SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    572401 6wdb:E (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572402 6wdb:F (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572403 6wdb:G (4.0) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572404 6wdb:H (4.0) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572405 6wdb:I (4.0) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572406 6wdb:J (4.0) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572407 6wdb:K (4.0) BS01 rna ? GO:0003735 ... P02358 32612237
    572408 6wdb:L (4.0) BS01 rna ? GO:0003723 ... P02359 32612237
    572409 6wdb:L (4.0) BS02 rna ? GO:0003723 ... P02359 32612237
    572410 6wdb:M (4.0) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572411 6wdb:N (4.0) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572412 6wdb:O (4.0) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572413 6wdb:P (4.0) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572414 6wdb:Q (4.0) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572415 6wdb:R (4.0) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572416 6wdb:S (4.0) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572417 6wdb:T (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572418 6wdb:T (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572419 6wdb:U (4.0) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572420 6wdb:V (4.0) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572421 6wdb:W (4.0) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572422 6wdb:X (4.0) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572423 6wdb:Y (4.0) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572424 6wdb:Z (4.0) BS01 rna ? GO:0000028 ... P68679 32612237
    572425 6wdb:a (4.0) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572426 6wdb:b (4.0) BS01 rna ? GO:0000027 ... P60422 32612237
    572427 6wdb:b (4.0) BS02 rna ? GO:0000027 ... P60422 32612237
    572428 6wdb:c (4.0) BS01 rna ? GO:0000027 ... P60438 32612237
    572429 6wdb:d (4.0) BS01 rna ? GO:0001070 ... P60723 32612237
    572430 6wdb:e (4.0) BS01 rna ? GO:0000027 ... P62399 32612237
    572431 6wdb:e (4.0) BS02 rna ? GO:0000027 ... P62399 32612237
    572432 6wdb:e (4.0) BS03 rna ? GO:0000027 ... P62399 32612237
    572433 6wdb:f (4.0) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572434 6wdb:g (4.0) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572435 6wdb:h (4.0) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572436 6wdb:i (4.0) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572437 6wdb:j (4.0) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572438 6wdb:k (4.0) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572439 6wdb:k (4.0) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572440 6wdb:l (4.0) BS01 rna ? GO:0002181 ... P02413 32612237
    572441 6wdb:m (4.0) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572442 6wdb:m (4.0) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572443 6wdb:m (4.0) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    572444 6wdb:n (4.0) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572445 6wdb:o (4.0) BS01 rna ? GO:0002181 ... P0C018 32612237
    572446 6wdb:o (4.0) BS02 rna ? GO:0002181 ... P0C018 32612237
    572447 6wdb:p (4.0) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572448 6wdb:p (4.0) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572449 6wdb:q (4.0) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572450 6wdb:r (4.0) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572451 6wdb:s (4.0) BS01 rna ? GO:0002181 ... P61175 32612237
    572452 6wdb:t (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572453 6wdb:u (4.0) BS01 rna ? GO:0000027 ... P60624 32612237
    572454 6wdb:v (4.0) BS01 rna ? GO:0000027 ... P68919 32612237
    572455 6wdb:v (4.0) BS02 rna ? GO:0000027 ... P68919 32612237
    572456 6wdb:w (4.0) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572457 6wdb:w (4.0) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572458 6wdb:x (4.0) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572459 6wdb:x (4.0) BS02 rna ? GO:0000027 ... P0A7M2 32612237
    572460 6wdb:y (4.0) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572461 6wdb:z (4.0) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572462 6wdb:z (4.0) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572463 6wdc:B (4.2) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572464 6wdc:C (4.2) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572465 6wdc:D (4.2) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572466 6wdc:E (4.2) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572467 6wdc:F (4.2) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572468 6wdc:G (4.2) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572469 6wdc:H (4.2) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572470 6wdc:I (4.2) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572471 6wdc:J (4.2) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572472 6wdc:K (4.2) BS01 rna ? GO:0003735 ... P02358 32612237
    572473 6wdc:L (4.2) BS01 rna ? GO:0003723 ... P02359 32612237
    572474 6wdc:L (4.2) BS02 rna ? GO:0003723 ... P02359 32612237
    572475 6wdc:L (4.2) BS03 rna ? GO:0003723 ... P02359 32612237
    572476 6wdc:M (4.2) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572477 6wdc:N (4.2) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572478 6wdc:N (4.2) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    572479 6wdc:O (4.2) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572480 6wdc:P (4.2) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572481 6wdc:Q (4.2) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572482 6wdc:R (4.2) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572483 6wdc:R (4.2) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572484 6wdc:S (4.2) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572485 6wdc:T (4.2) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572486 6wdc:T (4.2) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572487 6wdc:U (4.2) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572488 6wdc:V (4.2) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572489 6wdc:W (4.2) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572490 6wdc:X (4.2) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572491 6wdc:Y (4.2) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572492 6wdc:Z (4.2) BS01 rna ? GO:0000028 ... P68679 32612237
    572493 6wdc:Z (4.2) BS02 rna ? GO:0000028 ... P68679 32612237
    572494 6wdc:a (4.2) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572495 6wdc:a (4.2) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572496 6wdc:b (4.2) BS01 rna ? GO:0000027 ... P60422 32612237
    572497 6wdc:b (4.2) BS02 rna ? GO:0000027 ... P60422 32612237
    572498 6wdc:c (4.2) BS01 rna ? GO:0000027 ... P60438 32612237
    572499 6wdc:d (4.2) BS01 rna ? GO:0001070 ... P60723 32612237
    572500 6wdc:e (4.2) BS01 rna ? GO:0000027 ... P62399 32612237
