SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    572201 6wd8:L (3.7) BS01 rna ? GO:0003723 ... P02359 32612237
    572202 6wd8:L (3.7) BS02 rna ? GO:0003723 ... P02359 32612237
    572203 6wd8:M (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572204 6wd8:N (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572205 6wd8:O (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572206 6wd8:P (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572207 6wd8:Q (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572208 6wd8:R (3.7) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572209 6wd8:R (3.7) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572210 6wd8:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572211 6wd8:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572212 6wd8:T (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572213 6wd8:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572214 6wd8:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572215 6wd8:W (3.7) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572216 6wd8:X (3.7) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572217 6wd8:Y (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572218 6wd8:Z (3.7) BS01 rna ? GO:0000028 ... P68679 32612237
    572219 6wd8:Z (3.7) BS02 rna ? GO:0000028 ... P68679 32612237
    572220 6wd8:a (3.7) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572221 6wd8:a (3.7) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572222 6wd8:b (3.7) BS01 rna ? GO:0000027 ... P60422 32612237
    572223 6wd8:b (3.7) BS02 rna ? GO:0000027 ... P60422 32612237
    572224 6wd8:c (3.7) BS01 rna ? GO:0000027 ... P60438 32612237
    572225 6wd8:d (3.7) BS01 rna ? GO:0001070 ... P60723 32612237
    572226 6wd8:e (3.7) BS01 rna ? GO:0000027 ... P62399 32612237
    572227 6wd8:e (3.7) BS02 rna ? GO:0000027 ... P62399 32612237
    572228 6wd8:e (3.7) BS03 rna ? GO:0000027 ... P62399 32612237
    572229 6wd8:f (3.7) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572230 6wd8:g (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572231 6wd8:h (3.7) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572232 6wd8:i (3.7) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572233 6wd8:i (3.7) BS02 rna ? GO:0000027 ... P0A7J7 32612237
    572234 6wd8:j (3.7) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572235 6wd8:k (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572236 6wd8:k (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572237 6wd8:l (3.7) BS01 rna ? GO:0002181 ... P02413 32612237
    572238 6wd8:m (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572239 6wd8:m (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572240 6wd8:n (3.7) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572241 6wd8:o (3.7) BS01 rna ? GO:0002181 ... P0C018 32612237
    572242 6wd8:o (3.7) BS02 rna ? GO:0002181 ... P0C018 32612237
    572243 6wd8:p (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572244 6wd8:p (3.7) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572245 6wd8:q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572246 6wd8:r (3.7) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572247 6wd8:s (3.7) BS01 rna ? GO:0002181 ... P61175 32612237
    572248 6wd8:t (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572249 6wd8:u (3.7) BS01 rna ? GO:0000027 ... P60624 32612237
    572250 6wd8:v (3.7) BS01 rna ? GO:0000027 ... P68919 32612237
    572251 6wd8:v (3.7) BS02 rna ? GO:0000027 ... P68919 32612237
    572252 6wd8:w (3.7) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572253 6wd8:w (3.7) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572254 6wd8:x (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572255 6wd8:x (3.7) BS02 rna ? GO:0000027 ... P0A7M2 32612237
    572256 6wd8:y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572257 6wd8:z (3.7) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572258 6wd8:z (3.7) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572259 6wd9:8 (3.7) BS01 rna ? GO:0000287 ... P0CE47 32612237
    572260 6wd9:8 (3.7) BS02 rna ? GO:0000287 ... P0CE47 32612237
    572261 6wd9:8 (3.7) BS03 PHE ? GO:0000287 ... P0CE47 32612237
    572262 6wd9:8 (3.7) BS04 GDP ? GO:0000287 ... P0CE47 32612237
    572263 6wd9:B (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572264 6wd9:C (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572265 6wd9:D (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572266 6wd9:E (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572267 6wd9:F (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572268 6wd9:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572269 6wd9:H (3.7) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572270 6wd9:I (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572271 6wd9:J (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572272 6wd9:K (3.7) BS01 rna ? GO:0003735 ... P02358 32612237
    572273 6wd9:L (3.7) BS01 rna ? GO:0003723 ... P02359 32612237
    572274 6wd9:L (3.7) BS02 rna ? GO:0003723 ... P02359 32612237
    572275 6wd9:L (3.7) BS03 rna ? GO:0003723 ... P02359 32612237
    572276 6wd9:M (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572277 6wd9:N (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572278 6wd9:N (3.7) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    572279 6wd9:O (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572280 6wd9:P (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572281 6wd9:Q (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572282 6wd9:R (3.7) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572283 6wd9:R (3.7) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572284 6wd9:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572285 6wd9:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572286 6wd9:T (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572287 6wd9:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572288 6wd9:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572289 6wd9:W (3.7) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572290 6wd9:X (3.7) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572291 6wd9:Y (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572292 6wd9:Z (3.7) BS01 rna ? GO:0000028 ... P68679 32612237
    572293 6wd9:a (3.7) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572294 6wd9:a (3.7) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572295 6wd9:b (3.7) BS01 rna ? GO:0000027 ... P60422 32612237
    572296 6wd9:b (3.7) BS02 rna ? GO:0000027 ... P60422 32612237
    572297 6wd9:c (3.7) BS01 rna ? GO:0000027 ... P60438 32612237
    572298 6wd9:d (3.7) BS01 rna ? GO:0001070 ... P60723 32612237
    572299 6wd9:e (3.7) BS01 rna ? GO:0000027 ... P62399 32612237
    572300 6wd9:e (3.7) BS02 rna ? GO:0000027 ... P62399 32612237
    572301 6wd9:e (3.7) BS03 rna ? GO:0000027 ... P62399 32612237
