SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    582401 6xu6:CF (3.5) BS02 rna ? GO:0000463 ... P32100 34283226
    582402 6xu6:CG (3.5) BS01 rna ? GO:0003723 ... P46223 34283226
    582403 6xu6:CG (3.5) BS02 rna ? GO:0003723 ... P46223 34283226
    582404 6xu6:CH (3.5) BS01 rna ? GO:0002181 ... P50882 34283226
    582405 6xu6:CI (3.5) BS01 rna ? GO:0002181 ... O61231 34283226
    582406 6xu6:CI (3.5) BS02 rna ? GO:0002181 ... O61231 34283226
    582407 6xu6:CJ (3.5) BS01 rna ? GO:0000228 ... P46222 34283226
    582408 6xu6:CJ (3.5) BS02 rna ? GO:0000228 ... P46222 34283226
    582409 6xu6:CL (3.5) BS01 rna ? GO:0002181 ... P41126 34283226
    582410 6xu6:CL (3.5) BS02 rna ? GO:0002181 ... P41126 34283226
    582411 6xu6:CM (3.5) BS01 rna ? GO:0002181 ... P55841 34283226
    582412 6xu6:CN (3.5) BS01 rna ? GO:0002181 ... O17445 34283226
    582413 6xu6:CN (3.5) BS02 rna ? GO:0002181 ... O17445 34283226
    582414 6xu6:CO (3.5) BS01 rna ? GO:0002181 ... Q9VNE9 34283226
    582415 6xu6:CP (3.5) BS01 rna ? GO:0002181 ... Q9W3W8 34283226
    582416 6xu6:CP (3.5) BS02 rna ? GO:0002181 ... Q9W3W8 34283226
    582417 6xu6:CQ (3.5) BS01 rna ? GO:0002181 ... Q9VS34 34283226
    582418 6xu6:CR (3.5) BS01 rna ? GO:0002181 ... P36241 34283226
    582419 6xu6:CR (3.5) BS02 rna ? GO:0002181 ... P36241 34283226
    582420 6xu6:CS (3.5) BS01 rna ? GO:0002181 ... P41093 34283226
    582421 6xu6:CS (3.5) BS02 rna ? GO:0002181 ... P41093 34283226
    582422 6xu6:CT (3.5) BS01 rna ? GO:0002181 ... Q9V9M7 34283226
    582423 6xu6:CT (3.5) BS02 rna ? GO:0002181 ... Q9V9M7 34283226
    582424 6xu6:CU (3.5) BS01 rna ? GO:0003735 ... E2JE76 34283226
    582425 6xu6:CV (3.5) BS01 rna ? GO:0002181 ... P48159 34283226
    582426 6xu6:CW (3.5) BS01 rna ? GO:0003735 ... Q9VJY6 34283226
    582427 6xu6:CX (3.5) BS01 rna ? GO:0003735 ... A1A6X4 34283226
    582428 6xu6:CX (3.5) BS02 rna ? GO:0003735 ... A1A6X4 34283226
    582429 6xu6:CX (3.5) BS03 rna ? GO:0003735 ... A1A6X4 34283226
    582430 6xu6:CY (3.5) BS01 rna ? GO:0003723 ... Q9VVU2 34283226
    582431 6xu6:CY (3.5) BS02 rna ? GO:0003723 ... Q9VVU2 34283226
    582432 6xu6:CZ (3.5) BS01 rna ? GO:0002181 ... Q9VBN5 34283226
    582433 6xu6:Ca (3.5) BS01 rna ? GO:0002181 ... P41092 34283226
    582434 6xu6:Cb (3.5) BS01 rna ? GO:0002181 ... Q24154 34283226
    582435 6xu6:Cc (3.5) BS01 rna ? GO:0002181 ... Q9VJ19 34283226
    582436 6xu6:Cd (3.5) BS01 rna ? GO:0003735 ... Q9V597 34283226
    582437 6xu6:Ce (3.5) BS01 rna ? GO:0000228 ... P04359 34283226
    582438 6xu6:Cf (3.5) BS01 rna ? GO:0002181 ... Q9VNB9 34283226
    582439 6xu6:Cg (3.5) BS01 rna ? GO:0003735 ... Q9VHE5 34283226
