SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    572801 6wdh:L (4.3) BS02 rna ? GO:0003723 ... P02359 32612237
    572802 6wdh:M (4.3) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572803 6wdh:N (4.3) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572804 6wdh:N (4.3) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    572805 6wdh:O (4.3) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572806 6wdh:P (4.3) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572807 6wdh:Q (4.3) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572808 6wdh:R (4.3) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572809 6wdh:S (4.3) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572810 6wdh:T (4.3) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572811 6wdh:T (4.3) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572812 6wdh:U (4.3) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572813 6wdh:V (4.3) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572814 6wdh:W (4.3) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572815 6wdh:X (4.3) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572816 6wdh:Y (4.3) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572817 6wdh:Z (4.3) BS01 rna ? GO:0000028 ... P68679 32612237
    572818 6wdh:Z (4.3) BS02 rna ? GO:0000028 ... P68679 32612237
    572819 6wdh:a (4.3) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572820 6wdh:a (4.3) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572821 6wdh:b (4.3) BS01 rna ? GO:0000027 ... P60422 32612237
    572822 6wdh:b (4.3) BS02 rna ? GO:0000027 ... P60422 32612237
    572823 6wdh:c (4.3) BS01 rna ? GO:0000027 ... P60438 32612237
    572824 6wdh:d (4.3) BS01 rna ? GO:0001070 ... P60723 32612237
    572825 6wdh:e (4.3) BS01 rna ? GO:0000027 ... P62399 32612237
    572826 6wdh:e (4.3) BS02 rna ? GO:0000027 ... P62399 32612237
    572827 6wdh:e (4.3) BS03 rna ? GO:0000027 ... P62399 32612237
    572828 6wdh:f (4.3) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572829 6wdh:g (4.3) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572830 6wdh:h (4.3) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572831 6wdh:i (4.3) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572832 6wdh:j (4.3) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572833 6wdh:k (4.3) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572834 6wdh:k (4.3) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572835 6wdh:l (4.3) BS01 rna ? GO:0002181 ... P02413 32612237
    572836 6wdh:m (4.3) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572837 6wdh:m (4.3) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572838 6wdh:n (4.3) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572839 6wdh:o (4.3) BS01 rna ? GO:0002181 ... P0C018 32612237
    572840 6wdh:o (4.3) BS02 rna ? GO:0002181 ... P0C018 32612237
    572841 6wdh:p (4.3) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572842 6wdh:p (4.3) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572843 6wdh:q (4.3) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572844 6wdh:r (4.3) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572845 6wdh:s (4.3) BS01 rna ? GO:0002181 ... P61175 32612237
    572846 6wdh:t (4.3) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572847 6wdh:u (4.3) BS01 rna ? GO:0000027 ... P60624 32612237
    572848 6wdh:v (4.3) BS01 rna ? GO:0000027 ... P68919 32612237
    572849 6wdh:w (4.3) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572850 6wdh:w (4.3) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572851 6wdh:x (4.3) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572852 6wdh:y (4.3) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572853 6wdh:z (4.3) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572854 6wdi:B (4.0) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572855 6wdi:C (4.0) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572856 6wdi:D (4.0) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572857 6wdi:E (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572858 6wdi:F (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572859 6wdi:G (4.0) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572860 6wdi:H (4.0) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572861 6wdi:I (4.0) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572862 6wdi:J (4.0) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572863 6wdi:K (4.0) BS01 rna ? GO:0003735 ... P02358 32612237
    572864 6wdi:L (4.0) BS01 rna ? GO:0003723 ... P02359 32612237
    572865 6wdi:L (4.0) BS02 rna ? GO:0003723 ... P02359 32612237
    572866 6wdi:M (4.0) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572867 6wdi:N (4.0) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572868 6wdi:O (4.0) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572869 6wdi:P (4.0) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572870 6wdi:Q (4.0) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572871 6wdi:R (4.0) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572872 6wdi:R (4.0) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572873 6wdi:S (4.0) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572874 6wdi:T (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572875 6wdi:T (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572876 6wdi:U (4.0) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572877 6wdi:V (4.0) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572878 6wdi:W (4.0) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572879 6wdi:X (4.0) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572880 6wdi:Y (4.0) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572881 6wdi:Z (4.0) BS01 rna ? GO:0000028 ... P68679 32612237
    572882 6wdi:Z (4.0) BS02 rna ? GO:0000028 ... P68679 32612237
    572883 6wdi:a (4.0) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572884 6wdi:b (4.0) BS01 rna ? GO:0000027 ... P60422 32612237
    572885 6wdi:b (4.0) BS02 rna ? GO:0000027 ... P60422 32612237
    572886 6wdi:c (4.0) BS01 rna ? GO:0000027 ... P60438 32612237
    572887 6wdi:d (4.0) BS01 rna ? GO:0001070 ... P60723 32612237
    572888 6wdi:e (4.0) BS01 rna ? GO:0000027 ... P62399 32612237
    572889 6wdi:e (4.0) BS02 rna ? GO:0000027 ... P62399 32612237
    572890 6wdi:e (4.0) BS03 rna ? GO:0000027 ... P62399 32612237
    572891 6wdi:f (4.0) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572892 6wdi:g (4.0) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572893 6wdi:h (4.0) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572894 6wdi:i (4.0) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572895 6wdi:j (4.0) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572896 6wdi:k (4.0) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572897 6wdi:k (4.0) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572898 6wdi:l (4.0) BS01 rna ? GO:0002181 ... P02413 32612237
