SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    573001 6wdk:O (3.6) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    573002 6wdk:P (3.6) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    573003 6wdk:Q (3.6) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    573004 6wdk:R (3.6) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    573005 6wdk:R (3.6) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    573006 6wdk:S (3.6) BS01 rna ? GO:0000028 ... P0AG59 32612237
    573007 6wdk:T (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    573008 6wdk:T (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    573009 6wdk:U (3.6) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    573010 6wdk:V (3.6) BS01 rna ? GO:0000028 ... P0AG63 32612237
    573011 6wdk:W (3.6) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    573012 6wdk:X (3.6) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    573013 6wdk:Y (3.6) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    573014 6wdk:Z (3.6) BS01 rna ? GO:0000028 ... P68679 32612237
    573015 6wdk:Z (3.6) BS02 rna ? GO:0000028 ... P68679 32612237
    573016 6wdk:a (3.6) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    573017 6wdk:a (3.6) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    573018 6wdk:b (3.6) BS01 rna ? GO:0000027 ... P60422 32612237
    573019 6wdk:b (3.6) BS02 rna ? GO:0000027 ... P60422 32612237
    573020 6wdk:c (3.6) BS01 rna ? GO:0000027 ... P60438 32612237
    573021 6wdk:d (3.6) BS01 rna ? GO:0001070 ... P60723 32612237
    573022 6wdk:e (3.6) BS01 rna ? GO:0000027 ... P62399 32612237
    573023 6wdk:e (3.6) BS02 rna ? GO:0000027 ... P62399 32612237
    573024 6wdk:e (3.6) BS03 rna ? GO:0000027 ... P62399 32612237
    573025 6wdk:f (3.6) BS01 rna ? GO:0000027 ... P0AG55 32612237
    573026 6wdk:g (3.6) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    573027 6wdk:h (3.6) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    573028 6wdk:i (3.6) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    573029 6wdk:j (3.6) BS01 rna ? GO:0002181 ... P0AA10 32612237
    573030 6wdk:k (3.6) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    573031 6wdk:k (3.6) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    573032 6wdk:l (3.6) BS01 rna ? GO:0002181 ... P02413 32612237
    573033 6wdk:m (3.6) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    573034 6wdk:m (3.6) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    573035 6wdk:n (3.6) BS01 rna ? GO:0000027 ... P0AG44 32612237
    573036 6wdk:o (3.6) BS01 rna ? GO:0002181 ... P0C018 32612237
    573037 6wdk:o (3.6) BS02 rna ? GO:0002181 ... P0C018 32612237
    573038 6wdk:p (3.6) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    573039 6wdk:p (3.6) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    573040 6wdk:q (3.6) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    573041 6wdk:r (3.6) BS01 rna ? GO:0002181 ... P0AG48 32612237
    573042 6wdk:s (3.6) BS01 rna ? GO:0002181 ... P61175 32612237
    573043 6wdk:t (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    573044 6wdk:u (3.6) BS01 rna ? GO:0000027 ... P60624 32612237
    573045 6wdk:v (3.6) BS01 rna ? GO:0000027 ... P68919 32612237
    573046 6wdk:w (3.6) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    573047 6wdk:w (3.6) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    573048 6wdk:x (3.6) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    573049 6wdk:y (3.6) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    573050 6wdk:z (3.6) BS01 rna ? GO:0000027 ... P0AG51 32612237
    573051 6wdk:z (3.6) BS02 rna ? GO:0000027 ... P0AG51 32612237
    573052 6wdl:B (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    573053 6wdl:C (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    573054 6wdl:C (3.7) BS02 rna ? GO:0000027 ... P0A7N9 32612237
    573055 6wdl:D (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    573056 6wdl:E (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    573057 6wdl:F (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    573058 6wdl:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    573059 6wdl:H (3.7) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    573060 6wdl:I (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    573061 6wdl:J (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    573062 6wdl:K (3.7) BS01 rna ? GO:0003735 ... P02358 32612237
    573063 6wdl:L (3.7) BS01 rna ? GO:0003723 ... P02359 32612237
    573064 6wdl:L (3.7) BS02 rna ? GO:0003723 ... P02359 32612237