    582440 6xu6:Ch (3.5) BS01 rna ? GO:0000463 ... Q9W499 34283226
    582441 6xu6:Ch (3.5) BS02 rna ? GO:0000463 ... Q9W499 34283226
    582442 6xu6:Ci (3.5) BS01 rna ? GO:0000228 ... P49630 34283226
    582443 6xu6:Cj (3.5) BS01 rna ? GO:0002181 ... Q9W1U6 34283226
    582444 6xu6:Cj (3.5) BS02 rna ? GO:0002181 ... Q9W1U6 34283226
    582445 6xu6:Ck (3.5) BS01 rna ? GO:0002181 ... Q9W5N2 34283226
    582446 6xu6:Cl (3.5) BS01 rna ? GO:0002181 ... O16130 34283226
    582447 6xu6:Cl (3.5) BS02 rna ? GO:0002181 ... O16130 34283226
    582448 6xu6:Cm (3.5) BS01 rna ? GO:0003735 ... P18101 34283226
    582449 6xu6:Co (3.5) BS01 rna ? GO:0003735 ... C5WLN8 34283226
    582450 6xu6:Cp (3.5) BS01 rna ? GO:0002181 ... Q9VMU4 34283226
    582451 6xu6:Cr (3.5) BS01 rna ? GO:0002181 ... Q9VZS5 34283226
    582452 6xu6:Cz (3.5) BS01 rna ? GO:0002181 ... Q9VTP4 34283226
    582453 6xu6:DA (3.5) BS01 rna ? N/A Q9VQI5 34283226
    582454 6xu6:DA (3.5) BS02 rna ? N/A Q9VQI5 34283226
    582455 6xu7:AA (4.9) BS01 rna ? GO:0003735 ... P38979 34283226
    582456 6xu7:AB (4.9) BS01 rna ? GO:0003735 ... P55830 34283226
    582457 6xu7:AC (4.9) BS01 rna ? GO:0003723 ... P31009 34283226
    582458 6xu7:AD (4.9) BS01 rna ? GO:0000278 ... Q06559 34283226
    582459 6xu7:AD (4.9) BS02 rna ? GO:0000278 ... Q06559 34283226
    582460 6xu7:AE (4.9) BS01 rna ? GO:0002181 ... P41042 34283226
    582461 6xu7:AF (4.9) BS01 rna ? GO:0003723 ... Q24186 34283226
    582462 6xu7:AG (4.9) BS01 rna ? GO:0002181 ... P29327 34283226
    582463 6xu7:AH (4.9) BS01 rna ? GO:0002181 ... Q9VA91 34283226
    582464 6xu7:AI (4.9) BS01 rna ? GO:0000462 ... Q8MLY8 34283226
    582465 6xu7:AI (4.9) BS02 rna ? GO:0000462 ... Q8MLY8 34283226
    582466 6xu7:AJ (4.9) BS01 rna ? GO:0000228 ... P55935 34283226
    582467 6xu7:AK (4.9) BS01 rna ? N/A Q9VWG3 34283226
    582468 6xu7:AL (4.9) BS01 rna ? GO:0000228 ... Q0E9B6 34283226
    582469 6xu7:AM (4.9) BS01 rna ? N/A P80455 34283226
    582470 6xu7:AN (4.9) BS01 rna ? GO:0000228 ... Q03334 34283226
    582471 6xu7:AN (4.9) BS02 rna ? GO:0000228 ... Q03334 34283226
    582472 6xu7:AO (4.9) BS01 rna ? GO:0003735 ... C0HKA0 34283226
    582473 6xu7:AP (4.9) BS01 rna ? GO:0003723 ... Q7JZW2 34283226
    582474 6xu7:AQ (4.9) BS01 rna ? GO:0000462 ... Q9W237 34283226
    582475 6xu7:AR (4.9) BS01 rna ? GO:0002181 ... P17704 34283226
    582476 6xu7:AS (4.9) BS01 rna ? GO:0000228 ... P41094 34283226
    582477 6xu7:AT (4.9) BS01 rna ? GO:0000028 ... P39018 34283226
    582478 6xu7:AU (4.9) BS01 rna ? GO:0003723 ... P55828 34283226
    582479 6xu7:AW (4.9) BS01 rna ? GO:0002181 ... P48149 34283226
    582480 6xu7:AX (4.9) BS01 rna ? GO:0002181 ... Q8T3U2 34283226
