SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    580601 6xir:AK (3.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580602 6xir:AL (3.2) BS01 rna ? GO:0000447 ... P0C0V8 32855298
    580603 6xir:AM (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580604 6xir:AN (3.2) BS01 rna ? GO:0000462 ... P0CX29 32855298
    580605 6xir:AO (3.2) BS01 rna ? GO:0000462 ... P0CX31 32855298
    580606 6xir:AP (3.2) BS01 rna ? N/A N/A 32855298
    580607 6xir:AQ (3.2) BS01 peptide ? GO:0003735 ... N/A 32855298
    580608 6xir:AQ (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580609 6xir:AQ (3.2) BS03 ZN ? GO:0003735 ... N/A 32855298
    580610 6xir:AR (3.2) BS01 rna ? GO:0000028 ... P35997 32855298
    580611 6xir:AR (3.2) BS02 ZN ? GO:0000028 ... P35997 32855298
    580612 6xir:AS (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580613 6xir:AT (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580614 6xir:AT (3.2) BS02 ZN ? GO:0003735 ... N/A 32855298
    580615 6xir:B (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580616 6xir:C (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580617 6xir:C (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580618 6xir:D (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580619 6xir:D (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580620 6xir:E (3.2) BS01 rna ? GO:0000027 ... Q02326 32855298
    580621 6xir:F (3.2) BS01 rna ? GO:0000463 ... P05737 32855298
    580622 6xir:F (3.2) BS02 rna ? GO:0000463 ... P05737 32855298
    580623 6xir:G (3.2) BS01 rna N/A GO:0003723 ... N/A 32855298
    580624 6xir:G (3.2) BS02 rna N/A GO:0003723 ... N/A 32855298
    580625 6xir:H (3.2) BS01 rna N/A GO:0003735 ... N/A 32855298
    580626 6xir:I (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580627 6xir:I (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580628 6xir:I (3.2) BS03 rna ? GO:0003735 ... N/A 32855298
    580629 6xir:J (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580630 6xir:J (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580631 6xir:L (3.2) BS01 rna ? GO:0002181 ... Q12690 32855298
    580632 6xir:L (3.2) BS02 rna ? GO:0002181 ... Q12690 32855298
    580633 6xir:M (3.2) BS01 rna ? GO:0000027 ... P36105 32855298
    580634 6xir:N (3.2) BS01 rna ? GO:0002181 ... P05748 32855298
    580635 6xir:N (3.2) BS02 rna ? GO:0002181 ... P05748 32855298
    580636 6xir:O (3.2) BS01 rna ? GO:0000470 ... P26784 32855298
    580637 6xir:P (3.2) BS01 rna ? GO:0000448 ... P05740 32855298
    580638 6xir:P (3.2) BS02 rna ? GO:0000448 ... P05740 32855298
    580639 6xir:Q (3.2) BS01 rna ? GO:0002181 ... P0CX49 32855298
    580640 6xir:R (3.2) BS01 rna ? GO:0002181 ... P0CX82 32855298
    580641 6xir:R (3.2) BS02 rna ? GO:0002181 ... P0CX82 32855298
    580642 6xir:S (3.2) BS01 rna ? GO:0002181 ... P0CX23 32855298
    580643 6xir:S (3.2) BS02 rna ? GO:0002181 ... P0CX23 32855298
    580644 6xir:T (3.2) BS01 rna ? GO:0002181 ... Q02753 32855298
    580645 6xir:T (3.2) BS02 rna ? GO:0002181 ... Q02753 32855298
    580646 6xir:U (3.2) BS01 rna ? GO:0002181 ... P05749 32855298
    580647 6xir:V (3.2) BS01 rna ? GO:0002181 ... P0CX41 32855298
    580648 6xir:V (3.2) BS02 rna ? GO:0002181 ... P0CX41 32855298
    580649 6xir:W (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580650 6xir:X (3.2) BS01 rna ? GO:0000027 ... P04456 32855298
    580651 6xir:X (3.2) BS02 rna ? GO:0000027 ... P04456 32855298