    573065 6wdl:M (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    573066 6wdl:N (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    573067 6wdl:N (3.7) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    573068 6wdl:O (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    573069 6wdl:P (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    573070 6wdl:Q (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    573071 6wdl:R (3.7) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    573072 6wdl:R (3.7) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    573073 6wdl:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 32612237
    573074 6wdl:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    573075 6wdl:T (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    573076 6wdl:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    573077 6wdl:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 32612237
    573078 6wdl:W (3.7) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    573079 6wdl:X (3.7) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    573080 6wdl:Y (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    573081 6wdl:Z (3.7) BS01 rna ? GO:0000028 ... P68679 32612237
    573082 6wdl:a (3.7) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    573083 6wdl:a (3.7) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    573084 6wdl:b (3.7) BS01 rna ? GO:0000027 ... P60422 32612237
    573085 6wdl:b (3.7) BS02 rna ? GO:0000027 ... P60422 32612237
    573086 6wdl:c (3.7) BS01 rna ? GO:0000027 ... P60438 32612237
    573087 6wdl:d (3.7) BS01 rna ? GO:0001070 ... P60723 32612237
    573088 6wdl:e (3.7) BS01 rna ? GO:0000027 ... P62399 32612237
    573089 6wdl:e (3.7) BS02 rna ? GO:0000027 ... P62399 32612237
    573090 6wdl:e (3.7) BS03 rna ? GO:0000027 ... P62399 32612237
    573091 6wdl:f (3.7) BS01 rna ? GO:0000027 ... P0AG55 32612237
    573092 6wdl:g (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    573093 6wdl:h (3.7) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    573094 6wdl:i (3.7) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    573095 6wdl:j (3.7) BS01 rna ? GO:0002181 ... P0AA10 32612237
    573096 6wdl:k (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    573097 6wdl:k (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    573098 6wdl:l (3.7) BS01 rna ? GO:0002181 ... P02413 32612237
    573099 6wdl:m (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    573100 6wdl:m (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    573101 6wdl:m (3.7) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    573102 6wdl:n (3.7) BS01 rna ? GO:0000027 ... P0AG44 32612237
    573103 6wdl:o (3.7) BS01 rna ? GO:0002181 ... P0C018 32612237
    573104 6wdl:o (3.7) BS02 rna ? GO:0002181 ... P0C018 32612237
    573105 6wdl:p (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    573106 6wdl:p (3.7) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    573107 6wdl:q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    573108 6wdl:r (3.7) BS01 rna ? GO:0002181 ... P0AG48 32612237
    573109 6wdl:s (3.7) BS01 rna ? GO:0002181 ... P61175 32612237
    573110 6wdl:t (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    573111 6wdl:u (3.7) BS01 rna ? GO:0000027 ... P60624 32612237
    573112 6wdl:v (3.7) BS01 rna ? GO:0000027 ... P68919 32612237
    573113 6wdl:v (3.7) BS02 rna ? GO:0000027 ... P68919 32612237
    573114 6wdl:w (3.7) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    573115 6wdl:w (3.7) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    573116 6wdl:x (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    573117 6wdl:x (3.7) BS02 rna ? GO:0000027 ... P0A7M2 32612237
    573118 6wdl:y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    573119 6wdl:z (3.7) BS01 rna ? GO:0000027 ... P0AG51 32612237
    573120 6wdl:z (3.7) BS02 rna ? GO:0000027 ... P0AG51 32612237
    573121 6wdm:B (3.6) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    573122 6wdm:C (3.6) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    573123 6wdm:D (3.6) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    573124 6wdm:E (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    573125 6wdm:F (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    573126 6wdm:G (3.6) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    573127 6wdm:H (3.6) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    573128 6wdm:I (3.6) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    573129 6wdm:J (3.6) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    573130 6wdm:K (3.6) BS01 rna ? GO:0003735 ... P02358 32612237
    573131 6wdm:L (3.6) BS01 rna ? GO:0003723 ... P02359 32612237
    573132 6wdm:L (3.6) BS02 rna ? GO:0003723 ... P02359 32612237
    573133 6wdm:L (3.6) BS03 rna ? GO:0003723 ... P02359 32612237