    582481 6xu7:AY (4.9) BS01 rna ? GO:0002181 ... Q9W229 34283226
    582482 6xu7:AZ (4.9) BS01 rna ? N/A P48588 34283226
    582483 6xu7:Aa (4.9) BS01 rna ? GO:0002181 ... P13008 34283226
    582484 6xu7:Ab (4.9) BS01 rna ? GO:0000028 ... Q9VBU9 34283226
    582485 6xu7:Ac (4.9) BS01 rna ? GO:0000028 ... Q9W334 34283226
    582486 6xu7:Ad (4.9) BS01 rna ? GO:0002181 ... Q9VH69 34283226
    582487 6xu7:Ae (4.9) BS01 rna ? GO:0003735 ... Q7JYY0 34283226
    582488 6xu7:Af (4.9) BS01 rna ? GO:0003735 ... P15357 34283226
    582489 6xu7:Ag (4.9) BS01 rna ? GO:0000423 ... O18640 34283226
    582490 6xu7:CA (4.9) BS01 rna ? GO:0000228 ... Q9V3G1 34283226
    582491 6xu7:CA (4.9) BS02 rna ? GO:0000228 ... Q9V3G1 34283226
    582492 6xu7:CB (4.9) BS01 rna ? GO:0002181 ... O16797 34283226
    582493 6xu7:CC (4.9) BS01 rna ? GO:0002181 ... P09180 34283226
    582494 6xu7:CC (4.9) BS02 rna ? GO:0002181 ... P09180 34283226
    582495 6xu7:CD (4.9) BS01 rna ? GO:0000027 ... Q9W5R8 34283226
    582496 6xu7:CD (4.9) BS02 rna ? GO:0000027 ... Q9W5R8 34283226
    582497 6xu7:CE (4.9) BS01 rna ? GO:0002181 ... Q9V9W2 34283226
    582498 6xu7:CF (4.9) BS01 rna ? GO:0000463 ... P32100 34283226
    582499 6xu7:CF (4.9) BS02 rna ? GO:0000463 ... P32100 34283226
    582500 6xu7:CG (4.9) BS01 rna ? GO:0003723 ... P46223 34283226
    582501 6xu7:CG (4.9) BS02 rna ? GO:0003723 ... P46223 34283226
    582502 6xu7:CH (4.9) BS01 rna ? GO:0002181 ... P50882 34283226
    582503 6xu7:CI (4.9) BS01 rna ? GO:0002181 ... O61231 34283226
    582504 6xu7:CI (4.9) BS02 rna ? GO:0002181 ... O61231 34283226
    582505 6xu7:CI (4.9) BS03 rna ? GO:0002181 ... O61231 34283226
    582506 6xu7:CJ (4.9) BS01 rna ? GO:0000228 ... P46222 34283226
    582507 6xu7:CJ (4.9) BS02 rna ? GO:0000228 ... P46222 34283226
    582508 6xu7:CJ (4.9) BS03 rna ? GO:0000228 ... P46222 34283226
    582509 6xu7:CL (4.9) BS01 rna ? GO:0002181 ... P41126 34283226
    582510 6xu7:CL (4.9) BS02 rna ? GO:0002181 ... P41126 34283226
    582511 6xu7:CM (4.9) BS01 rna ? GO:0002181 ... P55841 34283226
    582512 6xu7:CN (4.9) BS01 rna ? GO:0002181 ... O17445 34283226
    582513 6xu7:CN (4.9) BS02 rna ? GO:0002181 ... O17445 34283226
    582514 6xu7:CO (4.9) BS01 rna ? GO:0002181 ... Q9VNE9 34283226
    582515 6xu7:CP (4.9) BS01 rna ? GO:0002181 ... Q9W3W8 34283226
    582516 6xu7:CP (4.9) BS02 rna ? GO:0002181 ... Q9W3W8 34283226
    582517 6xu7:CQ (4.9) BS01 rna ? GO:0002181 ... Q9VS34 34283226
    582518 6xu7:CR (4.9) BS01 rna ? GO:0002181 ... P36241 34283226
    582519 6xu7:CR (4.9) BS02 rna ? GO:0002181 ... P36241 34283226
    582520 6xu7:CS (4.9) BS01 rna ? GO:0002181 ... P41093 34283226
