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569152 6vzu:B (1.98) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569153 6vzu:B (1.98) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569154 6vzu:B (1.98) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569155 6vzu:C (1.98) BS01 RZV 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569156 6vzu:C (1.98) BS02 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569157 6vzu:C (1.98) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569158 6vzu:C (1.98) BS04 RZP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569159 6vzu:C (1.98) BS05 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569160 6vzu:D (1.98) BS01 peptide 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569161 6vzu:D (1.98) BS02 RZP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569162 6vzu:D (1.98) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569163 6vzu:D (1.98) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569164 6vzu:D (1.98) BS05 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569165 6vzv:A (2.33) BS01 peptide 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569166 6vzv:A (2.33) BS02 S3A 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569167 6vzv:A (2.33) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569168 6vzv:A (2.33) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569169 6vzv:A (2.33) BS05 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569170 6vzv:A (2.33) BS06 S37 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569171 6vzv:B (2.33) BS01 S3A 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569172 6vzv:B (2.33) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569173 6vzv:B (2.33) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569174 6vzv:B (2.33) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569175 6vzv:C (2.33) BS01 S3A 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569176 6vzv:C (2.33) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569177 6vzv:C (2.33) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569178 6vzv:C (2.33) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569179 6vzv:D (2.33) BS01 peptide 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569180 6vzv:D (2.33) BS02 S3A 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569181 6vzv:D (2.33) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569182 6vzv:D (2.33) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569183 6vzv:D (2.33) BS05 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569184 6vzv:D (2.33) BS06 S37 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569185 6vzw:A (2.5) BS01 2TI 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569186 6vzw:A (2.5) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569187 6vzw:A (2.5) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569188 6vzw:A (2.5) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569189 6vzw:B (2.5) BS01 2TI 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569190 6vzw:B (2.5) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569191 6vzw:B (2.5) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569192 6vzw:B (2.5) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569193 6vzw:C (2.5) BS01 2TI 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569194 6vzw:C (2.5) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569195 6vzw:C (2.5) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569196 6vzw:C (2.5) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569197 6vzw:D (2.5) BS01 2TI 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569198 6vzw:D (2.5) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569199 6vzw:D (2.5) BS03 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    569200 6vzw:D (2.5) BS04 MG 6.3.2.- GO:0036211 ... A4Q9E8 32747782

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).