    572302 6wd9:f (3.7) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572303 6wd9:g (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572304 6wd9:h (3.7) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572305 6wd9:i (3.7) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572306 6wd9:j (3.7) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572307 6wd9:k (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572308 6wd9:k (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572309 6wd9:l (3.7) BS01 rna ? GO:0002181 ... P02413 32612237
    572310 6wd9:m (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572311 6wd9:m (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572312 6wd9:n (3.7) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572313 6wd9:o (3.7) BS01 rna ? GO:0002181 ... P0C018 32612237
    572314 6wd9:o (3.7) BS02 rna ? GO:0002181 ... P0C018 32612237
    572315 6wd9:p (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572316 6wd9:p (3.7) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572317 6wd9:q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572318 6wd9:r (3.7) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572319 6wd9:s (3.7) BS01 rna ? GO:0002181 ... P61175 32612237
    572320 6wd9:t (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572321 6wd9:u (3.7) BS01 rna ? GO:0000027 ... P60624 32612237
    572322 6wd9:v (3.7) BS01 rna ? GO:0000027 ... P68919 32612237
    572323 6wd9:v (3.7) BS02 rna ? GO:0000027 ... P68919 32612237
    572324 6wd9:w (3.7) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572325 6wd9:w (3.7) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572326 6wd9:x (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572327 6wd9:y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572328 6wd9:z (3.7) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572329 6wda:8 (3.8) BS01 rna ? GO:0000287 ... P0CE47 32612237
    572330 6wda:8 (3.8) BS02 rna ? GO:0000287 ... P0CE47 32612237
    572331 6wda:8 (3.8) BS03 PHE ? GO:0000287 ... P0CE47 32612237
    572332 6wda:8 (3.8) BS04 GDP ? GO:0000287 ... P0CE47 32612237
    572333 6wda:B (3.8) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572334 6wda:C (3.8) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572335 6wda:D (3.8) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572336 6wda:E (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572337 6wda:F (3.8) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572338 6wda:G (3.8) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572339 6wda:H (3.8) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572340 6wda:I (3.8) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572341 6wda:J (3.8) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572342 6wda:K (3.8) BS01 rna ? GO:0003735 ... P02358 32612237
    572343 6wda:L (3.8) BS01 rna ? GO:0003723 ... P02359 32612237
    572344 6wda:L (3.8) BS02 rna ? GO:0003723 ... P02359 32612237
    572345 6wda:M (3.8) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572346 6wda:N (3.8) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572347 6wda:N (3.8) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    572348 6wda:O (3.8) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572349 6wda:P (3.8) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572350 6wda:Q (3.8) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572351 6wda:R (3.8) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572352 6wda:R (3.8) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572353 6wda:S (3.8) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572354 6wda:T (3.8) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572355 6wda:T (3.8) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572356 6wda:U (3.8) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572357 6wda:V (3.8) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572358 6wda:W (3.8) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572359 6wda:X (3.8) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572360 6wda:Y (3.8) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572361 6wda:Z (3.8) BS01 rna ? GO:0000028 ... P68679 32612237
    572362 6wda:a (3.8) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572363 6wda:a (3.8) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572364 6wda:b (3.8) BS01 rna ? GO:0000027 ... P60422 32612237
    572365 6wda:b (3.8) BS02 rna ? GO:0000027 ... P60422 32612237
    572366 6wda:c (3.8) BS01 rna ? GO:0000027 ... P60438 32612237
    572367 6wda:d (3.8) BS01 rna ? GO:0001070 ... P60723 32612237
    572368 6wda:e (3.8) BS01 rna ? GO:0000027 ... P62399 32612237
    572369 6wda:e (3.8) BS02 rna ? GO:0000027 ... P62399 32612237
    572370 6wda:e (3.8) BS03 rna ? GO:0000027 ... P62399 32612237
    572371 6wda:f (3.8) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572372 6wda:g (3.8) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572373 6wda:h (3.8) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572374 6wda:i (3.8) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572375 6wda:j (3.8) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572376 6wda:k (3.8) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572377 6wda:k (3.8) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572378 6wda:l (3.8) BS01 rna ? GO:0002181 ... P02413 32612237
    572379 6wda:m (3.8) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572380 6wda:m (3.8) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572381 6wda:n (3.8) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572382 6wda:o (3.8) BS01 rna ? GO:0002181 ... P0C018 32612237
    572383 6wda:o (3.8) BS02 rna ? GO:0002181 ... P0C018 32612237
    572384 6wda:p (3.8) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572385 6wda:p (3.8) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572386 6wda:q (3.8) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572387 6wda:r (3.8) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572388 6wda:s (3.8) BS01 rna ? GO:0002181 ... P61175 32612237
    572389 6wda:t (3.8) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572390 6wda:u (3.8) BS01 rna ? GO:0000027 ... P60624 32612237
    572391 6wda:v (3.8) BS01 rna ? GO:0000027 ... P68919 32612237
    572392 6wda:v (3.8) BS02 rna ? GO:0000027 ... P68919 32612237
    572393 6wda:w (3.8) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572394 6wda:w (3.8) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572395 6wda:x (3.8) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572396 6wda:y (3.8) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572397 6wda:z (3.8) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572398 6wdb:B (4.0) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572399 6wdb:C (4.0) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572400 6wdb:D (4.0) BS01 rna ? GO:0002181 ... P0A7P5 32612237

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).