    582521 6xu7:CS (4.9) BS02 rna ? GO:0002181 ... P41093 34283226
    582522 6xu7:CT (4.9) BS01 rna ? GO:0002181 ... Q9V9M7 34283226
    582523 6xu7:CT (4.9) BS02 rna ? GO:0002181 ... Q9V9M7 34283226
    582524 6xu7:CU (4.9) BS01 rna ? GO:0003735 ... E2JE76 34283226
    582525 6xu7:CV (4.9) BS01 rna ? GO:0002181 ... P48159 34283226
    582526 6xu7:CV (4.9) BS02 rna ? GO:0002181 ... P48159 34283226
    582527 6xu7:CW (4.9) BS01 rna ? GO:0003735 ... Q9VJY6 34283226
    582528 6xu7:CX (4.9) BS01 rna ? GO:0003735 ... A1A6X4 34283226
    582529 6xu7:CX (4.9) BS02 rna ? GO:0003735 ... A1A6X4 34283226
    582530 6xu7:CX (4.9) BS03 rna ? GO:0003735 ... A1A6X4 34283226
    582531 6xu7:CY (4.9) BS01 rna ? GO:0003723 ... Q9VVU2 34283226
    582532 6xu7:CY (4.9) BS02 rna ? GO:0003723 ... Q9VVU2 34283226
    582533 6xu7:CZ (4.9) BS01 rna ? GO:0002181 ... Q9VBN5 34283226
    582534 6xu7:Ca (4.9) BS01 rna ? GO:0002181 ... P41092 34283226
    582535 6xu7:Cb (4.9) BS01 rna ? GO:0002181 ... Q24154 34283226
    582536 6xu7:Cc (4.9) BS01 rna ? GO:0002181 ... Q9VJ19 34283226
    582537 6xu7:Cd (4.9) BS01 rna ? GO:0002181 ... Q9V597 34283226
    582538 6xu7:Ce (4.9) BS01 rna ? GO:0000228 ... P04359 34283226
    582539 6xu7:Cf (4.9) BS01 rna ? GO:0002181 ... Q9VNB9 34283226
    582540 6xu7:Cg (4.9) BS01 rna ? GO:0003735 ... Q9VHE5 34283226
    582541 6xu7:Ch (4.9) BS01 rna ? GO:0000463 ... Q9W499 34283226
    582542 6xu7:Ch (4.9) BS02 rna ? GO:0000463 ... Q9W499 34283226
    582543 6xu7:Ci (4.9) BS01 rna ? GO:0000228 ... P49630 34283226
    582544 6xu7:Cj (4.9) BS01 rna ? GO:0002181 ... Q9W1U6 34283226
    582545 6xu7:Cj (4.9) BS02 rna ? GO:0002181 ... Q9W1U6 34283226
    582546 6xu7:Ck (4.9) BS01 rna ? GO:0002181 ... Q9W5N2 34283226
    582547 6xu7:Cl (4.9) BS01 rna ? GO:0002181 ... O16130 34283226
    582548 6xu7:Cl (4.9) BS02 rna ? GO:0002181 ... O16130 34283226
    582549 6xu7:Cm (4.9) BS01 rna ? GO:0003735 ... P18101 34283226
    582550 6xu7:Co (4.9) BS01 rna ? GO:0003735 ... C5WLN8 34283226
    582551 6xu7:Cp (4.9) BS01 rna ? GO:0002181 ... Q9VMU4 34283226
    582552 6xu7:Cr (4.9) BS01 rna ? GO:0002181 ... Q9VZS5 34283226
    582553 6xu7:Cz (4.9) BS01 rna ? GO:0002181 ... Q9VTP4 34283226
    582554 6xu8:AA (3.0) BS01 rna ? GO:0003735 ... P38979 34283226
    582555 6xu8:AB (3.0) BS01 rna ? GO:0003735 ... P55830 34283226
    582556 6xu8:AC (3.0) BS01 rna ? GO:0003723 ... P31009 34283226
    582557 6xu8:AD (3.0) BS01 rna ? GO:0000278 ... Q06559 34283226
    582558 6xu8:AE (3.0) BS01 rna ? GO:0002181 ... P41042 34283226
    582559 6xu8:AF (3.0) BS01 rna ? GO:0003723 ... Q9VFE4 34283226
    582560 6xu8:AG (3.0) BS01 rna ? GO:0002181 ... P29327 34283226