    580652 6xir:Y (3.2) BS01 rna ? GO:0002181 ... P05743 32855298
    580653 6xir:Y (3.2) BS02 rna ? GO:0002181 ... P05743 32855298
    580654 6xir:Z (3.2) BS01 rna ? GO:0002181 ... P0C2H6 32855298
    580655 6xir:a (3.2) BS01 rna ? GO:0002181 ... P02406 32855298
    580656 6xir:b (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580657 6xir:c (3.2) BS01 rna ? GO:0002181 ... P14120 32855298
    580658 6xir:d (3.2) BS01 rna ? GO:0002181 ... P0C2H8 32855298
    580659 6xir:e (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580660 6xir:f (3.2) BS01 rna ? GO:0000027 ... P05744 32855298
    580661 6xir:g (3.2) BS01 rna ? GO:0002181 ... P87262 32855298
    580662 6xir:h (3.2) BS01 rna ? GO:0000463 ... P0CX84 32855298
    580663 6xir:h (3.2) BS02 rna ? GO:0000463 ... P0CX84 32855298
    580664 6xir:i (3.2) BS01 rna ? GO:0002181 ... P05745 32855298
    580665 6xir:j (3.2) BS01 rna ? GO:0000448 ... P49166 32855298
    580666 6xir:j (3.2) BS02 rna ? GO:0000448 ... P49166 32855298
    580667 6xir:j (3.2) BS03 ZN ? GO:0000448 ... P49166 32855298
    580668 6xir:k (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580669 6xir:l (3.2) BS01 rna ? GO:0002181 ... P04650 32855298
    580670 6xir:l (3.2) BS02 rna ? GO:0002181 ... P04650 32855298
    580671 6xir:o (3.2) BS01 rna ? GO:0002181 ... P0CX27 32855298
    580672 6xir:o (3.2) BS02 ZN ? GO:0002181 ... P0CX27 32855298
    580673 6xir:p (3.2) BS01 rna ? GO:0002181 ... P0CX25 32855298
    580674 6xir:p (3.2) BS02 ZN ? GO:0002181 ... P0CX25 32855298
    580675 6xir:q (3.2) BS01 rna ? GO:0000028 ... P32905 32855298
    580676 6xir:r (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580677 6xir:s (3.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580678 6xir:t (3.2) BS01 rna ? GO:0003723 ... N/A 32855298
    580679 6xir:u (3.2) BS01 rna ? GO:0002181 ... P0CX35 32855298
    580680 6xir:v (3.2) BS01 rna ? GO:0003723 ... A0A1L4AA68 32855298
    580681 6xir:w (3.2) BS01 rna ? GO:0000462 ... P0CX37 32855298
    580682 6xir:x (3.2) BS01 rna ? GO:0002181 ... P26786 32855298
    580683 6xir:y (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    580684 6xir:y (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    580685 6xir:z (3.2) BS01 rna ? GO:0000462 ... O13516 32855298
    580686 6xit:A (3.3) BS01 PIO ? GO:0005242 ... P48542 32844743
    580687 6xit:B (3.3) BS01 PIO ? GO:0005242 ... P48542 32844743
    580688 6xit:C (3.3) BS01 PIO ? GO:0005242 ... P48542 32844743
    580689 6xit:D (3.3) BS01 PIO ? GO:0005242 ... P48542 32844743
    580690 6xiu:A (3.0) BS01 DKA ? GO:0003677 ... P16114 34341412
    580691 6xiu:B (3.0) BS01 DKA ? GO:0003677 ... P16114 34341412
    580692 6xiv:A (2.8) BS01 DKA ? GO:0003677 ... P16114 34341412
    580693 6xiv:B (2.8) BS01 DKA ? GO:0003677 ... P16114 34341412
    580694 6xiw:A (2.8) BS01 Y01 ? GO:0005216 ... Q8IZF0 32698188
    580695 6xiw:A (2.8) BS02 Y01 ? GO:0005216 ... Q8IZF0 32698188
    580696 6xiw:A (2.8) BS03 Y01 ? GO:0005216 ... Q8IZF0 32698188
    580697 6xiy:A (2.307) BS01 Q3M ? N/A Q8IUN9 33724805
    580698 6xiy:A (2.307) BS02 CA ? N/A Q8IUN9 33724805
    580699 6xiy:A (2.307) BS03 CA ? N/A Q8IUN9 33724805
    580700 6xiy:A (2.307) BS04 CA ? N/A Q8IUN9 33724805
    580701 6xiz:A (1.8) BS01 CU N/A GO:0005507 ... N/A 33635570
    580702 6xiz:A (1.8) BS02 CU N/A GO:0005507 ... N/A 33635570
    580703 6xiz:B (1.8) BS01 CU N/A GO:0005507 ... N/A 33635570
