SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    571001 6w7i:A (2.1) BS02 CA 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    571002 6w7i:A (2.1) BS03 IPR 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    571003 6w7i:A (2.1) BS04 476 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    571004 6w7i:B (2.1) BS01 CA 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    571005 6w7i:B (2.1) BS02 CA 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    571006 6w7i:B (2.1) BS03 IPR 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    571007 6w7i:B (2.1) BS04 476 2.5.1.1
    2.5.1.10
    GO:0004161 ... Q4QBL1 32584028
    571008 6w7j:A (1.489) BS01 TGM 3.1.4.- GO:0005634 ... Q9NUW8 N/A
    571009 6w7j:B (1.489) BS01 TGM 3.1.4.- GO:0005634 ... Q9NUW8 N/A
    571010 6w7k:A (1.7) BS01 TG7 3.1.4.- GO:0005634 ... Q9NUW8 N/A
    571011 6w7k:B (1.7) BS01 TG7 3.1.4.- GO:0005634 ... Q9NUW8 N/A
    571012 6w7l:A (1.856) BS01 TGV 3.1.4.- GO:0005634 ... Q9NUW8 N/A
    571013 6w7l:B (1.856) BS01 TGV 3.1.4.- GO:0005634 ... Q9NUW8 N/A
    571014 6w7m:B (3.8) BS01 rna ? GO:0000028 ... P0A7V0 32989043
    571015 6w7m:C (3.8) BS01 rna ? GO:0000028 ... P0A7V3 32989043
    571016 6w7m:D (3.8) BS01 rna ? GO:0000028 ... P0A7V8 32989043
    571017 6w7m:E (3.8) BS01 rna ? GO:0000028 ... P0A7W1 32989043
    571018 6w7m:F (3.8) BS01 rna ? GO:0002181 ... P02358 32989043
    571019 6w7m:G (3.8) BS01 rna ? GO:0000028 ... P02359 32989043
    571020 6w7m:H (3.8) BS01 rna ? GO:0000028 ... P0A7W7 32989043
    571021 6w7m:I (3.8) BS01 rna ? GO:0000049 ... P0A7X3 32989043
    571022 6w7m:J (3.8) BS01 rna ? GO:0000049 ... P0A7R5 32989043
    571023 6w7m:K (3.8) BS01 rna ? GO:0002181 ... P0A7R9 32989043
    571024 6w7m:L (3.8) BS01 rna ? GO:0000049 ... P0A7S3 32989043
    571025 6w7m:M (3.8) BS01 rna ? GO:0000049 ... P0A7S9 32989043
    571026 6w7m:N (3.8) BS01 rna ? GO:0000028 ... P0AG59 32989043
    571027 6w7m:O (3.8) BS01 rna ? GO:0000028 ... P0ADZ4 32989043
    571028 6w7m:P (3.8) BS01 rna ? GO:0000028 ... P0A7T3 32989043
    571029 6w7m:Q (3.8) BS01 rna ? GO:0000028 ... P0AG63 32989043
    571030 6w7m:R (3.8) BS01 rna ? GO:0002181 ... P0A7T7 32989043
    571031 6w7m:S (3.8) BS01 rna ? GO:0000028 ... P0A7U3 32989043
    571032 6w7m:T (3.8) BS01 rna ? GO:0000028 ... P0A7U7 32989043
    571033 6w7n:C (3.4) BS01 rna ? GO:0000028 ... P0A7V3 32989043
    571034 6w7n:D (3.4) BS01 rna ? GO:0000028 ... P0A7V8 32989043
    571035 6w7n:E (3.4) BS01 rna ? GO:0000028 ... P0A7W1 32989043
    571036 6w7n:H (3.4) BS01 rna ? GO:0000028 ... P0A7W7 32989043
    571037 6w7n:I (3.4) BS01 rna ? GO:0000049 ... P0A7X3 32989043
    571038 6w7n:J (3.4) BS01 rna ? GO:0000049 ... P0A7R5 32989043
    571039 6w7n:L (3.4) BS01 rna ? GO:0000049 ... P0A7S3 32989043
    571040 6w7n:M (3.4) BS01 rna ? GO:0000049 ... P0A7S9 32989043
    571041 6w7n:N (3.4) BS01 rna ? GO:0000028 ... P0AG59 32989043
    571042 6w7n:O (3.4) BS01 rna ? GO:0000028 ... P0ADZ4 32989043
    571043 6w7n:P (3.4) BS01 rna ? GO:0000028 ... P0A7T3 32989043
    571044 6w7n:Q (3.4) BS01 rna ? GO:0000028 ... P0AG63 32989043
    571045 6w7n:S (3.4) BS01 rna ? GO:0000028 ... P0A7U3 32989043
    571046 6w7n:T (3.4) BS01 rna ? GO:0000028 ... P0A7U7 32989043
    571047 6w7o:A (2.17) BS01 TL7 2.7.10.2 GO:0004672 ... Q06187 N/A
    571048 6w7o:B (2.17) BS01 TL7 2.7.10.2 GO:0004672 ... Q06187 N/A
    571049 6w7o:C (2.17) BS01 TL7 2.3.2.27 N/A Q13490 N/A