    573134 6wdm:M (3.6) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    573135 6wdm:N (3.6) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    573136 6wdm:N (3.6) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    573137 6wdm:O (3.6) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    573138 6wdm:P (3.6) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    573139 6wdm:Q (3.6) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    573140 6wdm:R (3.6) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    573141 6wdm:R (3.6) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    573142 6wdm:S (3.6) BS01 rna ? GO:0000028 ... P0AG59 32612237
    573143 6wdm:T (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    573144 6wdm:T (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    573145 6wdm:U (3.6) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    573146 6wdm:V (3.6) BS01 rna ? GO:0000028 ... P0AG63 32612237
    573147 6wdm:W (3.6) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    573148 6wdm:X (3.6) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    573149 6wdm:Y (3.6) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    573150 6wdm:Z (3.6) BS01 rna ? GO:0000028 ... P68679 32612237
    573151 6wdm:a (3.6) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    573152 6wdm:a (3.6) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    573153 6wdm:b (3.6) BS01 rna ? GO:0000027 ... P60422 32612237
    573154 6wdm:b (3.6) BS02 rna ? GO:0000027 ... P60422 32612237
    573155 6wdm:c (3.6) BS01 rna ? GO:0000027 ... P60438 32612237
    573156 6wdm:d (3.6) BS01 rna ? GO:0001070 ... P60723 32612237
    573157 6wdm:e (3.6) BS01 rna ? GO:0000027 ... P62399 32612237
    573158 6wdm:e (3.6) BS02 rna ? GO:0000027 ... P62399 32612237
    573159 6wdm:e (3.6) BS03 rna ? GO:0000027 ... P62399 32612237
    573160 6wdm:f (3.6) BS01 rna ? GO:0000027 ... P0AG55 32612237
    573161 6wdm:g (3.6) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    573162 6wdm:h (3.6) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    573163 6wdm:i (3.6) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    573164 6wdm:j (3.6) BS01 rna ? GO:0002181 ... P0AA10 32612237
    573165 6wdm:k (3.6) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    573166 6wdm:k (3.6) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    573167 6wdm:l (3.6) BS01 rna ? GO:0002181 ... P02413 32612237
    573168 6wdm:m (3.6) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    573169 6wdm:m (3.6) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    573170 6wdm:m (3.6) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    573171 6wdm:n (3.6) BS01 rna ? GO:0000027 ... P0AG44 32612237
    573172 6wdm:o (3.6) BS01 rna ? GO:0002181 ... P0C018 32612237
    573173 6wdm:o (3.6) BS02 rna ? GO:0002181 ... P0C018 32612237
    573174 6wdm:p (3.6) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    573175 6wdm:p (3.6) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    573176 6wdm:q (3.6) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    573177 6wdm:r (3.6) BS01 rna ? GO:0002181 ... P0AG48 32612237
    573178 6wdm:s (3.6) BS01 rna ? GO:0002181 ... P61175 32612237
    573179 6wdm:t (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    573180 6wdm:u (3.6) BS01 rna ? GO:0000027 ... P60624 32612237
    573181 6wdm:v (3.6) BS01 rna ? GO:0000027 ... P68919 32612237
    573182 6wdm:w (3.6) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    573183 6wdm:w (3.6) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    573184 6wdm:x (3.6) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    573185 6wdm:y (3.6) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    573186 6wdm:z (3.6) BS01 rna ? GO:0000027 ... P0AG51 32612237
    573187 6wdm:z (3.6) BS02 rna ? GO:0000027 ... P0AG51 32612237
    573188 6wdr:A (3.7) BS01 rna ? GO:0003735 ... P32905 33219089
    573189 6wdr:C (3.7) BS01 rna ? GO:0003723 ... P25443 33219089
    573190 6wdr:D (3.7) BS01 rna ? GO:0000054 ... P05750 33219089
    573191 6wdr:E (3.7) BS01 rna ? GO:0002181 ... P0CX35 33219089
    573192 6wdr:F (3.7) BS01 rna ? GO:0000028 ... P26783 33219089
    573193 6wdr:G (3.7) BS01 rna ? GO:0000462 ... P0CX37 33219089
    573194 6wdr:H (3.7) BS01 rna ? GO:0002181 ... P26786 33219089
    573195 6wdr:I (3.7) BS01 rna ? GO:0000462 ... P0CX39 33219089
    573196 6wdr:J (3.7) BS01 rna ? GO:0000462 ... O13516 33219089
    573197 6wdr:K (3.7) BS01 rna ? GO:0000054 ... Q08745 33219089
    573198 6wdr:L (3.7) BS01 rna ? GO:0000028 ... P0CX47 33219089
    573199 6wdr:M (3.7) BS01 rna ? GO:0003735 ... P48589 33219089
    573200 6wdr:N (3.7) BS01 rna ? GO:0000462 ... P05756 33219089

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).