    580704 6xiz:B (1.8) BS02 CU N/A GO:0005507 ... N/A 33635570
    580705 6xj0:A (2.34) BS01 CU N/A GO:0005507 ... N/A 33635570
    580706 6xj0:A (2.34) BS02 CU N/A GO:0005507 ... N/A 33635570
    580707 6xj3:A (1.85) BS01 NXL 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    580708 6xj3:A (1.85) BS02 CA 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    580709 6xj3:B (1.85) BS01 NXL 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    580710 6xj3:B (1.85) BS02 CA 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    580711 6xj3:C (1.85) BS01 NXL 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    580712 6xj3:D (1.85) BS01 NXL 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    580713 6xj4:B (1.78) BS01 C5J 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580714 6xj5:A (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580715 6xj5:A (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580716 6xj5:A (3.11) BS03 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580717 6xj5:B (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580718 6xj5:B (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580719 6xj5:C (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580720 6xj5:C (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580721 6xj5:D (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580722 6xj5:D (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580723 6xj5:D (3.11) BS03 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580724 6xj5:E (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580725 6xj5:E (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580726 6xj5:F (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580727 6xj5:F (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580728 6xj5:G (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580729 6xj5:G (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580730 6xj5:H (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580731 6xj5:H (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    580732 6xj8:A (2.05) BS01 8YF 3.5.2.6 GO:0008800 ... Q9F663 33273017 MOAD: Kd=220uM
    580733 6xjd:A (6.8) BS01 dna ? GO:0000786 ... Q71DI3 32911481
    580734 6xjd:A (6.8) BS02 dna ? GO:0000786 ... Q71DI3 32911481
    580735 6xjd:B (6.8) BS01 dna ? GO:0000781 ... P62805 32911481
    580736 6xjd:B (6.8) BS02 dna ? GO:0000781 ... P62805 32911481
    580737 6xjd:C (6.8) BS01 dna ? GO:0000786 ... P0C0S8 32911481
    580738 6xjd:C (6.8) BS02 dna ? GO:0000786 ... P0C0S8 32911481
    580739 6xjd:D (6.8) BS01 dna ? GO:0000786 ... P62807 32911481
    580740 6xjd:D (6.8) BS02 dna ? GO:0000786 ... P62807 32911481
    580741 6xjd:E (6.8) BS01 dna ? GO:0000786 ... Q71DI3 32911481
    580742 6xjd:E (6.8) BS02 dna ? GO:0000786 ... Q71DI3 32911481
    580743 6xjd:F (6.8) BS01 dna ? GO:0000781 ... P62805 32911481
    580744 6xjd:F (6.8) BS02 dna ? GO:0000781 ... P62805 32911481
    580745 6xjd:G (6.8) BS01 dna ? GO:0000786 ... P0C0S8 32911481
    580746 6xjd:G (6.8) BS02 dna ? GO:0000786 ... P0C0S8 32911481
    580747 6xjd:H (6.8) BS01 dna ? GO:0000786 ... P62807 32911481
    580748 6xjd:H (6.8) BS02 dna ? GO:0000786 ... P62807 32911481
    580749 6xjd:K (6.8) BS01 ZN 2.7.7.86 N/A Q8C6L5 32911481
    580750 6xjd:L (6.8) BS01 ZN 2.7.7.86 N/A Q8C6L5 32911481