    571050 6w7o:C (2.17) BS02 ZN 2.3.2.27 N/A Q13490 N/A
    571051 6w7o:D (2.17) BS01 TL7 2.3.2.27 N/A Q13490 N/A
    571052 6w7o:D (2.17) BS02 ZN 2.3.2.27 N/A Q13490 N/A
    571053 6w7p:A (1.6) BS01 NA 3.2.1.17 GO:0003796 ... P00698 32352028
    571054 6w7v:A (1.7) BS01 ATP 3.6.4.- GO:0000287 ... P68135 33938740
    571055 6w7v:A (1.7) BS02 LAB 3.6.4.- GO:0000287 ... P68135 33938740 BindingDB: IC50=8470nM
    571056 6w7v:A (1.7) BS03 TFJ 3.6.4.- GO:0000287 ... P68135 33938740
    571057 6w7w:C (3.9) BS01 rna ? GO:0000028 ... P0A7V8 32989043
    571058 6w7w:D (3.9) BS01 rna ? GO:0000028 ... P0A7W1 32989043
    571059 6w7w:E (3.9) BS01 rna ? GO:0002181 ... P02358 32989043
    571060 6w7w:G (3.9) BS01 rna ? GO:0000028 ... P0A7W7 32989043
    571061 6w7w:K (3.9) BS01 rna ? GO:0000049 ... P0A7S3 32989043
    571062 6w7w:N (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 32989043
    571063 6w7w:O (3.9) BS01 rna ? GO:0000028 ... P0A7T3 32989043
    571064 6w7w:P (3.9) BS01 rna ? GO:0000028 ... P0AG63 32989043
    571065 6w7w:S (3.9) BS01 rna ? GO:0000028 ... P0A7U7 32989043
    571066 6w7z:B (1.8) BS01 ZN 2.3.2.27 N/A Q9NVW2 32416094
    571067 6w7z:B (1.8) BS02 ZN 2.3.2.27 N/A Q9NVW2 32416094
    571068 6w80:A (1.4) BS01 PLP 5.4.3.8 GO:0005737 ... B2FT35 N/A
    571069 6w81:A (1.55) BS01 X77 3.4.19.12 GO:0008233 ... A0A059VJE6 N/A
    571070 6w81:B (1.55) BS01 X77 3.4.19.12 GO:0008233 ... A0A059VJE6 N/A
    571071 6w82:A (3.6) BS01 K ? GO:0005267 ... P97438 33127683
    571072 6w82:A (3.6) BS02 K ? GO:0005267 ... P97438 33127683
    571073 6w82:B (3.6) BS01 K ? GO:0005267 ... P97438 33127683
    571074 6w82:B (3.6) BS02 K ? GO:0005267 ... P97438 33127683
    571075 6w83:A (3.901) BS01 K ? GO:0005267 ... P97438 33127683
    571076 6w83:A (3.901) BS02 K ? GO:0005267 ... P97438 33127683
    571077 6w83:A (3.901) BS03 K ? GO:0005267 ... P97438 33127683
    571078 6w83:A (3.901) BS04 K ? GO:0005267 ... P97438 33127683
    571079 6w83:B (3.901) BS01 K ? GO:0005267 ... P97438 33127683
    571080 6w83:B (3.901) BS02 K ? GO:0005267 ... P97438 33127683
    571081 6w83:B (3.901) BS03 K ? GO:0005267 ... P97438 33127683
    571082 6w83:B (3.901) BS04 K ? GO:0005267 ... P97438 33127683
    571083 6w84:A (3.7) BS01 K ? GO:0005267 ... P97438 33127683
    571084 6w84:A (3.7) BS02 K ? GO:0005267 ... P97438 33127683
    571085 6w84:A (3.7) BS03 K ? GO:0005267 ... P97438 33127683
    571086 6w84:A (3.7) BS04 K ? GO:0005267 ... P97438 33127683
    571087 6w84:B (3.7) BS01 K ? GO:0005267 ... P97438 33127683
    571088 6w84:B (3.7) BS02 K ? GO:0005267 ... P97438 33127683
    571089 6w84:B (3.7) BS03 K ? GO:0005267 ... P97438 33127683
    571090 6w84:B (3.7) BS04 K ? GO:0005267 ... P97438 33127683
    571091 6w85:A (3.8) BS01 K ? GO:0005267 ... P97438 33127683
    571092 6w85:A (3.8) BS02 K ? GO:0005267 ... P97438 33127683
    571093 6w85:A (3.8) BS03 Q6F ? GO:0005267 ... P97438 33127683
    571094 6w85:A (3.8) BS04 K ? GO:0005267 ... P97438 33127683
    571095 6w85:A (3.8) BS05 K ? GO:0005267 ... P97438 33127683
    571096 6w85:B (3.8) BS01 K ? GO:0005267 ... P97438 33127683
    571097 6w85:B (3.8) BS02 K ? GO:0005267 ... P97438 33127683
    571098 6w85:B (3.8) BS03 K ? GO:0005267 ... P97438 33127683
    571099 6w85:B (3.8) BS04 K ? GO:0005267 ... P97438 33127683
    571100 6w85:B (3.8) BS05 Q6F ? GO:0005267 ... P97438 33127683
    571101 6w86:A (3.299) BS01 K ? GO:0005267 ... P97438 33127683
