SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    573601 6wgz:B (2.2) BS01 peptide ? GO:0042981 ... A7LM80 N/A
    573602 6wh0:A (1.99) BS01 peptide ? GO:0008643 ... A7LM80
    C3SHQ8
    32776134
    573603 6wh0:A (1.99) BS02 GLC ? GO:0008643 ... A7LM80
    C3SHQ8
    32776134
    573604 6wh0:A (1.99) BS03 GLC ? GO:0008643 ... A7LM80
    C3SHQ8
    32776134
    573605 6wh0:A (1.99) BS04 GLC ? GO:0008643 ... A7LM80
    C3SHQ8
    32776134
    573606 6wh3:1 (2.96) BS01 CA N/A N/A N/A 32747554
    573607 6wh3:2 (2.96) BS01 CA N/A N/A N/A 32747554
    573608 6wh3:3 (2.96) BS01 CA N/A N/A N/A 32747554
    573609 6wh3:4 (2.96) BS01 CA N/A N/A N/A 32747554
    573610 6wh3:5 (2.96) BS01 CA N/A N/A N/A 32747554
    573611 6wh3:6 (2.96) BS01 CA N/A N/A N/A 32747554
    573612 6wh3:7 (2.96) BS01 CA N/A N/A N/A 32747554
    573613 6wh3:8 (2.96) BS01 CA N/A N/A N/A 32747554
    573614 6wh3:A (2.96) BS01 CA N/A N/A N/A 32747554
    573615 6wh3:B (2.96) BS01 CA N/A N/A N/A 32747554
    573616 6wh3:C (2.96) BS01 CA N/A N/A N/A 32747554
    573617 6wh3:D (2.96) BS01 CA N/A N/A N/A 32747554
    573618 6wh3:E (2.96) BS01 CA N/A N/A N/A 32747554
    573619 6wh3:F (2.96) BS01 CA N/A N/A N/A 32747554
    573620 6wh3:G (2.96) BS01 CA N/A N/A N/A 32747554
    573621 6wh3:H (2.96) BS01 CA N/A N/A N/A 32747554
    573622 6wh3:I (2.96) BS01 CA N/A N/A N/A 32747554
    573623 6wh3:J (2.96) BS01 CA N/A N/A N/A 32747554
    573624 6wh3:K (2.96) BS01 CA N/A N/A N/A 32747554
    573625 6wh3:L (2.96) BS01 CA N/A N/A N/A 32747554
    573626 6wh3:M (2.96) BS01 CA N/A N/A N/A 32747554
    573627 6wh3:N (2.96) BS01 CA N/A N/A N/A 32747554
    573628 6wh3:O (2.96) BS01 CA N/A N/A N/A 32747554
    573629 6wh3:P (2.96) BS01 CA N/A N/A N/A 32747554
    573630 6wh3:Q (2.96) BS01 CA N/A N/A N/A 32747554
    573631 6wh3:R (2.96) BS01 CA N/A N/A N/A 32747554
    573632 6wh3:S (2.96) BS01 CA N/A N/A N/A 32747554
    573633 6wh3:T (2.96) BS01 CA N/A N/A N/A 32747554
    573634 6wh3:U (2.96) BS01 CA N/A N/A N/A 32747554
    573635 6wh3:V (2.96) BS01 CA N/A N/A N/A 32747554
    573636 6wh3:W (2.96) BS01 CA N/A N/A N/A 32747554
    573637 6wh3:X (2.96) BS01 CA N/A N/A N/A 32747554
    573638 6wh3:Y (2.96) BS01 CA N/A N/A N/A 32747554
    573639 6wh3:Z (2.96) BS01 CA N/A N/A N/A 32747554
    573640 6wh3:a (2.96) BS01 CA N/A N/A N/A 32747554
    573641 6wh3:b (2.96) BS01 CA N/A N/A N/A 32747554
    573642 6wh3:c (2.96) BS01 CA N/A N/A N/A 32747554
    573643 6wh3:d (2.96) BS01 CA N/A N/A N/A 32747554
    573644 6wh3:e (2.96) BS01 CA N/A N/A N/A 32747554
    573645 6wh3:f (2.96) BS01 CA N/A N/A N/A 32747554
    573646 6wh3:g (2.96) BS01 CA N/A N/A N/A 32747554
    573647 6wh3:h (2.96) BS01 CA N/A N/A N/A 32747554
    573648 6wh3:i (2.96) BS01 CA N/A N/A N/A 32747554
    573649 6wh3:j (2.96) BS01 CA N/A N/A N/A 32747554
    573650 6wh3:k (2.96) BS01 CA N/A N/A N/A 32747554
    573651 6wh3:l (2.96) BS01 CA N/A N/A N/A 32747554
    573652 6wh3:m (2.96) BS01 CA N/A N/A N/A 32747554
    573653 6wh3:n (2.96) BS01 CA N/A N/A N/A 32747554
    573654 6wh3:o (2.96) BS01 CA N/A N/A N/A 32747554
    573655 6wh3:p (2.96) BS01 CA N/A N/A N/A 32747554
    573656 6wh3:q (2.96) BS01 CA N/A N/A N/A 32747554
    573657 6wh3:r (2.96) BS01 CA N/A N/A N/A 32747554
    573658 6wh3:s (2.96) BS01 CA N/A N/A N/A 32747554
    573659 6wh3:t (2.96) BS01 CA N/A N/A N/A 32747554
    573660 6wh3:u (2.96) BS01 CA N/A N/A N/A 32747554
    573661 6wh3:v (2.96) BS01 CA N/A N/A N/A 32747554
