SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    580201 6xhy:2N (2.6) BS01 rna ? GO:0003729 ... P60488 33462493
    580202 6xhy:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 33462493
    580203 6xhy:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 33462493
    580204 6xhy:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 33462493
    580205 6xhy:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 33462493
    580206 6xhy:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 33462493
    580207 6xhy:2Q (2.6) BS03 rna ? GO:0000049 ... P60489 33462493
    580208 6xhy:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 33462493
    580209 6xhy:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 33462493
    580210 6xhy:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 33462493
    580211 6xhy:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 33462493
    580212 6xhy:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 33462493
    580213 6xhy:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 33462493
    580214 6xhy:2T (2.6) BS01 rna ? GO:0003735 ... P60490 33462493
    580215 6xhy:2T (2.6) BS02 rna ? GO:0003735 ... P60490 33462493
    580216 6xhy:2T (2.6) BS03 MG ? GO:0003735 ... P60490 33462493
    580217 6xhy:2U (2.6) BS01 rna ? GO:0000027 ... P60491 33462493
    580218 6xhy:2V (2.6) BS01 rna ? GO:0003723 ... P60492 33462493
    580219 6xhy:2V (2.6) BS02 MG ? GO:0003723 ... P60492 33462493
    580220 6xhy:2V (2.6) BS03 MG ? GO:0003723 ... P60492 33462493
    580221 6xhy:2V (2.6) BS04 MG ? GO:0003723 ... P60492 33462493
    580222 6xhy:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 33462493
    580223 6xhy:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    580224 6xhy:2X (2.6) BS01 rna ? GO:0003735 ... Q5SHP0 33462493
    580225 6xhy:2X (2.6) BS02 MG ? GO:0003735 ... Q5SHP0 33462493
    580226 6xhy:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 33462493
    580227 6xhy:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 33462493
    580228 6xhy:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 33462493
    580229 6xhy:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 33462493
    580230 6xhy:2b (2.6) BS01 rna ? GO:0003735 ... P80371 33462493
    580231 6xhy:2c (2.6) BS01 rna ? GO:0003676 ... P80372 33462493
    580232 6xhy:2d (2.6) BS01 rna ? GO:0003723 ... P80373 33462493
    580233 6xhy:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 33462493
    580234 6xhy:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 33462493
    580235 6xhy:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    580236 6xhy:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 33462493
    580237 6xhy:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    580238 6xhy:2g (2.6) BS01 rna ? GO:0000049 ... P17291 33462493
    580239 6xhy:2g (2.6) BS02 rna ? GO:0000049 ... P17291 33462493
    580240 6xhy:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 33462493
    580241 6xhy:2i (2.6) BS01 rna ? GO:0000049 ... P80374 33462493
    580242 6xhy:2i (2.6) BS02 rna ? GO:0000049 ... P80374 33462493
    580243 6xhy:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 33462493
    580244 6xhy:2k (2.6) BS01 rna ? GO:0003735 ... P80376 33462493
    580245 6xhy:2k (2.6) BS02 rna ? GO:0003735 ... P80376 33462493
    580246 6xhy:2k (2.6) BS03 MG ? GO:0003735 ... P80376 33462493
    580247 6xhy:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 33462493
    580248 6xhy:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 33462493
    580249 6xhy:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 33462493
    580250 6xhy:2l (2.6) BS04 MG ? GO:0000049 ... Q5SHN3 33462493
    580251 6xhy:2m (2.6) BS01 rna ? GO:0000049 ... P80377 33462493
    580252 6xhy:2m (2.6) BS02 rna ? GO:0000049 ... P80377 33462493
    580253 6xhy:2m (2.6) BS03 rna ? GO:0000049 ... P80377 33462493
    580254 6xhy:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 33462493
    580255 6xhy:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    580256 6xhy:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 33462493
    580257 6xhy:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 33462493
    580258 6xhy:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 33462493
    580259 6xhy:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 33462493
    580260 6xhy:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 33462493
    580261 6xhy:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 33462493
    580262 6xhy:2r (2.6) BS02 MG ? GO:0003735 ... Q5SLQ0 33462493
    580263 6xhy:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 33462493
    580264 6xhy:2t (2.6) BS01 rna ? GO:0003723 ... P80380 33462493