    571102 6w86:A (3.299) BS02 K ? GO:0005267 ... P97438 33127683
    571103 6w86:A (3.299) BS03 Q6F ? GO:0005267 ... P97438 33127683
    571104 6w86:A (3.299) BS04 K ? GO:0005267 ... P97438 33127683
    571105 6w86:A (3.299) BS05 K ? GO:0005267 ... P97438 33127683
    571106 6w86:B (3.299) BS01 K ? GO:0005267 ... P97438 33127683
    571107 6w86:B (3.299) BS02 K ? GO:0005267 ... P97438 33127683
    571108 6w86:B (3.299) BS03 K ? GO:0005267 ... P97438 33127683
    571109 6w86:B (3.299) BS04 K ? GO:0005267 ... P97438 33127683
    571110 6w86:B (3.299) BS05 Q6F ? GO:0005267 ... P97438 33127683
    571111 6w87:A (3.2) BS01 K ? GO:0005267 ... P97438 33127683
    571112 6w87:A (3.2) BS02 K ? GO:0005267 ... P97438 33127683
    571113 6w87:A (3.2) BS03 Q6F ? GO:0005267 ... P97438 33127683
    571114 6w87:A (3.2) BS04 K ? GO:0005267 ... P97438 33127683
    571115 6w87:A (3.2) BS05 K ? GO:0005267 ... P97438 33127683
    571116 6w87:B (3.2) BS01 K ? GO:0005267 ... P97438 33127683
    571117 6w87:B (3.2) BS02 K ? GO:0005267 ... P97438 33127683
    571118 6w87:B (3.2) BS03 K ? GO:0005267 ... P97438 33127683
    571119 6w87:B (3.2) BS04 K ? GO:0005267 ... P97438 33127683
    571120 6w87:B (3.2) BS05 Q6F ? GO:0005267 ... P97438 33127683
    571121 6w88:A (3.2) BS01 Q6F ? GO:0005267 ... P97438 33127683
    571122 6w88:A (3.2) BS02 K ? GO:0005267 ... P97438 33127683
    571123 6w88:A (3.2) BS03 K ? GO:0005267 ... P97438 33127683
    571124 6w88:A (3.2) BS04 K ? GO:0005267 ... P97438 33127683
    571125 6w88:A (3.2) BS05 K ? GO:0005267 ... P97438 33127683
    571126 6w88:B (3.2) BS01 K ? GO:0005267 ... P97438 33127683
    571127 6w88:B (3.2) BS02 K ? GO:0005267 ... P97438 33127683
    571128 6w88:B (3.2) BS03 K ? GO:0005267 ... P97438 33127683
    571129 6w88:B (3.2) BS04 Q6F ? GO:0005267 ... P97438 33127683
    571130 6w88:B (3.2) BS05 K ? GO:0005267 ... P97438 33127683
    571131 6w89:A (2.499) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571132 6w89:A (2.499) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571133 6w89:A (2.499) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571134 6w89:D (2.499) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571135 6w89:D (2.499) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571136 6w89:D (2.499) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571137 6w89:G (2.499) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571138 6w89:G (2.499) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571139 6w89:G (2.499) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571140 6w89:J (2.499) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571141 6w89:J (2.499) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571142 6w89:J (2.499) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571143 6w8a:A (3.002) BS01 K ? GO:0005267 ... P97438 33127683
    571144 6w8a:A (3.002) BS02 K ? GO:0005267 ... P97438 33127683
    571145 6w8a:A (3.002) BS03 Q6F ? GO:0005267 ... P97438 33127683
    571146 6w8a:A (3.002) BS04 16C ? GO:0005267 ... P97438 33127683
    571147 6w8a:A (3.002) BS05 K ? GO:0005267 ... P97438 33127683
    571148 6w8a:A (3.002) BS06 K ? GO:0005267 ... P97438 33127683
    571149 6w8a:B (3.002) BS01 K ? GO:0005267 ... P97438 33127683
    571150 6w8a:B (3.002) BS02 K ? GO:0005267 ... P97438 33127683
    571151 6w8a:B (3.002) BS03 K ? GO:0005267 ... P97438 33127683
    571152 6w8a:B (3.002) BS04 K ? GO:0005267 ... P97438 33127683
    571153 6w8a:B (3.002) BS05 Q6F ? GO:0005267 ... P97438 33127683