    573662 6wh3:w (2.96) BS01 CA N/A N/A N/A 32747554
    573663 6wh3:x (2.96) BS01 CA N/A N/A N/A 32747554
    573664 6wh3:y (2.96) BS01 CA N/A N/A N/A 32747554
    573665 6wh3:z (2.96) BS01 CA N/A N/A N/A 32747554
    573666 6wh4:A (3.4) BS01 89F ? GO:0004930 ... P0ABE7
    P28223
    N/A
    573667 6wh4:A (3.4) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223
    N/A
    573668 6wh4:B (3.4) BS01 89F ? GO:0004930 ... P0ABE7
    P28223
    N/A
    573669 6wh4:C (3.4) BS01 89F ? GO:0004930 ... P0ABE7
    P28223
    N/A
    573670 6wh4:C (3.4) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223
    N/A
    573671 6wh4:C (3.4) BS03 NDS ? GO:0004930 ... P0ABE7
    P28223
    N/A
    573672 6wh5:A (1.866) BS01 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573673 6wh5:A (1.866) BS02 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573674 6wh5:A (1.866) BS03 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573675 6wh5:A (1.866) BS04 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573676 6wh5:B (1.866) BS01 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573677 6wh5:B (1.866) BS02 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573678 6wh5:B (1.866) BS03 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573679 6wh5:B (1.866) BS04 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573680 6wh5:C (1.866) BS01 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573681 6wh5:C (1.866) BS02 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573682 6wh5:C (1.866) BS03 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573683 6wh5:C (1.866) BS04 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    573684 6wh6:A (2.25) BS01 FAD 1.8.5.8 GO:0005515 ... Q9Y6N5 32787249
    573685 6wh6:A (2.25) BS02 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 32787249
    573686 6wh6:A (2.25) BS03 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 32787249
    573687 6wh6:B (2.25) BS01 FAD 1.8.5.8 GO:0005515 ... Q9Y6N5 32787249
    573688 6wh6:B (2.25) BS02 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 32787249
    573689 6wh8:A (1.729) BS01 peptide 2.1.1.244 GO:0005515 ... Q9BV86 32689795
    573690 6wh8:A (1.729) BS02 SAH 2.1.1.244 GO:0005515 ... Q9BV86 32689795
    573691 6wh8:B (1.729) BS01 peptide 2.1.1.244 GO:0005515 ... Q9BV86 32689795
    573692 6wh8:B (1.729) BS02 SAH 2.1.1.244 GO:0005515 ... Q9BV86 32689795
    573693 6wha:A (3.36) BS01 U0G ? GO:0004930 ... P0ABE7
    P28223
    N/A
    573694 6whc:R (3.4) BS01 peptide ? GO:0004888 ... P47871 32371397
    573695 6whd:A (1.99) BS01 KFS ? GO:0003756 ... P0AEG4 32529824 MOAD: Kd=490uM
    BindingDB: Kd=490000nM
    573696 6whd:A (1.99) BS02 KFS ? GO:0003756 ... P0AEG4 32529824 MOAD: Kd=490uM
    BindingDB: Kd=490000nM
    573697 6whd:B (1.99) BS01 KFS ? GO:0003756 ... P0AEG4 32529824 MOAD: Kd=490uM
    BindingDB: Kd=490000nM
    573698 6whe:A (1.73) BS01 GTP 3.6.5.2 GO:0003924 ... P61006 33887226
    573699 6whe:A (1.73) BS02 MG 3.6.5.2 GO:0003924 ... P61006 33887226
    573700 6whe:B (1.73) BS01 GTP 3.6.5.2 GO:0003924 ... P61006 33887226
    573701 6whe:B (1.73) BS02 MG 3.6.5.2 GO:0003924 ... P61006 33887226
    573702 6whf:A (1.4) BS01 9EP 3.5.2.6 GO:0008800 ... P00811 N/A
    573703 6whf:B (1.4) BS01 9EP 3.5.2.6 GO:0008800 ... P00811 N/A
    573704 6whg:A (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    573705 6whg:A (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    573706 6whg:A (3.1) BS03 PWE ? GO:0000324 ... Q12324 34453887