    572501 6wdc:e (4.2) BS02 rna ? GO:0000027 ... P62399 32612237
    572502 6wdc:e (4.2) BS03 rna ? GO:0000027 ... P62399 32612237
    572503 6wdc:f (4.2) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572504 6wdc:g (4.2) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572505 6wdc:h (4.2) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572506 6wdc:i (4.2) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572507 6wdc:j (4.2) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572508 6wdc:k (4.2) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572509 6wdc:k (4.2) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572510 6wdc:l (4.2) BS01 rna ? GO:0002181 ... P02413 32612237
    572511 6wdc:m (4.2) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572512 6wdc:m (4.2) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572513 6wdc:m (4.2) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    572514 6wdc:n (4.2) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572515 6wdc:o (4.2) BS01 rna ? GO:0002181 ... P0C018 32612237
    572516 6wdc:o (4.2) BS02 rna ? GO:0002181 ... P0C018 32612237
    572517 6wdc:p (4.2) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572518 6wdc:p (4.2) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572519 6wdc:q (4.2) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572520 6wdc:r (4.2) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572521 6wdc:s (4.2) BS01 rna ? GO:0002181 ... P61175 32612237
    572522 6wdc:t (4.2) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572523 6wdc:u (4.2) BS01 rna ? GO:0000027 ... P60624 32612237
    572524 6wdc:v (4.2) BS01 rna ? GO:0000027 ... P68919 32612237
    572525 6wdc:w (4.2) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572526 6wdc:w (4.2) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572527 6wdc:x (4.2) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572528 6wdc:y (4.2) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572529 6wdc:z (4.2) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572530 6wdc:z (4.2) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572531 6wdd:B (3.2) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572532 6wdd:C (3.2) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572533 6wdd:D (3.2) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572534 6wdd:E (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572535 6wdd:F (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572536 6wdd:G (3.2) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572537 6wdd:H (3.2) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572538 6wdd:I (3.2) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572539 6wdd:J (3.2) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572540 6wdd:K (3.2) BS01 rna ? GO:0003735 ... P02358 32612237
    572541 6wdd:L (3.2) BS01 rna ? GO:0003723 ... P02359 32612237
    572542 6wdd:L (3.2) BS02 rna ? GO:0003723 ... P02359 32612237
    572543 6wdd:L (3.2) BS03 rna ? GO:0003723 ... P02359 32612237
    572544 6wdd:M (3.2) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572545 6wdd:N (3.2) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572546 6wdd:N (3.2) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    572547 6wdd:O (3.2) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572548 6wdd:P (3.2) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572549 6wdd:Q (3.2) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572550 6wdd:R (3.2) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572551 6wdd:R (3.2) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572552 6wdd:S (3.2) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572553 6wdd:T (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572554 6wdd:T (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572555 6wdd:U (3.2) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572556 6wdd:V (3.2) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572557 6wdd:W (3.2) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572558 6wdd:X (3.2) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572559 6wdd:Y (3.2) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572560 6wdd:Z (3.2) BS01 rna ? GO:0000028 ... P68679 32612237
    572561 6wdd:a (3.2) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572562 6wdd:b (3.2) BS01 rna ? GO:0000027 ... P60422 32612237
    572563 6wdd:b (3.2) BS02 rna ? GO:0000027 ... P60422 32612237
    572564 6wdd:c (3.2) BS01 rna ? GO:0000027 ... P60438 32612237
    572565 6wdd:d (3.2) BS01 rna ? GO:0001070 ... P60723 32612237
    572566 6wdd:e (3.2) BS01 rna ? GO:0000027 ... P62399 32612237
    572567 6wdd:e (3.2) BS02 rna ? GO:0000027 ... P62399 32612237
    572568 6wdd:f (3.2) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572569 6wdd:g (3.2) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572570 6wdd:h (3.2) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572571 6wdd:i (3.2) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572572 6wdd:j (3.2) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572573 6wdd:k (3.2) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572574 6wdd:k (3.2) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572575 6wdd:l (3.2) BS01 rna ? GO:0002181 ... P02413 32612237
    572576 6wdd:m (3.2) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572577 6wdd:m (3.2) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572578 6wdd:m (3.2) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    572579 6wdd:n (3.2) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572580 6wdd:o (3.2) BS01 rna ? GO:0002181 ... P0C018 32612237
    572581 6wdd:o (3.2) BS02 rna ? GO:0002181 ... P0C018 32612237
    572582 6wdd:p (3.2) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572583 6wdd:p (3.2) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572584 6wdd:q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572585 6wdd:r (3.2) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572586 6wdd:s (3.2) BS01 rna ? GO:0002181 ... P61175 32612237
    572587 6wdd:t (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572588 6wdd:u (3.2) BS01 rna ? GO:0000027 ... P60624 32612237
    572589 6wdd:v (3.2) BS01 rna ? GO:0000027 ... P68919 32612237
    572590 6wdd:w (3.2) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572591 6wdd:w (3.2) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572592 6wdd:x (3.2) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572593 6wdd:y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572594 6wdd:z (3.2) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572595 6wdd:z (3.2) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572596 6wde:B (3.0) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572597 6wde:C (3.0) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572598 6wde:D (3.0) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572599 6wde:E (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572600 6wde:F (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 32612237

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).