SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    572001 6wd5:R (3.6) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572002 6wd5:R (3.6) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572003 6wd5:S (3.6) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572004 6wd5:T (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572005 6wd5:T (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572006 6wd5:U (3.6) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572007 6wd5:V (3.6) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572008 6wd5:W (3.6) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572009 6wd5:X (3.6) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572010 6wd5:Y (3.6) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572011 6wd5:Z (3.6) BS01 rna ? GO:0000028 ... P68679 32612237
    572012 6wd5:a (3.6) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572013 6wd5:a (3.6) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572014 6wd5:b (3.6) BS01 rna ? GO:0000027 ... P60422 32612237
    572015 6wd5:b (3.6) BS02 rna ? GO:0000027 ... P60422 32612237
    572016 6wd5:c (3.6) BS01 rna ? GO:0000027 ... P60438 32612237
    572017 6wd5:d (3.6) BS01 rna ? GO:0001070 ... P60723 32612237
    572018 6wd5:e (3.6) BS01 rna ? GO:0000027 ... P62399 32612237
    572019 6wd5:e (3.6) BS02 rna ? GO:0000027 ... P62399 32612237
    572020 6wd5:e (3.6) BS03 rna ? GO:0000027 ... P62399 32612237
    572021 6wd5:f (3.6) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572022 6wd5:g (3.6) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572023 6wd5:h (3.6) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572024 6wd5:i (3.6) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572025 6wd5:i (3.6) BS02 rna ? GO:0000027 ... P0A7J7 32612237
    572026 6wd5:j (3.6) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572027 6wd5:k (3.6) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572028 6wd5:k (3.6) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572029 6wd5:l (3.6) BS01 rna ? GO:0002181 ... P02413 32612237
    572030 6wd5:m (3.6) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572031 6wd5:m (3.6) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572032 6wd5:n (3.6) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572033 6wd5:o (3.6) BS01 rna ? GO:0002181 ... P0C018 32612237
    572034 6wd5:o (3.6) BS02 rna ? GO:0002181 ... P0C018 32612237
    572035 6wd5:p (3.6) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572036 6wd5:p (3.6) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572037 6wd5:q (3.6) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572038 6wd5:r (3.6) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572039 6wd5:s (3.6) BS01 rna ? GO:0002181 ... P61175 32612237
    572040 6wd5:t (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572041 6wd5:u (3.6) BS01 rna ? GO:0000027 ... P60624 32612237
    572042 6wd5:v (3.6) BS01 rna ? GO:0000027 ... P68919 32612237
    572043 6wd5:v (3.6) BS02 rna ? GO:0000027 ... P68919 32612237
    572044 6wd5:w (3.6) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572045 6wd5:w (3.6) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572046 6wd5:x (3.6) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572047 6wd5:y (3.6) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572048 6wd5:z (3.6) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572049 6wd5:z (3.6) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572050 6wd6:8 (3.7) BS01 rna ? GO:0000287 ... P0CE47 32612237
    572051 6wd6:8 (3.7) BS02 rna ? GO:0000287 ... P0CE47 32612237
    572052 6wd6:8 (3.7) BS03 PHE ? GO:0000287 ... P0CE47 32612237
    572053 6wd6:8 (3.7) BS04 GDP ? GO:0000287 ... P0CE47 32612237
    572054 6wd6:B (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572055 6wd6:C (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572056 6wd6:D (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572057 6wd6:E (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572058 6wd6:F (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572059 6wd6:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572060 6wd6:H (3.7) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572061 6wd6:I (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572062 6wd6:J (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572063 6wd6:K (3.7) BS01 rna ? GO:0003735 ... P02358 32612237
    572064 6wd6:L (3.7) BS01 rna ? GO:0003723 ... P02359 32612237
    572065 6wd6:L (3.7) BS02 rna ? GO:0003723 ... P02359 32612237
    572066 6wd6:L (3.7) BS03 rna ? GO:0003723 ... P02359 32612237
    572067 6wd6:M (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572068 6wd6:N (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572069 6wd6:O (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572070 6wd6:P (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572071 6wd6:Q (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572072 6wd6:R (3.7) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572073 6wd6:R (3.7) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572074 6wd6:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572075 6wd6:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572076 6wd6:T (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572077 6wd6:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572078 6wd6:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572079 6wd6:W (3.7) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572080 6wd6:X (3.7) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572081 6wd6:Y (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572082 6wd6:Z (3.7) BS01 rna ? GO:0000028 ... P68679 32612237
    572083 6wd6:a (3.7) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572084 6wd6:a (3.7) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572085 6wd6:b (3.7) BS01 rna ? GO:0000027 ... P60422 32612237
    572086 6wd6:b (3.7) BS02 rna ? GO:0000027 ... P60422 32612237
    572087 6wd6:c (3.7) BS01 rna ? GO:0000027 ... P60438 32612237
    572088 6wd6:d (3.7) BS01 rna ? GO:0001070 ... P60723 32612237
    572089 6wd6:e (3.7) BS01 rna ? GO:0000027 ... P62399 32612237
    572090 6wd6:e (3.7) BS02 rna ? GO:0000027 ... P62399 32612237
    572091 6wd6:e (3.7) BS03 rna ? GO:0000027 ... P62399 32612237
    572092 6wd6:f (3.7) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572093 6wd6:g (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572094 6wd6:h (3.7) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572095 6wd6:i (3.7) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572096 6wd6:i (3.7) BS02 rna ? GO:0000027 ... P0A7J7 32612237
    572097 6wd6:j (3.7) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572098 6wd6:k (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572099 6wd6:k (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572100 6wd6:l (3.7) BS01 rna ? GO:0002181 ... P02413 32612237
