SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    580401 6xij:3 (8.0) BS01 rna ? GO:0000027 ... P60624 32820061
    580402 6xij:4 (8.0) BS01 rna ? GO:0000027 ... P68919 32820061
    580403 6xij:9 (8.0) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    580404 6xij:AA (8.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    580405 6xij:AA (8.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    580406 6xij:AA (8.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    580407 6xij:AA (8.0) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    580408 6xij:AB (8.0) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    580409 6xij:AE (8.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580410 6xij:AE (8.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580411 6xij:AE (8.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580412 6xij:AE (8.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580413 6xij:AE (8.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580414 6xij:AE (8.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    580415 6xij:C (8.0) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    580416 6xij:E (8.0) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    580417 6xij:F (8.0) BS01 rna ? GO:0000028 ... P68679 32820061
    580418 6xij:G (8.0) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    580419 6xij:I (8.0) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    580420 6xij:J (8.0) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    580421 6xij:K (8.0) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    580422 6xij:K (8.0) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    580423 6xij:L (8.0) BS01 rna ? GO:0002181 ... P02358 32820061
    580424 6xij:M (8.0) BS01 rna ? GO:0000028 ... P02359 32820061
    580425 6xij:M (8.0) BS02 rna ? GO:0000028 ... P02359 32820061
    580426 6xij:N (8.0) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    580427 6xij:O (8.0) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    580428 6xij:P (8.0) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    580429 6xij:Q (8.0) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    580430 6xij:R (8.0) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    580431 6xij:S (8.0) BS01 rna ? GO:0000028 ... P0AG59 32820061
    580432 6xij:T (8.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    580433 6xij:T (8.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    580434 6xij:U (8.0) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    580435 6xij:V (8.0) BS01 rna ? GO:0000028 ... P0AG63 32820061
    580436 6xij:W (8.0) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    580437 6xij:X (8.0) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    580438 6xij:X (8.0) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    580439 6xij:b (8.0) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    580440 6xij:b (8.0) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    580441 6xij:c (8.0) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    580442 6xij:e (8.0) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    580443 6xij:f (8.0) BS01 rna ? GO:0000027 ... P0AG51 32820061
    580444 6xij:f (8.0) BS02 rna ? GO:0000027 ... P0AG51 32820061
    580445 6xij:g (8.0) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    580446 6xij:h (8.0) BS01 rna ? GO:0000027 ... P60422 32820061
    580447 6xij:i (8.0) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    580448 6xij:j (8.0) BS01 rna ? GO:0000027 ... P60438 32820061
    580449 6xij:k (8.0) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    580450 6xij:l (8.0) BS01 rna ? GO:0001070 ... P60723 32820061
    580451 6xij:m (8.0) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    580452 6xij:n (8.0) BS01 rna ? GO:0000027 ... P62399 32820061
    580453 6xij:n (8.0) BS02 rna ? GO:0000027 ... P62399 32820061
    580454 6xij:o (8.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    580455 6xij:p (8.0) BS01 rna ? GO:0000027 ... P0AG55 32820061
    580456 6xij:q (8.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    580457 6xij:r (8.0) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    580458 6xij:s (8.0) BS01 rna ? GO:0002181 ... P0AA10 32820061
    580459 6xij:t (8.0) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    580460 6xij:t (8.0) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    580461 6xij:u (8.0) BS01 rna ? GO:0002181 ... P02413 32820061
    580462 6xij:v (8.0) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    580463 6xij:v (8.0) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    580464 6xij:w (8.0) BS01 rna ? GO:0000027 ... P0AG44 32820061
