SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    572601 6wde:G (3.0) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572602 6wde:H (3.0) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572603 6wde:I (3.0) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572604 6wde:J (3.0) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572605 6wde:K (3.0) BS01 rna ? GO:0003735 ... P02358 32612237
    572606 6wde:L (3.0) BS01 rna ? GO:0003723 ... P02359 32612237
    572607 6wde:L (3.0) BS02 rna ? GO:0003723 ... P02359 32612237
    572608 6wde:L (3.0) BS03 rna ? GO:0003723 ... P02359 32612237
    572609 6wde:M (3.0) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572610 6wde:N (3.0) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572611 6wde:N (3.0) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    572612 6wde:O (3.0) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572613 6wde:P (3.0) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572614 6wde:Q (3.0) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572615 6wde:R (3.0) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572616 6wde:R (3.0) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572617 6wde:S (3.0) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572618 6wde:T (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572619 6wde:T (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572620 6wde:U (3.0) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572621 6wde:V (3.0) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572622 6wde:W (3.0) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572623 6wde:X (3.0) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572624 6wde:Y (3.0) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572625 6wde:Z (3.0) BS01 rna ? GO:0000028 ... P68679 32612237
    572626 6wde:Z (3.0) BS02 rna ? GO:0000028 ... P68679 32612237
    572627 6wde:a (3.0) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572628 6wde:a (3.0) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572629 6wde:b (3.0) BS01 rna ? GO:0000027 ... P60422 32612237
    572630 6wde:b (3.0) BS02 rna ? GO:0000027 ... P60422 32612237
    572631 6wde:c (3.0) BS01 rna ? GO:0000027 ... P60438 32612237
    572632 6wde:d (3.0) BS01 rna ? GO:0001070 ... P60723 32612237
    572633 6wde:e (3.0) BS01 rna ? GO:0000027 ... P62399 32612237
    572634 6wde:e (3.0) BS02 rna ? GO:0000027 ... P62399 32612237
    572635 6wde:e (3.0) BS03 rna ? GO:0000027 ... P62399 32612237
    572636 6wde:f (3.0) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572637 6wde:g (3.0) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572638 6wde:h (3.0) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572639 6wde:i (3.0) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572640 6wde:j (3.0) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572641 6wde:k (3.0) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572642 6wde:k (3.0) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572643 6wde:l (3.0) BS01 rna ? GO:0002181 ... P02413 32612237
    572644 6wde:m (3.0) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572645 6wde:m (3.0) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572646 6wde:m (3.0) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    572647 6wde:n (3.0) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572648 6wde:o (3.0) BS01 rna ? GO:0002181 ... P0C018 32612237
    572649 6wde:o (3.0) BS02 rna ? GO:0002181 ... P0C018 32612237
    572650 6wde:p (3.0) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572651 6wde:p (3.0) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572652 6wde:q (3.0) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572653 6wde:r (3.0) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572654 6wde:s (3.0) BS01 rna ? GO:0002181 ... P61175 32612237
    572655 6wde:t (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572656 6wde:u (3.0) BS01 rna ? GO:0000027 ... P60624 32612237
    572657 6wde:v (3.0) BS01 rna ? GO:0000027 ... P68919 32612237
    572658 6wde:w (3.0) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572659 6wde:w (3.0) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572660 6wde:x (3.0) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572661 6wde:y (3.0) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572662 6wde:z (3.0) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572663 6wde:z (3.0) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572664 6wdf:B (3.3) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572665 6wdf:C (3.3) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572666 6wdf:D (3.3) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572667 6wdf:E (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572668 6wdf:F (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572669 6wdf:G (3.3) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572670 6wdf:H (3.3) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572671 6wdf:I (3.3) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572672 6wdf:J (3.3) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572673 6wdf:K (3.3) BS01 rna ? GO:0003735 ... P02358 32612237
    572674 6wdf:L (3.3) BS01 rna ? GO:0003723 ... P02359 32612237
    572675 6wdf:M (3.3) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572676 6wdf:N (3.3) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572677 6wdf:O (3.3) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572678 6wdf:P (3.3) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572679 6wdf:Q (3.3) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572680 6wdf:R (3.3) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572681 6wdf:S (3.3) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572682 6wdf:T (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572683 6wdf:T (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572684 6wdf:U (3.3) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572685 6wdf:V (3.3) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572686 6wdf:W (3.3) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572687 6wdf:X (3.3) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572688 6wdf:Y (3.3) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572689 6wdf:Z (3.3) BS01 rna ? GO:0000028 ... P68679 32612237
    572690 6wdf:a (3.3) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572691 6wdf:a (3.3) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572692 6wdf:b (3.3) BS01 rna ? GO:0000027 ... P60422 32612237
    572693 6wdf:b (3.3) BS02 rna ? GO:0000027 ... P60422 32612237
    572694 6wdf:c (3.3) BS01 rna ? GO:0000027 ... P60438 32612237
    572695 6wdf:d (3.3) BS01 rna ? GO:0001070 ... P60723 32612237
    572696 6wdf:e (3.3) BS01 rna ? GO:0000027 ... P62399 32612237
    572697 6wdf:e (3.3) BS02 rna ? GO:0000027 ... P62399 32612237