    580751 6xje:A (1.45) BS01 TIU 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580752 6xje:A (1.45) BS02 TIU 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580753 6xje:B (1.45) BS01 TIU 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580754 6xje:B (1.45) BS02 TIU 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580755 6xje:C (1.45) BS01 TIU 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580756 6xje:C (1.45) BS02 TIU 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580757 6xje:D (1.45) BS01 TIU 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580758 6xje:D (1.45) BS02 TIU 3.5.1.- GO:0016787 ... A0A2N6JFX7 33172891
    580759 6xjh:C (3.6) BS01 AGS ? GO:0005524 ... X5EJW5 32998902
    580760 6xjh:C (3.6) BS02 MG ? GO:0005524 ... X5EJW5 32998902
    580761 6xjh:C (3.6) BS03 AGS ? GO:0005524 ... X5EJW5 32998902
    580762 6xjh:D (3.6) BS01 AGS ? GO:0005524 ... X5EJW5 32998902
    580763 6xjh:D (3.6) BS02 AGS ? GO:0005524 ... X5EJW5 32998902
    580764 6xjh:D (3.6) BS03 MG ? GO:0005524 ... X5EJW5 32998902
    580765 6xji:C (4.0) BS01 AGS ? GO:0005524 ... X5EJW5 32998902
    580766 6xji:C (4.0) BS02 MG ? GO:0005524 ... X5EJW5 32998902
    580767 6xji:C (4.0) BS03 AGS ? GO:0005524 ... X5EJW5 32998902
    580768 6xji:D (4.0) BS01 AGS ? GO:0005524 ... X5EJW5 32998902
    580769 6xji:D (4.0) BS02 AGS ? GO:0005524 ... X5EJW5 32998902
    580770 6xji:D (4.0) BS03 MG ? GO:0005524 ... X5EJW5 32998902
    580771 6xjj:A (2.7) BS01 FE 1.14.-.- GO:0044283 ... B8M9K5 N/A
    580772 6xjk:A (2.02351) BS01 V4D 2.7.10.2 GO:0004672 ... O60674 33048555
    580773 6xjm:A (2.05) BS01 C5J ? GO:0016787 ... H8ZKV9 33172891
    580774 6xjm:B (2.05) BS01 C5J ? GO:0016787 ... H8ZKV9 33172891
    580775 6xjm:C (2.05) BS01 C5J ? GO:0016787 ... H8ZKV9 33172891
    580776 6xjm:D (2.05) BS01 C5J ? GO:0016787 ... H8ZKV9 33172891
    580777 6xjn:A (2.2) BS01 GDP 3.6.5.- GO:0003924 ... Q8WXF7 34546351
    580778 6xjn:A (2.2) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 34546351
    580779 6xjo:A (2.1) BS01 GDP 3.6.5.- GO:0003924 ... Q6DD88 34546351
    580780 6xjo:A (2.1) BS02 MG 3.6.5.- GO:0003924 ... Q6DD88 34546351
    580781 6xjo:B (2.1) BS01 GDP 3.6.5.- GO:0003924 ... Q6DD88 34546351
    580782 6xjo:B (2.1) BS02 MG 3.6.5.- GO:0003924 ... Q6DD88 34546351
    580783 6xjp:A (2.802) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    580784 6xjp:A (2.802) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    580785 6xjp:C (2.802) BS01 K85 ? GO:0000055 ... P30822 33451349
    580786 6xjq:C (1.708) BS01 rna N/A N/A N/A 35058645
    580787 6xjq:D (1.708) BS01 rna N/A N/A N/A 35058645
    580788 6xjq:D (1.708) BS02 rna N/A N/A N/A 35058645
    580789 6xjq:H (1.708) BS01 rna N/A N/A N/A 35058645
    580790 6xjq:H (1.708) BS02 rna N/A N/A N/A 35058645
    580791 6xjq:L (1.708) BS01 rna N/A N/A N/A 35058645
    580792 6xjr:A (1.941) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    580793 6xjr:A (1.941) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    580794 6xjr:C (1.941) BS01 K85 ? GO:0000055 ... P30822 33451349
    580795 6xjs:A (1.942) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    580796 6xjs:A (1.942) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    580797 6xjs:C (1.942) BS01 V6A ? GO:0000055 ... P30822 33451349
    580798 6xjt:A (2.406) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    580799 6xjt:A (2.406) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    580800 6xjt:C (2.406) BS01 6L8 ? GO:0000055 ... P30822 33451349

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).