    580465 6xij:x (8.0) BS01 rna ? GO:0002181 ... P0C018 32820061
    580466 6xij:x (8.0) BS02 rna ? GO:0002181 ... P0C018 32820061
    580467 6xij:y (8.0) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    580468 6xij:z (8.0) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    580469 6xim:A (2.5) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    580470 6xim:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    580471 6xim:A (2.5) BS03 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    580472 6xim:B (2.5) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    580473 6xim:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    580474 6xim:B (2.5) BS03 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    580475 6xim:C (2.5) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    580476 6xim:C (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    580477 6xim:C (2.5) BS03 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    580478 6xim:D (2.5) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    580479 6xim:D (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    580480 6xim:D (2.5) BS03 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    580481 6xin:A (1.75) BS01 V41 4.2.1.20 GO:0000162 ... P00929 N/A
    580482 6xin:B (1.75) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    580483 6xin:B (1.75) BS02 V41 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    580484 6xio:A (3.12) BS01 AT4 N/A GO:0000287 ... N/A 33839685
    580485 6xio:A (3.12) BS02 F6P N/A GO:0000287 ... N/A 33839685
    580486 6xiq:A (4.2) BS01 rna ? GO:0002181 ... P0CX45 32855298
    580487 6xiq:A (4.2) BS02 rna ? GO:0002181 ... P0CX45 32855298
    580488 6xiq:AA (4.2) BS01 rna ? GO:0000054 ... Q08745 32855298
    580489 6xiq:AB (4.2) BS01 rna ? GO:0000028 ... P0CX47 32855298
    580490 6xiq:AD (4.2) BS01 rna ? GO:0000462 ... P05756 32855298
    580491 6xiq:AE (4.2) BS01 rna ? GO:0000028 ... P39516 32855298
    580492 6xiq:AF (4.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580493 6xiq:AG (4.2) BS01 rna ? GO:0000462 ... P0CX51 32855298
    580494 6xiq:AH (4.2) BS01 rna ? GO:0000028 ... P14127 32855298
    580495 6xiq:AI (4.2) BS01 rna ? GO:0000054 ... P0CX55 32855298
    580496 6xiq:AJ (4.2) BS01 rna ? GO:0000028 ... P07280 32855298
    580497 6xiq:AK (4.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580498 6xiq:AL (4.2) BS01 rna ? GO:0000447 ... P0C0V8 32855298
    580499 6xiq:AM (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580500 6xiq:AN (4.2) BS01 rna ? GO:0000462 ... P0CX29 32855298
    580501 6xiq:AO (4.2) BS01 rna ? GO:0000462 ... P0CX31 32855298
    580502 6xiq:AP (4.2) BS01 rna ? N/A N/A 32855298
    580503 6xiq:AP (4.2) BS02 rna ? N/A N/A 32855298
    580504 6xiq:AQ (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580505 6xiq:AQ (4.2) BS02 ZN ? GO:0003735 ... N/A 32855298
    580506 6xiq:AR (4.2) BS01 rna ? GO:0000028 ... P35997 32855298
    580507 6xiq:AR (4.2) BS02 ZN ? GO:0000028 ... P35997 32855298
    580508 6xiq:AS (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580509 6xiq:AT (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580510 6xiq:AT (4.2) BS02 ZN ? GO:0003735 ... N/A 32855298
    580511 6xiq:AU (4.2) BS01 rna ? GO:0002181 ... P0CX33 32855298
    580512 6xiq:AV (4.2) BS01 rna ? GO:0001965 ... P38011 32855298
    580513 6xiq:B (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580514 6xiq:C (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580515 6xiq:C (4.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580516 6xiq:D (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580517 6xiq:D (4.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580518 6xiq:E (4.2) BS01 rna ? GO:0000027 ... Q02326 32855298
    580519 6xiq:F (4.2) BS01 rna ? GO:0000463 ... P05737 32855298
    580520 6xiq:F (4.2) BS02 rna ? GO:0000463 ... P05737 32855298
    580521 6xiq:G (4.2) BS01 rna N/A GO:0003723 ... N/A 32855298
    580522 6xiq:G (4.2) BS02 rna N/A GO:0003723 ... N/A 32855298
    580523 6xiq:H (4.2) BS01 rna N/A GO:0003735 ... N/A 32855298
    580524 6xiq:I (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580525 6xiq:I (4.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580526 6xiq:J (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580527 6xiq:J (4.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580528 6xiq:L (4.2) BS01 rna ? GO:0002181 ... Q12690 32855298
    580529 6xiq:L (4.2) BS02 rna ? GO:0002181 ... Q12690 32855298
    580530 6xiq:L1 (4.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580531 6xiq:L1 (4.2) BS02 rna ? GO:0003723 ... N/A 32855298