    572698 6wdf:f (3.3) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572699 6wdf:g (3.3) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572700 6wdf:h (3.3) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572701 6wdf:i (3.3) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572702 6wdf:j (3.3) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572703 6wdf:k (3.3) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572704 6wdf:k (3.3) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572705 6wdf:l (3.3) BS01 rna ? GO:0002181 ... P02413 32612237
    572706 6wdf:m (3.3) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572707 6wdf:m (3.3) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572708 6wdf:n (3.3) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572709 6wdf:o (3.3) BS01 rna ? GO:0002181 ... P0C018 32612237
    572710 6wdf:o (3.3) BS02 rna ? GO:0002181 ... P0C018 32612237
    572711 6wdf:p (3.3) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572712 6wdf:q (3.3) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572713 6wdf:r (3.3) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572714 6wdf:s (3.3) BS01 rna ? GO:0002181 ... P61175 32612237
    572715 6wdf:t (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572716 6wdf:u (3.3) BS01 rna ? GO:0000027 ... P60624 32612237
    572717 6wdf:v (3.3) BS01 rna ? GO:0000027 ... P68919 32612237
    572718 6wdf:v (3.3) BS02 rna ? GO:0000027 ... P68919 32612237
    572719 6wdf:w (3.3) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572720 6wdf:w (3.3) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572721 6wdf:x (3.3) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572722 6wdf:y (3.3) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572723 6wdf:z (3.3) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572724 6wdf:z (3.3) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572725 6wdg:B (3.3) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572726 6wdg:C (3.3) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572727 6wdg:D (3.3) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572728 6wdg:E (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572729 6wdg:F (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572730 6wdg:G (3.3) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572731 6wdg:H (3.3) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572732 6wdg:I (3.3) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572733 6wdg:J (3.3) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572734 6wdg:K (3.3) BS01 rna ? GO:0003735 ... P02358 32612237
    572735 6wdg:L (3.3) BS01 rna ? GO:0003723 ... P02359 32612237
    572736 6wdg:M (3.3) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572737 6wdg:N (3.3) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572738 6wdg:N (3.3) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    572739 6wdg:O (3.3) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572740 6wdg:P (3.3) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572741 6wdg:Q (3.3) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572742 6wdg:R (3.3) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572743 6wdg:S (3.3) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572744 6wdg:T (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572745 6wdg:T (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572746 6wdg:U (3.3) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572747 6wdg:V (3.3) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572748 6wdg:W (3.3) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572749 6wdg:X (3.3) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572750 6wdg:Y (3.3) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572751 6wdg:Z (3.3) BS01 rna ? GO:0000028 ... P68679 32612237
    572752 6wdg:Z (3.3) BS02 rna ? GO:0000028 ... P68679 32612237
    572753 6wdg:a (3.3) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572754 6wdg:a (3.3) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572755 6wdg:b (3.3) BS01 rna ? GO:0000027 ... P60422 32612237
    572756 6wdg:b (3.3) BS02 rna ? GO:0000027 ... P60422 32612237
    572757 6wdg:c (3.3) BS01 rna ? GO:0000027 ... P60438 32612237
    572758 6wdg:d (3.3) BS01 rna ? GO:0001070 ... P60723 32612237
    572759 6wdg:e (3.3) BS01 rna ? GO:0000027 ... P62399 32612237
    572760 6wdg:e (3.3) BS02 rna ? GO:0000027 ... P62399 32612237
    572761 6wdg:f (3.3) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572762 6wdg:g (3.3) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572763 6wdg:h (3.3) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572764 6wdg:i (3.3) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572765 6wdg:j (3.3) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572766 6wdg:k (3.3) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572767 6wdg:k (3.3) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572768 6wdg:l (3.3) BS01 rna ? GO:0002181 ... P02413 32612237
    572769 6wdg:m (3.3) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572770 6wdg:m (3.3) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572771 6wdg:n (3.3) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572772 6wdg:o (3.3) BS01 rna ? GO:0002181 ... P0C018 32612237
    572773 6wdg:o (3.3) BS02 rna ? GO:0002181 ... P0C018 32612237
    572774 6wdg:p (3.3) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572775 6wdg:p (3.3) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572776 6wdg:q (3.3) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572777 6wdg:r (3.3) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572778 6wdg:s (3.3) BS01 rna ? GO:0002181 ... P61175 32612237
    572779 6wdg:t (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572780 6wdg:u (3.3) BS01 rna ? GO:0000027 ... P60624 32612237
    572781 6wdg:v (3.3) BS01 rna ? GO:0000027 ... P68919 32612237
    572782 6wdg:v (3.3) BS02 rna ? GO:0000027 ... P68919 32612237
    572783 6wdg:w (3.3) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572784 6wdg:w (3.3) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572785 6wdg:x (3.3) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572786 6wdg:y (3.3) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572787 6wdg:z (3.3) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572788 6wdg:z (3.3) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572789 6wdh:B (4.3) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572790 6wdh:C (4.3) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572791 6wdh:C (4.3) BS02 rna ? GO:0000027 ... P0A7N9 32612237
    572792 6wdh:D (4.3) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572793 6wdh:E (4.3) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572794 6wdh:F (4.3) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572795 6wdh:G (4.3) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572796 6wdh:H (4.3) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572797 6wdh:I (4.3) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572798 6wdh:J (4.3) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572799 6wdh:K (4.3) BS01 rna ? GO:0003735 ... P02358 32612237
    572800 6wdh:L (4.3) BS01 rna ? GO:0003723 ... P02359 32612237

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).