    573707 6whg:B (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    573708 6whg:B (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    573709 6whg:B (3.1) BS03 PWE ? GO:0000324 ... Q12324 34453887
    573710 6whg:C (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    573711 6whg:C (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    573712 6whg:C (3.1) BS03 PWE ? GO:0000324 ... Q12324 34453887
    573713 6whg:D (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    573714 6whg:D (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    573715 6whg:D (3.1) BS03 PWE ? GO:0000324 ... Q12324 34453887
    573716 6whi:A (4.2) BS01 rna ? GO:0005515 ... Q02ML9 32483187
    573717 6whi:B (4.2) BS01 rna ? GO:0005515 ... Q02MM0 32483187
    573718 6whi:C (4.2) BS01 rna ? GO:0005515 ... Q02MM1 32483187
    573719 6whi:D (4.2) BS01 rna ? GO:0005515 ... Q02MM1 32483187
    573720 6whi:E (4.2) BS01 rna ? GO:0005515 ... Q02MM1 32483187
    573721 6whi:F (4.2) BS01 rna ? GO:0005515 ... Q02MM1 32483187
    573722 6whi:G (4.2) BS01 rna ? GO:0005515 ... Q02MM1 32483187
    573723 6whi:H (4.2) BS01 rna ? GO:0005515 ... Q02MM1 32483187
    573724 6whi:J (4.2) BS01 dna N/A N/A N/A 32483187
    573725 6whi:L (4.2) BS01 rna 3.1.-.- GO:0003723 ... Q02MM2 32483187
    573726 6whm:A (1.92) BS01 dna ? GO:0003723 ... C6H0Y9 33469660
    573727 6whm:A (1.92) BS02 MG ? GO:0003723 ... C6H0Y9 33469660
    573728 6whm:A (1.92) BS03 MN ? GO:0003723 ... C6H0Y9 33469660
    573729 6whm:A (1.92) BS04 MG ? GO:0003723 ... C6H0Y9 33469660
    573730 6whn:A (1.54) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573731 6whn:A (1.54) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573732 6whn:B (1.54) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573733 6whn:B (1.54) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573734 6whn:C (1.54) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573735 6whn:C (1.54) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573736 6who:A (2.2) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573737 6who:A (2.2) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573738 6who:B (2.2) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573739 6who:B (2.2) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573740 6who:C (2.2) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573741 6who:C (2.2) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573742 6whq:A (2.35) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573743 6whq:A (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573744 6whq:B (2.35) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573745 6whq:B (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573746 6whq:C (2.35) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573747 6whq:C (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573748 6whu:A (3.93) BS01 QGM ? GO:0005216 ... P35439 32610085 BindingDB: Ki=6.3nM
    573749 6whu:B (3.93) BS01 QGP ? GO:0005216 ... Q00960 32610085
    573750 6whu:C (3.93) BS01 QGM ? GO:0005216 ... P35439 32610085 BindingDB: Ki=6.3nM
    573751 6whu:D (3.93) BS01 QGP ? GO:0005216 ... Q00960 32610085
    573752 6whv:B (4.05) BS01 QGP ? GO:0005216 ... Q00960 32610085
    573753 6whv:C (4.05) BS01 QGM ? GO:0005216 ... P35439 32610085 BindingDB: Ki=6.3nM
    573754 6whv:D (4.05) BS01 QGP ? GO:0005216 ... Q00960 32610085
    573755 6whw:B (4.09) BS01 QGP ? GO:0005216 ... Q00960 32610085