    580532 6xiq:M (4.2) BS01 rna ? GO:0000027 ... P36105 32855298
    580533 6xiq:N (4.2) BS01 rna ? GO:0002181 ... P05748 32855298
    580534 6xiq:N (4.2) BS02 rna ? GO:0002181 ... P05748 32855298
    580535 6xiq:O (4.2) BS01 rna ? GO:0000470 ... P26784 32855298
    580536 6xiq:P (4.2) BS01 rna ? GO:0000448 ... P05740 32855298
    580537 6xiq:P (4.2) BS02 rna ? GO:0000448 ... P05740 32855298
    580538 6xiq:P0 (4.2) BS01 rna N/A GO:0042254 ... N/A 32855298
    580539 6xiq:P2 (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580540 6xiq:Q (4.2) BS01 rna ? GO:0002181 ... P0CX49 32855298
    580541 6xiq:R (4.2) BS01 rna ? GO:0002181 ... P0CX82 32855298
    580542 6xiq:R (4.2) BS02 rna ? GO:0002181 ... P0CX82 32855298
    580543 6xiq:S (4.2) BS01 rna ? GO:0002181 ... P0CX23 32855298
    580544 6xiq:S (4.2) BS02 rna ? GO:0002181 ... P0CX23 32855298
    580545 6xiq:T (4.2) BS01 rna ? GO:0002181 ... Q02753 32855298
    580546 6xiq:T (4.2) BS02 rna ? GO:0002181 ... Q02753 32855298
    580547 6xiq:U (4.2) BS01 rna ? GO:0002181 ... P05749 32855298
    580548 6xiq:V (4.2) BS01 rna ? GO:0002181 ... P0CX41 32855298
    580549 6xiq:V (4.2) BS02 rna ? GO:0002181 ... P0CX41 32855298
    580550 6xiq:W (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580551 6xiq:X (4.2) BS01 rna ? GO:0000027 ... P04456 32855298
    580552 6xiq:X (4.2) BS02 rna ? GO:0000027 ... P04456 32855298
    580553 6xiq:Y (4.2) BS01 rna ? GO:0002181 ... P05743 32855298
    580554 6xiq:Y (4.2) BS02 rna ? GO:0002181 ... P05743 32855298
    580555 6xiq:Z (4.2) BS01 rna ? GO:0002181 ... P0C2H6 32855298
    580556 6xiq:a (4.2) BS01 rna ? GO:0002181 ... P02406 32855298
    580557 6xiq:b (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580558 6xiq:c (4.2) BS01 rna ? GO:0002181 ... P14120 32855298
    580559 6xiq:d (4.2) BS01 rna ? GO:0002181 ... P0C2H8 32855298
    580560 6xiq:e (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580561 6xiq:f (4.2) BS01 rna ? GO:0000027 ... P05744 32855298
    580562 6xiq:g (4.2) BS01 rna ? GO:0002181 ... P87262 32855298
    580563 6xiq:h (4.2) BS01 rna ? GO:0000463 ... P0CX84 32855298
    580564 6xiq:h (4.2) BS02 rna ? GO:0000463 ... P0CX84 32855298
    580565 6xiq:i (4.2) BS01 rna ? GO:0002181 ... P05745 32855298
    580566 6xiq:j (4.2) BS01 rna ? GO:0000448 ... P49166 32855298
    580567 6xiq:j (4.2) BS02 rna ? GO:0000448 ... P49166 32855298
    580568 6xiq:j (4.2) BS03 ZN ? GO:0000448 ... P49166 32855298
    580569 6xiq:k (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580570 6xiq:l (4.2) BS01 rna ? GO:0002181 ... P04650 32855298
    580571 6xiq:l (4.2) BS02 rna ? GO:0002181 ... P04650 32855298
    580572 6xiq:m (4.2) BS01 rna ? GO:0000027 ... P0CH08 32855298
    580573 6xiq:m (4.2) BS02 ZN ? GO:0000027 ... P0CH08 32855298
    580574 6xiq:o (4.2) BS01 rna ? GO:0002181 ... P0CX27 32855298
    580575 6xiq:o (4.2) BS02 ZN ? GO:0002181 ... P0CX27 32855298
    580576 6xiq:p (4.2) BS01 rna ? GO:0002181 ... P0CX25 32855298
    580577 6xiq:p (4.2) BS02 rna ? GO:0002181 ... P0CX25 32855298
    580578 6xiq:p (4.2) BS03 ZN ? GO:0002181 ... P0CX25 32855298
    580579 6xiq:q (4.2) BS01 rna ? GO:0000028 ... P32905 32855298
    580580 6xiq:r (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580581 6xiq:s (4.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580582 6xiq:t (4.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580583 6xiq:u (4.2) BS01 rna ? GO:0002181 ... P0CX35 32855298
    580584 6xiq:v (4.2) BS01 rna ? GO:0003723 ... A0A1L4AA68 32855298
    580585 6xiq:w (4.2) BS01 rna ? GO:0000462 ... P0CX37 32855298
    580586 6xiq:x (4.2) BS01 rna ? GO:0002181 ... P26786 32855298
    580587 6xiq:y (4.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580588 6xiq:z (4.2) BS01 rna ? GO:0000462 ... O13516 32855298
    580589 6xir:A (3.2) BS01 rna ? GO:0002181 ... P0CX45 32855298
    580590 6xir:A (3.2) BS02 rna ? GO:0002181 ... P0CX45 32855298
    580591 6xir:AA (3.2) BS01 rna ? GO:0000054 ... Q08745 32855298
    580592 6xir:AB (3.2) BS01 rna ? GO:0000028 ... P0CX47 32855298
    580593 6xir:AD (3.2) BS01 rna ? GO:0000462 ... P05756 32855298
    580594 6xir:AD (3.2) BS02 rna ? GO:0000462 ... P05756 32855298
    580595 6xir:AE (3.2) BS01 rna ? GO:0000028 ... P39516 32855298
    580596 6xir:AF (3.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580597 6xir:AG (3.2) BS01 rna ? GO:0000462 ... P0CX51 32855298
    580598 6xir:AH (3.2) BS01 rna ? GO:0000028 ... P14127 32855298
    580599 6xir:AI (3.2) BS01 rna ? GO:0000054 ... P0CX55 32855298
    580600 6xir:AJ (3.2) BS01 rna ? GO:0000028 ... P07280 32855298

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).