    572101 6wd6:m (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572102 6wd6:m (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572103 6wd6:n (3.7) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572104 6wd6:o (3.7) BS01 rna ? GO:0002181 ... P0C018 32612237
    572105 6wd6:o (3.7) BS02 rna ? GO:0002181 ... P0C018 32612237
    572106 6wd6:p (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572107 6wd6:p (3.7) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572108 6wd6:q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572109 6wd6:r (3.7) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572110 6wd6:s (3.7) BS01 rna ? GO:0002181 ... P61175 32612237
    572111 6wd6:t (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572112 6wd6:u (3.7) BS01 rna ? GO:0000027 ... P60624 32612237
    572113 6wd6:v (3.7) BS01 rna ? GO:0000027 ... P68919 32612237
    572114 6wd6:v (3.7) BS02 rna ? GO:0000027 ... P68919 32612237
    572115 6wd6:w (3.7) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572116 6wd6:w (3.7) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572117 6wd6:x (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572118 6wd6:y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572119 6wd6:z (3.7) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572120 6wd6:z (3.7) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572121 6wd7:8 (3.9) BS01 rna ? GO:0000287 ... P0CE47 32612237
    572122 6wd7:B (3.9) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572123 6wd7:C (3.9) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572124 6wd7:D (3.9) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572125 6wd7:E (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572126 6wd7:F (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572127 6wd7:G (3.9) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572128 6wd7:H (3.9) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572129 6wd7:I (3.9) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572130 6wd7:J (3.9) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572131 6wd7:K (3.9) BS01 rna ? GO:0003735 ... P02358 32612237
    572132 6wd7:L (3.9) BS01 rna ? GO:0003723 ... P02359 32612237
    572133 6wd7:L (3.9) BS02 rna ? GO:0003723 ... P02359 32612237
    572134 6wd7:M (3.9) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572135 6wd7:N (3.9) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572136 6wd7:O (3.9) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572137 6wd7:P (3.9) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572138 6wd7:Q (3.9) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572139 6wd7:R (3.9) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572140 6wd7:R (3.9) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572141 6wd7:S (3.9) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572142 6wd7:T (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572143 6wd7:T (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572144 6wd7:U (3.9) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572145 6wd7:V (3.9) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572146 6wd7:W (3.9) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572147 6wd7:X (3.9) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572148 6wd7:Y (3.9) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572149 6wd7:Z (3.9) BS01 rna ? GO:0000028 ... P68679 32612237
    572150 6wd7:a (3.9) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572151 6wd7:a (3.9) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572152 6wd7:b (3.9) BS01 rna ? GO:0000027 ... P60422 32612237
    572153 6wd7:b (3.9) BS02 rna ? GO:0000027 ... P60422 32612237
    572154 6wd7:c (3.9) BS01 rna ? GO:0000027 ... P60438 32612237
    572155 6wd7:d (3.9) BS01 rna ? GO:0001070 ... P60723 32612237
    572156 6wd7:e (3.9) BS01 rna ? GO:0000027 ... P62399 32612237
    572157 6wd7:e (3.9) BS02 rna ? GO:0000027 ... P62399 32612237
    572158 6wd7:e (3.9) BS03 rna ? GO:0000027 ... P62399 32612237
    572159 6wd7:f (3.9) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572160 6wd7:f (3.9) BS02 rna ? GO:0000027 ... P0AG55 32612237
    572161 6wd7:g (3.9) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572162 6wd7:h (3.9) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572163 6wd7:i (3.9) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572164 6wd7:j (3.9) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572165 6wd7:k (3.9) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572166 6wd7:k (3.9) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572167 6wd7:l (3.9) BS01 rna ? GO:0002181 ... P02413 32612237
    572168 6wd7:m (3.9) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572169 6wd7:m (3.9) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572170 6wd7:n (3.9) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572171 6wd7:o (3.9) BS01 rna ? GO:0002181 ... P0C018 32612237
    572172 6wd7:o (3.9) BS02 rna ? GO:0002181 ... P0C018 32612237
    572173 6wd7:p (3.9) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572174 6wd7:p (3.9) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572175 6wd7:q (3.9) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572176 6wd7:r (3.9) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572177 6wd7:s (3.9) BS01 rna ? GO:0002181 ... P61175 32612237
    572178 6wd7:t (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572179 6wd7:u (3.9) BS01 rna ? GO:0000027 ... P60624 32612237
    572180 6wd7:v (3.9) BS01 rna ? GO:0000027 ... P68919 32612237
    572181 6wd7:v (3.9) BS02 rna ? GO:0000027 ... P68919 32612237
    572182 6wd7:w (3.9) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572183 6wd7:w (3.9) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572184 6wd7:x (3.9) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572185 6wd7:y (3.9) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572186 6wd7:z (3.9) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572187 6wd7:z (3.9) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572188 6wd8:8 (3.7) BS01 rna ? GO:0000287 ... P0CE47 32612237
    572189 6wd8:8 (3.7) BS02 rna ? GO:0000287 ... P0CE47 32612237
    572190 6wd8:8 (3.7) BS03 GTP ? GO:0000287 ... P0CE47 32612237
    572191 6wd8:B (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572192 6wd8:C (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572193 6wd8:D (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572194 6wd8:E (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572195 6wd8:F (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572196 6wd8:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572197 6wd8:H (3.7) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572198 6wd8:I (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572199 6wd8:J (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572200 6wd8:K (3.7) BS01 rna ? GO:0003735 ... P02358 32612237

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).