SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    581001 6xl8:B (2.34) BS05 BDP 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    581002 6xl8:B (2.34) BS06 A3P 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    581003 6xl9:C (2.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581004 6xl9:C (2.5) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581005 6xl9:C (2.5) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581006 6xl9:D (2.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581007 6xl9:D (2.5) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581008 6xl9:D (2.5) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581009 6xl9:D (2.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581010 6xl9:F (2.5) BS01 dna ? GO:0000345 ... P00579 33976201
    581011 6xl9:F (2.5) BS02 dna ? GO:0000345 ... P00579 33976201
    581012 6xl9:F (2.5) BS03 118 ? GO:0000345 ... P00579 33976201
    581013 6xl9:G (2.5) BS01 dna N/A GO:0003677 ... N/A 33976201
    581014 6xl9:G (2.5) BS02 dna N/A GO:0003677 ... N/A 33976201
    581015 6xl9:G (2.5) BS03 118 N/A GO:0003677 ... N/A 33976201
    581016 6xl9:H (2.5) BS01 dna N/A GO:0003677 ... N/A 33976201
    581017 6xl9:H (2.5) BS02 dna N/A GO:0003677 ... N/A 33976201
    581018 6xl9:H (2.5) BS03 118 N/A GO:0003677 ... N/A 33976201
    581019 6xla:G (3.1) BS01 dna N/A GO:0003677 ... N/A 33976201
    581020 6xla:G (3.1) BS02 dna N/A GO:0003677 ... N/A 33976201
    581021 6xla:G (3.1) BS03 118 N/A GO:0003677 ... N/A 33976201
    581022 6xla:H (3.1) BS01 dna N/A GO:0003677 ... N/A 33976201
    581023 6xla:H (3.1) BS02 dna N/A GO:0003677 ... N/A 33976201
    581024 6xla:H (3.1) BS03 118 N/A GO:0003677 ... N/A 33976201
    581025 6xlc:A (3.66) BS01 ANP ? GO:0000492 ... P15108 N/A
    581026 6xlc:B (3.66) BS01 ANP ? GO:0000492 ... P15108 N/A
    581027 6xlc:B (3.66) BS02 MG ? GO:0000492 ... P15108 N/A
    581028 6xld:A (3.66) BS01 ANP ? GO:0000492 ... P15108 N/A
    581029 6xld:A (3.66) BS02 MG ? GO:0000492 ... P15108 N/A
    581030 6xld:B (3.66) BS01 ANP ? GO:0000492 ... P15108 N/A
    581031 6xld:B (3.66) BS02 MG ? GO:0000492 ... P15108 N/A
    581032 6xle:A (2.74) BS01 ANP ? GO:0000492 ... P15108 N/A
    581033 6xle:A (2.74) BS02 MG ? GO:0000492 ... P15108 N/A
    581034 6xle:B (2.74) BS01 ANP ? GO:0000492 ... P15108 N/A
    581035 6xle:B (2.74) BS02 MG ? GO:0000492 ... P15108 N/A
    581036 6xlf:A (3.15) BS01 ANP ? GO:0000492 ... P15108 N/A
    581037 6xlf:A (3.15) BS02 MG ? GO:0000492 ... P15108 N/A
    581038 6xlf:B (3.15) BS01 ANP ? GO:0000492 ... P15108 N/A
    581039 6xlg:A (2.71) BS01 AGS ? GO:0000492 ... P15108 N/A
    581040 6xlg:A (2.71) BS02 MG ? GO:0000492 ... P15108 N/A
    581041 6xlg:B (2.71) BS01 AGS ? GO:0000492 ... P15108 N/A
    581042 6xlg:B (2.71) BS02 MG ? GO:0000492 ... P15108 N/A
    581043 6xlh:A (2.83) BS01 AGS ? GO:0000492 ... P15108 N/A
    581044 6xlh:A (2.83) BS02 MG ? GO:0000492 ... P15108 N/A
    581045 6xlh:B (2.83) BS01 ADP ? GO:0000492 ... P15108 N/A
    581046 6xlh:B (2.83) BS02 MG ? GO:0000492 ... P15108 N/A
    581047 6xli:A (2.0) BS01 peptide N/A N/A N/A 32894244
    581048 6xli:A (2.0) BS02 peptide N/A N/A N/A 32894244
    581049 6xli:B (2.0) BS01 peptide N/A N/A N/A 32894244
    581050 6xli:C (2.0) BS01 peptide N/A N/A N/A 32894244
    581051 6xli:D (2.0) BS01 peptide N/A N/A N/A 32894244
    581052 6xli:D (2.0) BS02 peptide N/A N/A N/A 32894244
    581053 6xli:H (2.0) BS01 peptide N/A N/A N/A 32894244
    581054 6xli:L (2.0) BS01 peptide N/A N/A N/A 32894244
    581055 6xlj:C (2.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581056 6xlj:C (2.7) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581057 6xlj:C (2.7) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581058 6xlj:C (2.7) BS04 1N7 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581059 6xlj:C (2.7) BS05 1N7 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581060 6xlj:C (2.7) BS06 118 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581061 6xlj:D (2.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581062 6xlj:D (2.7) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581063 6xlj:D (2.7) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581064 6xlj:D (2.7) BS04 118 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581065 6xlj:D (2.7) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581066 6xlj:D (2.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581067 6xlj:D (2.7) BS07 1N7 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581068 6xlj:F (2.7) BS01 dna ? GO:0000345 ... P00579 33976201