    582561 6xu8:AH (3.0) BS01 rna ? GO:0002181 ... Q9VA91 34283226
    582562 6xu8:AI (3.0) BS01 rna ? GO:0000462 ... Q8MLY8 34283226
    582563 6xu8:AI (3.0) BS02 rna ? GO:0000462 ... Q8MLY8 34283226
    582564 6xu8:AJ (3.0) BS01 rna ? GO:0000228 ... P55935 34283226
    582565 6xu8:AK (3.0) BS01 rna ? N/A Q9VWG3 34283226
    582566 6xu8:AL (3.0) BS01 rna ? GO:0000228 ... Q0E9B6 34283226
    582567 6xu8:AM (3.0) BS01 rna ? N/A P80455 34283226
    582568 6xu8:AN (3.0) BS01 rna ? GO:0000228 ... Q03334 34283226
    582569 6xu8:AO (3.0) BS01 rna ? GO:0003735 ... C0HKA0 34283226
    582570 6xu8:AP (3.0) BS01 rna ? GO:0003723 ... Q7JZW2 34283226
    582571 6xu8:AQ (3.0) BS01 rna ? GO:0000462 ... Q9W237 34283226
    582572 6xu8:AR (3.0) BS01 rna ? GO:0002181 ... P17704 34283226
    582573 6xu8:AS (3.0) BS01 rna ? GO:0003723 ... P41094 34283226
    582574 6xu8:AT (3.0) BS01 rna ? GO:0003735 ... P39018 34283226
    582575 6xu8:AU (3.0) BS01 rna ? GO:0003723 ... P55828 34283226
    582576 6xu8:AV (3.0) BS01 rna ? GO:0000447 ... O76927 34283226
    582577 6xu8:AW (3.0) BS01 rna ? GO:0002181 ... P48149 34283226
    582578 6xu8:AX (3.0) BS01 rna ? GO:0002181 ... Q8T3U2 34283226
    582579 6xu8:AY (3.0) BS01 rna ? GO:0002181 ... Q9W229 34283226
    582580 6xu8:AZ (3.0) BS01 rna ? N/A P48588 34283226
    582581 6xu8:Aa (3.0) BS01 rna ? GO:0002181 ... P13008 34283226
    582582 6xu8:Ab (3.0) BS01 rna ? GO:0000028 ... Q9VBU9 34283226
    582583 6xu8:Ac (3.0) BS01 rna ? GO:0000028 ... Q9W334 34283226
    582584 6xu8:Ad (3.0) BS01 rna ? GO:0002181 ... Q9VH69 34283226
    582585 6xu8:Ae (3.0) BS01 rna ? GO:0003735 ... Q7JYY0 34283226
    582586 6xu8:Af (3.0) BS01 rna ? GO:0003735 ... P15357 34283226
    582587 6xu8:Ag (3.0) BS01 rna ? GO:0000423 ... O18640 34283226
    582588 6xu8:CA (3.0) BS01 rna ? GO:0000228 ... Q9V3G1 34283226
    582589 6xu8:CA (3.0) BS02 rna ? GO:0000228 ... Q9V3G1 34283226
    582590 6xu8:CB (3.0) BS01 rna ? GO:0002181 ... O16797 34283226
    582591 6xu8:CC (3.0) BS01 rna ? GO:0002181 ... P09180 34283226
    582592 6xu8:CC (3.0) BS02 rna ? GO:0002181 ... P09180 34283226
    582593 6xu8:CD (3.0) BS01 rna ? GO:0000027 ... Q9W5R8 34283226
    582594 6xu8:CD (3.0) BS02 rna ? GO:0000027 ... Q9W5R8 34283226
    582595 6xu8:CE (3.0) BS01 rna ? GO:0002181 ... Q9V9W2 34283226
    582596 6xu8:CF (3.0) BS01 rna ? GO:0000463 ... P32100 34283226
    582597 6xu8:CF (3.0) BS02 rna ? GO:0000463 ... P32100 34283226
    582598 6xu8:CG (3.0) BS01 rna ? GO:0003723 ... P46223 34283226
    582599 6xu8:CG (3.0) BS02 rna ? GO:0003723 ... P46223 34283226
    582600 6xu8:CH (3.0) BS01 rna ? GO:0002181 ... P50882 34283226

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).