SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    578201 6x9q:c (4.8) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    578202 6x9q:e (4.8) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    578203 6x9q:f (4.8) BS01 rna ? GO:0000027 ... P0AG51 32820061
    578204 6x9q:f (4.8) BS02 rna ? GO:0000027 ... P0AG51 32820061
    578205 6x9q:g (4.8) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    578206 6x9q:h (4.8) BS01 rna ? GO:0000027 ... P60422 32820061
    578207 6x9q:i (4.8) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    578208 6x9q:j (4.8) BS01 rna ? GO:0000027 ... P60438 32820061
    578209 6x9q:k (4.8) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    578210 6x9q:l (4.8) BS01 rna ? GO:0001070 ... P60723 32820061
    578211 6x9q:m (4.8) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    578212 6x9q:n (4.8) BS01 rna ? GO:0000027 ... P62399 32820061
    578213 6x9q:n (4.8) BS02 rna ? GO:0000027 ... P62399 32820061
    578214 6x9q:o (4.8) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    578215 6x9q:p (4.8) BS01 rna ? GO:0000027 ... P0AG55 32820061
    578216 6x9q:q (4.8) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    578217 6x9q:r (4.8) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    578218 6x9q:s (4.8) BS01 rna ? GO:0002181 ... P0AA10 32820061
    578219 6x9q:t (4.8) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    578220 6x9q:t (4.8) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    578221 6x9q:u (4.8) BS01 rna ? GO:0002181 ... P02413 32820061
    578222 6x9q:v (4.8) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    578223 6x9q:v (4.8) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    578224 6x9q:w (4.8) BS01 rna ? GO:0000027 ... P0AG44 32820061
    578225 6x9q:x (4.8) BS01 rna ? GO:0002181 ... P0C018 32820061
    578226 6x9q:x (4.8) BS02 rna ? GO:0002181 ... P0C018 32820061
    578227 6x9q:y (4.8) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    578228 6x9q:z (4.8) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    578229 6xa1:LA (2.8) BS01 rna ? GO:0002181 ... P62917 33009412
    578230 6xa1:LA (2.8) BS02 rna ? GO:0002181 ... P62917 33009412
    578231 6xa1:LB (2.8) BS01 rna ? GO:0002181 ... P39023 33009412
    578232 6xa1:LC (2.8) BS01 rna ? GO:0003735 ... P36578 33009412
    578233 6xa1:LC (2.8) BS02 rna ? GO:0003735 ... P36578 33009412
    578234 6xa1:LC (2.8) BS03 peptide ? GO:0003735 ... P36578 33009412
    578235 6xa1:LD (2.8) BS01 rna ? GO:0000027 ... P46777 33009412
    578236 6xa1:LD (2.8) BS02 rna ? GO:0000027 ... P46777 33009412
    578237 6xa1:LE (2.8) BS01 rna ? GO:0003735 ... Q02878 33009412
    578238 6xa1:LF (2.8) BS01 rna ? GO:0000463 ... P18124 33009412
    578239 6xa1:LF (2.8) BS02 rna ? GO:0000463 ... P18124 33009412
    578240 6xa1:LG (2.8) BS01 rna ? GO:0000470 ... P62424 33009412
    578241 6xa1:LG (2.8) BS02 rna ? GO:0000470 ... P62424 33009412
    578242 6xa1:LH (2.8) BS01 rna ? GO:0002181 ... P32969 33009412
    578243 6xa1:LI (2.8) BS01 rna ? GO:0000027 ... Q96L21 33009412
    578244 6xa1:LI (2.8) BS02 rna ? GO:0000027 ... Q96L21 33009412
    578245 6xa1:LJ (2.8) BS01 rna ? GO:0000027 ... P62913 33009412
    578246 6xa1:LJ (2.8) BS02 rna ? GO:0000027 ... P62913 33009412
    578247 6xa1:LJ (2.8) BS03 rna ? GO:0000027 ... P62913 33009412
    578248 6xa1:LL (2.8) BS01 rna ? GO:0001824 ... P26373 33009412