    581069 6xlj:F (2.7) BS02 dna ? GO:0000345 ... P00579 33976201
    581070 6xlj:G (2.7) BS01 dna N/A GO:0003677 ... N/A 33976201
    581071 6xlj:G (2.7) BS02 dna N/A GO:0003677 ... N/A 33976201
    581072 6xlj:G (2.7) BS03 1N7 N/A GO:0003677 ... N/A 33976201
    581073 6xlj:G (2.7) BS04 118 N/A GO:0003677 ... N/A 33976201
    581074 6xlj:H (2.7) BS01 dna N/A GO:0003677 ... N/A 33976201
    581075 6xlj:H (2.7) BS02 dna N/A GO:0003677 ... N/A 33976201
    581076 6xlj:H (2.7) BS03 1N7 N/A GO:0003677 ... N/A 33976201
    581077 6xlj:H (2.7) BS04 118 N/A GO:0003677 ... N/A 33976201
    581078 6xlk:G (3.3) BS01 dna N/A GO:0003677 ... N/A 33976201
    581079 6xlk:G (3.3) BS02 dna N/A GO:0003677 ... N/A 33976201
    581080 6xlk:G (3.3) BS03 1N7 N/A GO:0003677 ... N/A 33976201
    581081 6xlk:G (3.3) BS04 118 N/A GO:0003677 ... N/A 33976201
    581082 6xlk:H (3.3) BS01 dna N/A GO:0003677 ... N/A 33976201
    581083 6xlk:H (3.3) BS02 dna N/A GO:0003677 ... N/A 33976201
    581084 6xlk:H (3.3) BS03 1N7 N/A GO:0003677 ... N/A 33976201
    581085 6xlk:H (3.3) BS04 118 N/A GO:0003677 ... N/A 33976201
    581086 6xll:C (2.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581087 6xll:C (2.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581088 6xll:C (2.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581089 6xll:C (2.7) BS04 1N7 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581090 6xll:C (2.7) BS05 1N7 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581091 6xll:D (2.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581092 6xll:D (2.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581093 6xll:D (2.7) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581094 6xll:D (2.7) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581095 6xll:D (2.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581096 6xll:F (2.7) BS01 dna ? GO:0000345 ... P00579 33976201
    581097 6xll:F (2.7) BS02 dna ? GO:0000345 ... P00579 33976201
    581098 6xll:F (2.7) BS03 rna ? GO:0000345 ... P00579 33976201
    581099 6xlm:C (3.2) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581100 6xlm:C (3.2) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581101 6xlm:C (3.2) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581102 6xlm:C (3.2) BS04 1N7 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581103 6xlm:C (3.2) BS05 1N7 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581104 6xlm:D (3.2) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581105 6xlm:D (3.2) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581106 6xlm:D (3.2) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581107 6xlm:D (3.2) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581108 6xlm:D (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581109 6xln:C (2.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581110 6xln:C (2.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581111 6xln:C (2.8) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581112 6xln:C (2.8) BS04 1N7 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581113 6xln:C (2.8) BS05 1N7 2.7.7.6 GO:0000345 ... P0A8V2 33976201
    581114 6xln:D (2.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581115 6xln:D (2.8) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581116 6xln:D (2.8) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581117 6xln:D (2.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    581118 6xlo:A (2.493) BS01 V5J 2.7.11.1 GO:0004672 ... P15056 33780623
    581119 6xlo:B (2.493) BS01 V5J 2.7.11.1 GO:0004672 ... P15056 33780623
    581120 6xlp:A (2.0) BS01 VJ1 ? GO:0005515 ... P0AD27 32788728
    581121 6xlr:A (1.23) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 33091303
    581122 6xlr:A (1.23) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    581123 6xls:A (1.797) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 33091303
    581124 6xls:A (1.797) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    581125 6xlt:A (1.478) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 33091303
    581126 6xlt:A (1.478) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    581127 6xlv:A (1.4) BS01 rna ? GO:0003676 ... P26368 33020180
    581128 6xlw:A (1.5) BS01 rna ? GO:0003676 ... P26368 33020180
    581129 6xlx:A (1.7) BS01 rna ? GO:0003676 ... P26368 33020180
    581130 6xlz:H (2.8) BS01 peptide N/A N/A N/A 34559844
    581131 6xlz:H (2.8) BS02 peptide N/A N/A N/A 34559844
    581132 6xlz:L (2.8) BS01 peptide N/A N/A N/A 34559844
    581133 6xlz:L (2.8) BS02 BU3 N/A N/A N/A 34559844
    581134 6xlz:L (2.8) BS03 BU3 N/A N/A N/A 34559844