    580265 6xhy:2t (2.6) BS02 MG ? GO:0003723 ... P80380 33462493
    580266 6xi0:C (3.3) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    580267 6xi0:C (3.3) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    580268 6xi0:D (3.3) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    580269 6xi0:E (3.3) BS01 FES 7.1.1.8 GO:0005886 ... D5ANZ2 33568648
    580270 6xi0:P (3.3) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    580271 6xi0:P (3.3) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    580272 6xi0:Q (3.3) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    580273 6xi0:R (3.3) BS01 FES 7.1.1.8 GO:0005886 ... D5ANZ2 33568648
    580274 6xi1:AAA (1.75) BS01 CA ? N/A A0KNW4 32984811
    580275 6xi1:AAA (1.75) BS02 CA ? N/A A0KNW4 32984811
    580276 6xi1:AAA (1.75) BS03 CA ? N/A A0KNW4 32984811
    580277 6xi1:AAA (1.75) BS04 CA ? N/A A0KNW4 32984811
    580278 6xi1:AAA (1.75) BS05 CA ? N/A A0KNW4 32984811
    580279 6xi1:AAA (1.75) BS06 CA ? N/A A0KNW4 32984811
    580280 6xi1:AAA (1.75) BS07 CA ? N/A A0KNW4 32984811
    580281 6xi1:AAA (1.75) BS08 CA ? N/A A0KNW4 32984811
    580282 6xi1:AAA (1.75) BS09 CA ? N/A A0KNW4 32984811
    580283 6xi1:AAA (1.75) BS10 CA ? N/A A0KNW4 32984811
    580284 6xi1:AAA (1.75) BS11 CA ? N/A A0KNW4 32984811
    580285 6xi1:AAA (1.75) BS12 CA ? N/A A0KNW4 32984811
    580286 6xi1:AAA (1.75) BS13 CA ? N/A A0KNW4 32984811
    580287 6xi1:BBB (1.75) BS01 CA ? N/A A0KNW4 32984811
    580288 6xi1:BBB (1.75) BS02 CA ? N/A A0KNW4 32984811
    580289 6xi1:BBB (1.75) BS03 CA ? N/A A0KNW4 32984811
    580290 6xi1:BBB (1.75) BS04 CA ? N/A A0KNW4 32984811
    580291 6xi1:BBB (1.75) BS05 CA ? N/A A0KNW4 32984811
    580292 6xi1:BBB (1.75) BS06 CA ? N/A A0KNW4 32984811
    580293 6xi1:BBB (1.75) BS07 CA ? N/A A0KNW4 32984811
    580294 6xi1:BBB (1.75) BS08 CA ? N/A A0KNW4 32984811
    580295 6xi1:BBB (1.75) BS09 CA ? N/A A0KNW4 32984811
    580296 6xi1:BBB (1.75) BS10 CA ? N/A A0KNW4 32984811
    580297 6xi1:BBB (1.75) BS11 CA ? N/A A0KNW4 32984811
    580298 6xi1:BBB (1.75) BS12 CA ? N/A A0KNW4 32984811
    580299 6xi1:BBB (1.75) BS13 CA ? N/A A0KNW4 32984811
    580300 6xi2:A (2.57) BS01 peptide 2.4.1.312 GO:0001764 ... Q8NAT1 33825709
    580301 6xi2:D (2.57) BS01 peptide 2.4.1.312 GO:0001764 ... Q8NAT1 33825709
    580302 6xi3:AAA (2.0) BS01 CA N/A N/A N/A 32984811
    580303 6xi3:AAA (2.0) BS02 CA N/A N/A N/A 32984811
    580304 6xi3:AAA (2.0) BS03 CA N/A N/A N/A 32984811
    580305 6xi3:AAA (2.0) BS04 CA N/A N/A N/A 32984811
    580306 6xi3:AAA (2.0) BS05 EDT N/A N/A N/A 32984811
    580307 6xi7:A (1.95) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 33608534
    580308 6xi7:A (1.95) BS02 MG 3.6.5.2 GO:0003924 ... P01116 33608534
    580309 6xi7:B (1.95) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 33608534
    580310 6xi7:B (1.95) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 33608534
    580311 6xi7:B (1.95) BS03 ZN 2.7.11.1 GO:0007165 ... P04049 33608534
    580312 6xi8:A (3.64) BS01 ADP 2.7.11.23 GO:0004672 ... P06242 33827808
    580313 6xi9:A (2.14) BS01 SF4 2.5.1.120 GO:0003824 ... C6XW09 32627538
    580314 6xi9:A (2.14) BS02 MET 2.5.1.120 GO:0003824 ... C6XW09 32627538
    580315 6xi9:A (2.14) BS03 V47 2.5.1.120 GO:0003824 ... C6XW09 32627538
    580316 6xi9:B (2.14) BS01 SF4 2.5.1.120 GO:0003824 ... C6XW09 32627538
    580317 6xi9:B (2.14) BS02 MET 2.5.1.120 GO:0003824 ... C6XW09 32627538
    580318 6xi9:B (2.14) BS03 V47 2.5.1.120 GO:0003824 ... C6XW09 32627538
    580319 6xib:B (1.546) BS01 peptide 3.4.21.- GO:0004252 ... Q8NBP7 33170686
    580320 6xic:B (1.377) BS01 peptide 3.4.21.- GO:0004252 ... Q8NBP7 33170686
    580321 6xid:B (1.482) BS01 peptide 3.4.21.- GO:0004252 ... Q8NBP7 33170686
    580322 6xie:B (1.43) BS01 peptide 3.4.21.- GO:0004252 ... Q8NBP7 33170686
    580323 6xif:B (1.774) BS01 peptide 3.4.21.- GO:0004252 ... Q8NBP7 33170686
    580324 6xig:A (1.59) BS01 SF4 2.5.1.120 GO:0003824 ... C6XW09 32627538
    580325 6xig:B (1.59) BS01 SF4 2.5.1.120 GO:0003824 ... C6XW09 32627538
    580326 6xih:A (2.65) BS01 V3S 2.7.11.25 GO:0004672 ... Q99683 32738982
    580327 6xih:B (2.65) BS01 V3S 2.7.11.25 GO:0004672 ... Q99683 32738982
    580328 6xii:0 (7.0) BS01 rna ? GO:0002181 ... P0AG48 32820061
    580329 6xii:1 (7.0) BS01 rna ? GO:0002181 ... P61175 32820061
    580330 6xii:2 (7.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    580331 6xii:3 (7.0) BS01 rna ? GO:0000027 ... P60624 32820061
    580332 6xii:4 (7.0) BS01 rna ? GO:0000027 ... P68919 32820061