    578249 6xa1:LL (2.8) BS02 rna ? GO:0001824 ... P26373 33009412
    578250 6xa1:LM (2.8) BS01 rna ? GO:0003723 ... P50914 33009412
    578251 6xa1:LN (2.8) BS01 rna ? GO:0002181 ... P61313 33009412
    578252 6xa1:LN (2.8) BS02 rna ? GO:0002181 ... P61313 33009412
    578253 6xa1:LO (2.8) BS01 rna ? GO:0002181 ... P40429 33009412
    578254 6xa1:LP (2.8) BS01 rna ? GO:0003735 ... P18621 33009412
    578255 6xa1:LP (2.8) BS02 rna ? GO:0003735 ... P18621 33009412
    578256 6xa1:LQ (2.8) BS01 rna ? GO:0002181 ... Q07020 33009412
    578257 6xa1:LR (2.8) BS01 rna ? GO:0002181 ... P84098 33009412
    578258 6xa1:LR (2.8) BS02 rna ? GO:0002181 ... P84098 33009412
    578259 6xa1:LS (2.8) BS01 rna ? GO:0002181 ... Q02543 33009412
    578260 6xa1:LS (2.8) BS02 rna ? GO:0002181 ... Q02543 33009412
    578261 6xa1:LT (2.8) BS01 rna ? GO:0002181 ... P46778 33009412
    578262 6xa1:LT (2.8) BS02 rna ? GO:0002181 ... P46778 33009412
    578263 6xa1:LU (2.8) BS01 rna ? GO:0003735 ... Q7Z4W8 33009412
    578264 6xa1:LV (2.8) BS01 rna ? GO:0000122 ... P62829 33009412
    578265 6xa1:LW (2.8) BS01 rna ? GO:0003735 ... P83731 33009412
    578266 6xa1:LW (2.8) BS02 rna ? GO:0003735 ... P83731 33009412
    578267 6xa1:LX (2.8) BS01 rna ? GO:0003735 ... P62750 33009412
    578268 6xa1:LX (2.8) BS02 rna ? GO:0003735 ... P62750 33009412
    578269 6xa1:LY (2.8) BS01 rna ? GO:0002181 ... P61254 33009412
    578270 6xa1:LY (2.8) BS02 rna ? GO:0002181 ... P61254 33009412
    578271 6xa1:LZ (2.8) BS01 rna ? GO:0002181 ... P61353 33009412
    578272 6xa1:La (2.8) BS01 rna ? GO:0002181 ... P46776 33009412
    578273 6xa1:Lb (2.8) BS01 rna ? GO:0003735 ... P47914 33009412
    578274 6xa1:Lc (2.8) BS01 rna ? GO:0003723 ... P62888 33009412
    578275 6xa1:Ld (2.8) BS01 rna ? GO:0003735 ... P62899 33009412
    578276 6xa1:Le (2.8) BS01 rna ? GO:0002181 ... P62910 33009412
    578277 6xa1:Lf (2.8) BS01 rna ? GO:0000049 ... P18077 33009412
    578278 6xa1:Lg (2.8) BS01 rna ? GO:0002181 ... P49207 33009412
    578279 6xa1:Lg (2.8) BS02 ZN ? GO:0002181 ... P49207 33009412
    578280 6xa1:Lh (2.8) BS01 rna ? GO:0000463 ... P42766 33009412
    578281 6xa1:Lh (2.8) BS02 rna ? GO:0000463 ... P42766 33009412
    578282 6xa1:Li (2.8) BS01 rna ? GO:0002181 ... Q9Y3U8 33009412
    578283 6xa1:Lj (2.8) BS01 rna ? GO:0003735 ... P61927 33009412
    578284 6xa1:Lj (2.8) BS02 rna ? GO:0003735 ... P61927 33009412
    578285 6xa1:Lj (2.8) BS03 ZN ? GO:0003735 ... P61927 33009412
    578286 6xa1:Lk (2.8) BS01 rna ? GO:0001501 ... P63173 33009412
    578287 6xa1:Ll (2.8) BS01 rna ? GO:0002181 ... P62891 33009412
    578288 6xa1:Ll (2.8) BS02 rna ? GO:0002181 ... P62891 33009412
    578289 6xa1:Lm (2.8) BS01 rna ? GO:0003735 ... P62987 33009412
    578290 6xa1:Lm (2.8) BS02 ZN ? GO:0003735 ... P62987 33009412
    578291 6xa1:Lo (2.8) BS01 rna ? GO:0002181 ... P83881 33009412
    578292 6xa1:Lo (2.8) BS02 rna ? GO:0002181 ... P83881 33009412
    578293 6xa1:Lo (2.8) BS03 ZN ? GO:0002181 ... P83881 33009412
    578294 6xa1:Lp (2.8) BS01 rna ? GO:0002181 ... P61513 33009412
    578295 6xa1:Lp (2.8) BS02 ZN ? GO:0002181 ... P61513 33009412
    578296 6xa1:Lr (2.8) BS01 rna ? GO:0002181 ... P46779 33009412
    578297 6xa1:SA (2.8) BS01 rna ? GO:0003735 ... P08865 33009412
    578298 6xa1:SB (2.8) BS01 rna ? GO:0003735 ... P61247 33009412