    581135 6xm6:A (1.45) BS01 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581136 6xm7:A (1.45) BS01 V5M 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581137 6xm7:A (1.45) BS02 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581138 6xm7:A (1.45) BS03 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581139 6xm7:A (1.45) BS04 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581140 6xm8:A (1.85) BS01 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581141 6xm8:A (1.85) BS02 V5P 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581142 6xm9:A (1.651) BS01 V55 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581143 6xm9:A (1.651) BS02 CO 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581144 6xma:A (1.45) BS01 FE 1.13.11.- GO:0010436 ... G2IQT9 33965373
    581145 6xmc:A (1.85) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 N/A
    581146 6xmc:A (1.85) BS02 V5G 1.14.14.47 GO:0004517 ... O34453 N/A
    581147 6xmf:A (3.1) BS01 rna N/A N/A N/A 33495647
    581148 6xmf:A (3.1) BS02 ZN N/A N/A N/A 33495647
    581149 6xmg:A (4.8) BS01 rna N/A N/A N/A 33495647
    581150 6xmg:A (4.8) BS02 rna N/A N/A N/A 33495647
    581151 6xmg:A (4.8) BS03 ZN N/A N/A N/A 33495647
    581152 6xmh:A (1.95) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581153 6xmh:A (1.95) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581154 6xmh:B (1.95) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581155 6xmh:B (1.95) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581156 6xmk:A (1.7) BS01 QYS 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 32747425 BindingDB: IC50=450nM
    581157 6xmk:B (1.7) BS01 QYS 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 32747425 BindingDB: IC50=450nM
    581158 6xml:A (1.88) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581159 6xml:A (1.88) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581160 6xml:B (1.88) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581161 6xml:B (1.88) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581162 6xmm:A (2.11) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581163 6xmm:A (2.11) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581164 6xmm:B (2.11) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581165 6xmm:B (2.11) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581166 6xmn:A (-1.00) BS01 peptide ? GO:0005576 ... P10145 N/A
    581167 6xmo:A (2.6) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581168 6xmo:A (2.6) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581169 6xmo:B (2.6) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581170 6xmo:B (2.6) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    581171 6xmq:A (3.7) BS01 ACP 7.4.2.- GO:0000166 ... P39986 32973005
    581172 6xmq:A (3.7) BS02 MG 7.4.2.- GO:0000166 ... P39986 32973005
    581173 6xmr:A (1.7) BS01 MN 3.4.13.9 GO:0016805 ... A8WBX8 28179139
    581174 6xmr:A (1.7) BS02 MN 3.4.13.9 GO:0016805 ... A8WBX8 28179139
    581175 6xmr:B (1.7) BS01 MN 3.4.13.9 GO:0016805 ... A8WBX8 28179139
    581176 6xmr:B (1.7) BS02 MN 3.4.13.9 GO:0016805 ... A8WBX8 28179139
    581177 6xms:A (3.4) BS01 MG 7.4.2.- GO:0000166 ... P39986 32973005
    581178 6xms:A (3.4) BS02 ALF 7.4.2.- GO:0000166 ... P39986 32973005
    581179 6xmt:A (3.3) BS01 BEF 7.4.2.- GO:0000166 ... P39986 32973005
    581180 6xmt:A (3.3) BS02 MG 7.4.2.- GO:0000166 ... P39986 32973005
    581181 6xmu:A (3.3) BS01 BEF 7.4.2.- GO:0000166 ... P39986 32973005
    581182 6xmu:A (3.3) BS02 MG 7.4.2.- GO:0000166 ... P39986 32973005
    581183 6xmx:A (3.7) BS01 U52 ? N/A P41182 33208943
    581184 6xmx:A (3.7) BS02 U52 ? N/A P41182 33208943
    581185 6xmx:A (3.7) BS03 U52 ? N/A P41182 33208943
    581186 6xmx:B (3.7) BS01 U52 ? N/A P41182 33208943
    581187 6xmx:B (3.7) BS02 U52 ? N/A P41182 33208943
    581188 6xmx:B (3.7) BS03 U52 ? N/A P41182 33208943
    581189 6xmx:C (3.7) BS01 U52 ? N/A P41182 33208943
    581190 6xmx:C (3.7) BS02 U52 ? N/A P41182 33208943
    581191 6xmx:D (3.7) BS01 U52 ? N/A P41182 33208943
    581192 6xmx:E (3.7) BS01 U52 ? N/A P41182 33208943
    581193 6xmx:E (3.7) BS02 U52 ? N/A P41182 33208943
    581194 6xmx:F (3.7) BS01 U52 ? N/A P41182 33208943
    581195 6xmx:F (3.7) BS02 U52 ? N/A P41182 33208943
    581196 6xmx:G (3.7) BS01 U52 ? N/A P41182 33208943
    581197 6xmx:G (3.7) BS02 U52 ? N/A P41182 33208943
    581198 6xmx:G (3.7) BS03 U52 ? N/A P41182 33208943
    581199 6xmx:H (3.7) BS01 U52 ? N/A P41182 33208943
    581200 6xmx:H (3.7) BS02 U52 ? N/A P41182 33208943

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).