    571154 6w8b:A (2.4) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571155 6w8b:A (2.4) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571156 6w8b:A (2.4) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571157 6w8b:D (2.4) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571158 6w8b:D (2.4) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571159 6w8b:D (2.4) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571160 6w8b:H (2.4) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571161 6w8b:H (2.4) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571162 6w8b:H (2.4) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571163 6w8b:K (2.4) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571164 6w8b:K (2.4) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571165 6w8b:K (2.4) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571166 6w8c:A (2.6) BS01 K ? GO:0005267 ... P97438 33127683
    571167 6w8c:A (2.6) BS02 K ? GO:0005267 ... P97438 33127683
    571168 6w8c:A (2.6) BS03 K ? GO:0005267 ... P97438 33127683
    571169 6w8c:A (2.6) BS04 Q6F ? GO:0005267 ... P97438 33127683
    571170 6w8c:A (2.6) BS05 IEP ? GO:0005267 ... P97438 33127683
    571171 6w8c:A (2.6) BS06 K ? GO:0005267 ... P97438 33127683
    571172 6w8c:B (2.6) BS01 K ? GO:0005267 ... P97438 33127683
    571173 6w8c:B (2.6) BS02 K ? GO:0005267 ... P97438 33127683
    571174 6w8c:B (2.6) BS03 K ? GO:0005267 ... P97438 33127683
    571175 6w8c:B (2.6) BS04 K ? GO:0005267 ... P97438 33127683
    571176 6w8c:B (2.6) BS05 K ? GO:0005267 ... P97438 33127683
    571177 6w8c:B (2.6) BS06 B7G ? GO:0005267 ... P97438 33127683
    571178 6w8c:B (2.6) BS07 IEP ? GO:0005267 ... P97438 33127683
    571179 6w8c:B (2.6) BS08 Q6F ? GO:0005267 ... P97438 33127683
    571180 6w8d:A (2.598) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571181 6w8d:A (2.598) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571182 6w8d:A (2.598) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571183 6w8d:D (2.598) BS01 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571184 6w8d:D (2.598) BS02 dna 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571185 6w8d:D (2.598) BS03 SAH 2.1.1.-
    2.1.1.37
    GO:0008168 ... Q9Y6K1 32385248
    571186 6w8f:A (3.4) BS01 K ? GO:0005267 ... P97438 33127683
    571187 6w8f:A (3.4) BS02 Q6F ? GO:0005267 ... P97438 33127683
    571188 6w8f:A (3.4) BS03 16C ? GO:0005267 ... P97438 33127683
    571189 6w8f:A (3.4) BS04 K ? GO:0005267 ... P97438 33127683
    571190 6w8f:A (3.4) BS05 K ? GO:0005267 ... P97438 33127683
    571191 6w8f:A (3.4) BS06 K ? GO:0005267 ... P97438 33127683
    571192 6w8f:B (3.4) BS01 K ? GO:0005267 ... P97438 33127683
    571193 6w8f:B (3.4) BS02 K ? GO:0005267 ... P97438 33127683
    571194 6w8f:B (3.4) BS03 K ? GO:0005267 ... P97438 33127683
    571195 6w8f:B (3.4) BS04 K ? GO:0005267 ... P97438 33127683
    571196 6w8f:B (3.4) BS05 Q6F ? GO:0005267 ... P97438 33127683
    571197 6w8h:A (1.97) BS01 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 33059303
    571198 6w8h:A (1.97) BS02 TJG 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 33059303 MOAD: ic50=9.4nM
    571199 6w8h:C (1.97) BS01 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 33059303
    571200 6w8h:C (1.97) BS02 TJG 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 33059303 MOAD: ic50=9.4nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).