    578299 6xa1:SC (2.8) BS01 rna ? GO:0003723 ... P15880 33009412
    578300 6xa1:SD (2.8) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33009412
    578301 6xa1:SE (2.8) BS01 rna ? GO:0002181 ... P62701 33009412
    578302 6xa1:SF (2.8) BS01 rna ? GO:0000028 ... P46782 33009412
    578303 6xa1:SG (2.8) BS01 rna ? GO:0000082 ... P62753 33009412
    578304 6xa1:SH (2.8) BS01 rna ? GO:0001843 ... P62081 33009412
    578305 6xa1:SI (2.8) BS01 rna ? GO:0000462 ... P62241 33009412
    578306 6xa1:SI (2.8) BS02 rna ? GO:0000462 ... P62241 33009412
    578307 6xa1:SJ (2.8) BS01 rna ? GO:0002181 ... P46781 33009412
    578308 6xa1:SK (2.8) BS01 rna ? N/A P46783 33009412
    578309 6xa1:SL (2.8) BS01 rna ? GO:0002181 ... P62280 33009412
    578310 6xa1:SL (2.8) BS02 rna ? GO:0002181 ... P62280 33009412
    578311 6xa1:SM (2.8) BS01 rna ? GO:0002181 ... P25398 33009412
    578312 6xa1:SN (2.8) BS01 rna ? GO:0002181 ... P62277 33009412
    578313 6xa1:SO (2.8) BS01 rna ? GO:0003735 ... P62263 33009412
    578314 6xa1:SP (2.8) BS01 rna ? GO:0000028 ... P62841 33009412
    578315 6xa1:SQ (2.8) BS01 rna ? GO:0000462 ... P62249 33009412
    578316 6xa1:SR (2.8) BS01 rna ? GO:0002181 ... P08708 33009412
    578317 6xa1:SS (2.8) BS01 rna ? GO:0002181 ... P62269 33009412
    578318 6xa1:ST (2.8) BS01 rna ? GO:0000028 ... P39019 33009412
    578319 6xa1:SU (2.8) BS01 rna ? GO:0003723 ... P60866 33009412
    578320 6xa1:SW (2.8) BS01 rna ? GO:0002181 ... P62244 33009412
    578321 6xa1:SX (2.8) BS01 rna ? GO:0002181 ... P62266 33009412
    578322 6xa1:SY (2.8) BS01 rna ? GO:0002181 ... P62847 33009412
    578323 6xa1:SZ (2.8) BS01 rna ? N/A P62851 33009412
    578324 6xa1:Sa (2.8) BS01 rna ? GO:0003735 ... P62854 33009412
    578325 6xa1:Sa (2.8) BS02 ZN ? GO:0003735 ... P62854 33009412
    578326 6xa1:Sb (2.8) BS01 rna ? GO:0000028 ... P42677 33009412
    578327 6xa1:Sc (2.8) BS01 rna ? GO:0003735 ... P62857 33009412
    578328 6xa1:Sd (2.8) BS01 rna ? GO:0002181 ... P62273 33009412
    578329 6xa1:Sd (2.8) BS02 ZN ? GO:0002181 ... P62273 33009412
    578330 6xa1:Se (2.8) BS01 rna ? GO:0003735 ... E9PR30 33009412
    578331 6xa1:Sf (2.8) BS01 rna ? GO:0003735 ... P62979 33009412
    578332 6xa1:Sf (2.8) BS02 ZN ? GO:0003735 ... P62979 33009412
    578333 6xa1:Sg (2.8) BS01 rna ? GO:0001891 ... P63244 33009412
    578334 6xa1:j (2.8) BS01 rna ? GO:0000184 ... P62495 33009412
    578335 6xa1:j (2.8) BS02 rna ? GO:0000184 ... P62495 33009412
    578336 6xa1:j (2.8) BS03 rna ? GO:0000184 ... P62495 33009412
    578337 6xa1:j (2.8) BS04 rna ? GO:0000184 ... P62495 33009412
    578338 6xa2:A (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578339 6xa2:A (2.64) BS02 V0A ? GO:0004497 ... D3Y1J3 33569241
    578340 6xa2:B (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578341 6xa2:B (2.64) BS02 V0A ? GO:0004497 ... D3Y1J3 33569241
    578342 6xa2:C (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578343 6xa2:C (2.64) BS02 V0A ? GO:0004497 ... D3Y1J3 33569241
    578344 6xa2:D (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578345 6xa2:D (2.64) BS02 V0A ? GO:0004497 ... D3Y1J3 33569241
    578346 6xa2:E (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578347 6xa2:E (2.64) BS02 V0A ? GO:0004497 ... D3Y1J3 33569241
    578348 6xa2:F (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578349 6xa2:F (2.64) BS02 V0A ? GO:0004497 ... D3Y1J3 33569241