    573756 6whw:D (4.09) BS01 QGP ? GO:0005216 ... Q00960 32610085
    573757 6whx:B (4.09) BS01 QGP ? GO:0005216 ... Q00960 32610085
    573758 6whx:D (4.09) BS01 QGP ? GO:0005216 ... Q00960 32610085
    573759 6why:A (4.03) BS01 QGM ? GO:0005216 ... P35439 32610085 BindingDB: Ki=6.3nM
    573760 6why:C (4.03) BS01 QGM ? GO:0005216 ... P35439 32610085 BindingDB: Ki=6.3nM
    573761 6whz:A (2.9) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573762 6whz:A (2.9) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573763 6whz:B (2.9) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573764 6whz:B (2.9) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573765 6whz:C (2.9) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573766 6whz:C (2.9) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573767 6wi0:A (4.27) BS01 QGM ? GO:0005216 ... P35439 32610085 BindingDB: Ki=6.3nM
    573768 6wi0:C (4.27) BS01 QGM ? GO:0005216 ... P35439 32610085 BindingDB: Ki=6.3nM
    573769 6wi2:A (1.95) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 N/A
    573770 6wi2:B (1.95) BS01 EDT ? GO:0005515 ... Q9HD34 N/A
    573771 6wi2:B (1.95) BS02 8Q1 ? GO:0005515 ... Q9HD34 N/A
    573772 6wi3:A (2.35) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573773 6wi3:A (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573774 6wi3:B (2.35) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573775 6wi3:B (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573776 6wi3:C (2.35) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573777 6wi3:C (2.35) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0004407 ... Q92769 34099674
    573778 6wi4:A (1.57) BS01 peptide N/A GO:0004197 ... N/A 32788218
    573779 6wi4:B (1.57) BS01 peptide N/A GO:0004197 ... N/A 32788218
    573780 6wi4:B (1.57) BS02 peptide N/A GO:0004197 ... N/A 32788218
    573781 6wi7:A (1.702) BS01 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573782 6wi7:A (1.702) BS02 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573783 6wi7:A (1.702) BS03 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573784 6wi7:A (1.702) BS04 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573785 6wi8:A (3.092) BS01 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573786 6wi8:A (3.092) BS02 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573787 6wi8:A (3.092) BS03 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573788 6wi8:A (3.092) BS04 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573789 6wi8:B (3.092) BS01 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573790 6wi8:B (3.092) BS02 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573791 6wi8:B (3.092) BS03 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573792 6wi8:B (3.092) BS04 ZN 2.3.2.27
    5.-.-.-
    N/A P35226
    Q99496
    34155404
    573793 6wi9:R (4.3) BS01 peptide ? GO:0004888 ... P47872 32811827
    573794 6wib:A (2.55) BS01 BMA ? N/A P01861 34497355
    573795 6wib:A (2.55) BS02 ZN ? N/A P01861 34497355
    573796 6wic:A (1.55) BS01 dna 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    573797 6wic:A (1.55) BS02 dna 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    573798 6wic:A (1.55) BS03 dna 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    573799 6wic:A (1.55) BS04 dna 2.7.7.7 GO:0003677 ... Q9NP87 32963245
    573800 6wic:A (1.55) BS05 DUP 2.7.7.7 GO:0003677 ... Q9NP87 32963245

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).