    580333 6xii:9 (7.0) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    580334 6xii:AA (7.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    580335 6xii:AA (7.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    580336 6xii:AA (7.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    580337 6xii:AB (7.0) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    580338 6xii:AE (7.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580339 6xii:AE (7.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580340 6xii:AE (7.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580341 6xii:AE (7.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580342 6xii:AE (7.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580343 6xii:AE (7.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580344 6xii:C (7.0) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    580345 6xii:E (7.0) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    580346 6xii:F (7.0) BS01 rna ? GO:0000028 ... P68679 32820061
    580347 6xii:G (7.0) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    580348 6xii:I (7.0) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    580349 6xii:J (7.0) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    580350 6xii:K (7.0) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    580351 6xii:K (7.0) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    580352 6xii:L (7.0) BS01 rna ? GO:0002181 ... P02358 32820061
    580353 6xii:M (7.0) BS01 rna ? GO:0000028 ... P02359 32820061
    580354 6xii:M (7.0) BS02 rna ? GO:0000028 ... P02359 32820061
    580355 6xii:N (7.0) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    580356 6xii:O (7.0) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    580357 6xii:P (7.0) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    580358 6xii:Q (7.0) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    580359 6xii:R (7.0) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    580360 6xii:S (7.0) BS01 rna ? GO:0000028 ... P0AG59 32820061
    580361 6xii:T (7.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    580362 6xii:T (7.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    580363 6xii:U (7.0) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    580364 6xii:V (7.0) BS01 rna ? GO:0000028 ... P0AG63 32820061
    580365 6xii:W (7.0) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    580366 6xii:X (7.0) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    580367 6xii:X (7.0) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    580368 6xii:b (7.0) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    580369 6xii:b (7.0) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    580370 6xii:c (7.0) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    580371 6xii:e (7.0) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    580372 6xii:f (7.0) BS01 rna ? GO:0000027 ... P0AG51 32820061
    580373 6xii:f (7.0) BS02 rna ? GO:0000027 ... P0AG51 32820061
    580374 6xii:g (7.0) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    580375 6xii:h (7.0) BS01 rna ? GO:0000027 ... P60422 32820061
    580376 6xii:i (7.0) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    580377 6xii:j (7.0) BS01 rna ? GO:0000027 ... P60438 32820061
    580378 6xii:k (7.0) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    580379 6xii:l (7.0) BS01 rna ? GO:0001070 ... P60723 32820061
    580380 6xii:m (7.0) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    580381 6xii:n (7.0) BS01 rna ? GO:0000027 ... P62399 32820061
    580382 6xii:n (7.0) BS02 rna ? GO:0000027 ... P62399 32820061
    580383 6xii:o (7.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    580384 6xii:p (7.0) BS01 rna ? GO:0000027 ... P0AG55 32820061
    580385 6xii:q (7.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    580386 6xii:r (7.0) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    580387 6xii:s (7.0) BS01 rna ? GO:0002181 ... P0AA10 32820061
    580388 6xii:t (7.0) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    580389 6xii:t (7.0) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    580390 6xii:u (7.0) BS01 rna ? GO:0002181 ... P02413 32820061
    580391 6xii:v (7.0) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    580392 6xii:v (7.0) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    580393 6xii:w (7.0) BS01 rna ? GO:0000027 ... P0AG44 32820061
    580394 6xii:x (7.0) BS01 rna ? GO:0002181 ... P0C018 32820061
    580395 6xii:x (7.0) BS02 rna ? GO:0002181 ... P0C018 32820061
    580396 6xii:y (7.0) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    580397 6xii:z (7.0) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    580398 6xij:0 (8.0) BS01 rna ? GO:0002181 ... P0AG48 32820061
    580399 6xij:1 (8.0) BS01 rna ? GO:0002181 ... P61175 32820061
    580400 6xij:2 (8.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820061

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).