    578350 6xa2:G (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578351 6xa2:G (2.64) BS02 V0A ? GO:0004497 ... D3Y1J3 33569241
    578352 6xa2:H (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578353 6xa2:H (2.64) BS02 V0A ? GO:0004497 ... D3Y1J3 33569241
    578354 6xa3:A (2.96) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    578355 6xa4:A (1.65) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 33158912
    578356 6xa5:A (1.03) BS01 GLC ? N/A A1YIY3 33824212
    578357 6xa5:A (1.03) BS02 CA ? N/A A1YIY3 33824212
    578358 6xa5:A (1.03) BS03 CA ? N/A A1YIY3 33824212
    578359 6xa5:A (1.03) BS04 CA ? N/A A1YIY3 33824212
    578360 6xa5:A (1.03) BS05 CA ? N/A A1YIY3 33824212
    578361 6xa5:A (1.03) BS06 CA ? N/A A1YIY3 33824212
    578362 6xa5:A (1.03) BS07 CA ? N/A A1YIY3 33824212
    578363 6xa6:A (1.95) BS01 peptide ? N/A Q14160 33684218
    578364 6xa6:B (1.95) BS01 peptide ? N/A Q14160 33684218
    578365 6xa7:A (2.5) BS01 peptide ? N/A Q14160 33684218
    578366 6xa7:B (2.5) BS01 peptide ? N/A Q14160 33684218
    578367 6xa7:C (2.5) BS01 peptide ? N/A Q14160 33684218
    578368 6xa7:D (2.5) BS01 peptide ? N/A Q14160 33684218
    578369 6xa8:A (2.2) BS01 peptide ? N/A Q14160 33684218
    578370 6xa8:B (2.2) BS01 peptide ? N/A Q14160 33684218
    578371 6xa9:A (2.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 32845033
    578372 6xa9:C (2.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 32845033
    578373 6xa9:E (2.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 32845033
    578374 6xaa:A (2.7) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 32845033
    578375 6xab:A (1.781) BS01 ACT N/A GO:0043190 ... N/A 33538578
    578376 6xac:A (1.22) BS01 GAL ? N/A A1YIY3 33824212
    578377 6xac:A (1.22) BS02 CA ? N/A A1YIY3 33824212
    578378 6xac:A (1.22) BS03 CA ? N/A A1YIY3 33824212
    578379 6xac:A (1.22) BS04 CA ? N/A A1YIY3 33824212
    578380 6xac:A (1.22) BS05 CA ? N/A A1YIY3 33824212
    578381 6xac:A (1.22) BS06 CA ? N/A A1YIY3 33824212
    578382 6xac:A (1.22) BS07 CA ? N/A A1YIY3 33824212
    578383 6xae:A (2.257) BS01 Z7F ? GO:0003677 ... P51449 32334911
    578384 6xaf:A (1.968) BS01 GDP 2.7.11.1
    3.6.5.-
    GO:0005525 ... Q5S007 N/A
    578385 6xaf:B (1.968) BS01 GDP 2.7.11.1
    3.6.5.-
    GO:0005525 ... Q5S007 N/A
    578386 6xai:A (1.489) BS01 HEM N/A GO:0004497 ... N/A 32786740
    578387 6xai:A (1.489) BS02 QRP N/A GO:0004497 ... N/A 32786740
    578388 6xai:A (1.489) BS03 QRP N/A GO:0004497 ... N/A 32786740
    578389 6xai:B (1.489) BS01 HEM N/A GO:0004497 ... N/A 32786740
    578390 6xai:B (1.489) BS02 QRP N/A GO:0004497 ... N/A 32786740
    578391 6xai:B (1.489) BS03 QRP N/A GO:0004497 ... N/A 32786740
    578392 6xaj:A (1.498) BS01 HEM N/A GO:0004497 ... N/A 32786740
    578393 6xak:A (1.479) BS01 HEM N/A GO:0004497 ... N/A 32786740
    578394 6xak:A (1.479) BS02 QRP N/A GO:0004497 ... N/A 32786740
    578395 6xak:A (1.479) BS03 UYM N/A GO:0004497 ... N/A 32786740
    578396 6xak:B (1.479) BS01 HEM N/A GO:0004497 ... N/A 32786740
    578397 6xak:B (1.479) BS02 QRP N/A GO:0004497 ... N/A 32786740
    578398 6xak:B (1.479) BS03 UYM N/A GO:0004497 ... N/A 32786740
    578399 6xal:A (1.349) BS01 HEM N/A GO:0004497 ... N/A 32786740
    578400 6xal:A (1.349) BS02 UYG N/A GO:0004497 ... N/A 32786740

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).