    572899 6wdi:m (4.0) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572900 6wdi:m (4.0) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572901 6wdi:m (4.0) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    572902 6wdi:n (4.0) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572903 6wdi:o (4.0) BS01 rna ? GO:0002181 ... P0C018 32612237
    572904 6wdi:o (4.0) BS02 rna ? GO:0002181 ... P0C018 32612237
    572905 6wdi:p (4.0) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572906 6wdi:p (4.0) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572907 6wdi:q (4.0) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572908 6wdi:r (4.0) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572909 6wdi:s (4.0) BS01 rna ? GO:0002181 ... P61175 32612237
    572910 6wdi:t (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572911 6wdi:u (4.0) BS01 rna ? GO:0000027 ... P60624 32612237
    572912 6wdi:v (4.0) BS01 rna ? GO:0000027 ... P68919 32612237
    572913 6wdi:w (4.0) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572914 6wdi:w (4.0) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572915 6wdi:x (4.0) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572916 6wdi:y (4.0) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572917 6wdi:z (4.0) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572918 6wdi:z (4.0) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572919 6wdj:B (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572920 6wdj:C (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572921 6wdj:D (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572922 6wdj:E (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572923 6wdj:F (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572924 6wdj:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572925 6wdj:H (3.7) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572926 6wdj:I (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572927 6wdj:J (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572928 6wdj:K (3.7) BS01 rna ? GO:0003735 ... P02358 32612237
    572929 6wdj:L (3.7) BS01 rna ? GO:0003723 ... P02359 32612237
    572930 6wdj:L (3.7) BS02 rna ? GO:0003723 ... P02359 32612237
    572931 6wdj:L (3.7) BS03 rna ? GO:0003723 ... P02359 32612237
    572932 6wdj:M (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    572933 6wdj:N (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    572934 6wdj:N (3.7) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    572935 6wdj:O (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    572936 6wdj:P (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    572937 6wdj:Q (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    572938 6wdj:R (3.7) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    572939 6wdj:R (3.7) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    572940 6wdj:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 32612237
    572941 6wdj:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    572942 6wdj:T (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    572943 6wdj:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    572944 6wdj:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 32612237
    572945 6wdj:W (3.7) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    572946 6wdj:X (3.7) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    572947 6wdj:Y (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    572948 6wdj:Z (3.7) BS01 rna ? GO:0000028 ... P68679 32612237
    572949 6wdj:Z (3.7) BS02 rna ? GO:0000028 ... P68679 32612237
    572950 6wdj:a (3.7) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    572951 6wdj:a (3.7) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    572952 6wdj:b (3.7) BS01 rna ? GO:0000027 ... P60422 32612237
    572953 6wdj:b (3.7) BS02 rna ? GO:0000027 ... P60422 32612237
    572954 6wdj:c (3.7) BS01 rna ? GO:0000027 ... P60438 32612237
    572955 6wdj:d (3.7) BS01 rna ? GO:0001070 ... P60723 32612237
    572956 6wdj:e (3.7) BS01 rna ? GO:0000027 ... P62399 32612237
    572957 6wdj:e (3.7) BS02 rna ? GO:0000027 ... P62399 32612237
    572958 6wdj:e (3.7) BS03 rna ? GO:0000027 ... P62399 32612237
    572959 6wdj:f (3.7) BS01 rna ? GO:0000027 ... P0AG55 32612237
    572960 6wdj:g (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    572961 6wdj:h (3.7) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    572962 6wdj:i (3.7) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    572963 6wdj:j (3.7) BS01 rna ? GO:0002181 ... P0AA10 32612237
    572964 6wdj:k (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    572965 6wdj:k (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    572966 6wdj:l (3.7) BS01 rna ? GO:0002181 ... P02413 32612237
    572967 6wdj:m (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    572968 6wdj:m (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    572969 6wdj:m (3.7) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    572970 6wdj:n (3.7) BS01 rna ? GO:0000027 ... P0AG44 32612237
    572971 6wdj:o (3.7) BS01 rna ? GO:0002181 ... P0C018 32612237
    572972 6wdj:o (3.7) BS02 rna ? GO:0002181 ... P0C018 32612237
    572973 6wdj:p (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    572974 6wdj:p (3.7) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    572975 6wdj:q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    572976 6wdj:r (3.7) BS01 rna ? GO:0002181 ... P0AG48 32612237
    572977 6wdj:s (3.7) BS01 rna ? GO:0002181 ... P61175 32612237
    572978 6wdj:t (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    572979 6wdj:u (3.7) BS01 rna ? GO:0000027 ... P60624 32612237
    572980 6wdj:v (3.7) BS01 rna ? GO:0000027 ... P68919 32612237
    572981 6wdj:w (3.7) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    572982 6wdj:w (3.7) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    572983 6wdj:x (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    572984 6wdj:y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    572985 6wdj:z (3.7) BS01 rna ? GO:0000027 ... P0AG51 32612237
    572986 6wdj:z (3.7) BS02 rna ? GO:0000027 ... P0AG51 32612237
    572987 6wdk:B (3.6) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    572988 6wdk:C (3.6) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    572989 6wdk:D (3.6) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    572990 6wdk:E (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    572991 6wdk:F (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    572992 6wdk:G (3.6) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    572993 6wdk:H (3.6) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    572994 6wdk:I (3.6) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    572995 6wdk:J (3.6) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    572996 6wdk:K (3.6) BS01 rna ? GO:0003735 ... P02358 32612237
    572997 6wdk:L (3.6) BS01 rna ? GO:0003723 ... P02359 32612237
    572998 6wdk:L (3.6) BS02 rna ? GO:0003723 ... P02359 32612237
    572999 6wdk:M (3.6) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    573000 6wdk:N (3.6) BS01 rna ? GO:0000049 ... P0A7X3 32612237

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).