SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    583001 6xyr:A (2.079) BS04 CA 3.2.1.17 GO:0000086 ... P00720
    P0DP23
    34587504
    583002 6xyr:A (2.079) BS05 CA 3.2.1.17 GO:0000086 ... P00720
    P0DP23
    34587504
    583003 6xys:A (2.46) BS01 BMA 3.1.1.7 GO:0001507 ... P07140 32155891
    583004 6xyt:A (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    583005 6xyt:A (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    583006 6xyt:B (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    583007 6xyt:B (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    583008 6xyt:C (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    583009 6xyt:C (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    583010 6xyt:D (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    583011 6xyt:D (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    583012 6xyt:E (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    583013 6xyt:E (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    583014 6xyu:A (2.51) BS01 I40 3.1.1.7 GO:0001507 ... P07140 32155891
    583015 6xyv:A (-1.00) BS01 SF4 ? GO:0009055 ... A1EBT4 33124176
    583016 6xyw:AB (3.86) BS01 rna ? GO:0003735 ... Q944L5 32251374
    583017 6xyw:AC (3.86) BS01 rna ? GO:0003674 ... Q9SQT5 32251374
    583018 6xyw:AD (3.86) BS01 rna ? GO:0003735 ... Q8LAA7 32251374
    583019 6xyw:AE (3.86) BS01 rna ? GO:0003735 ... Q8W464 32251374
    583020 6xyw:AF (3.86) BS01 rna ? GO:0005507 ... Q9M0V5 32251374
    583021 6xyw:AG (3.86) BS01 rna ? GO:0003735 ... Q9LUJ9 32251374
    583022 6xyw:AH (3.86) BS01 rna ? GO:0003735 ... F4J9E4 32251374
    583023 6xyw:AJ (3.86) BS01 rna ? GO:0005739 ... Q940G3 32251374
    583024 6xyw:AK (3.86) BS01 rna ? GO:0003674 ... O65448 32251374
    583025 6xyw:AL (3.86) BS01 rna ? GO:0008150 ... Q94F28 32251374
    583026 6xyw:AL (3.86) BS02 rna ? GO:0008150 ... Q94F28 32251374
    583027 6xyw:AM (3.86) BS01 rna ? GO:0003729 ... Q9C9B5 32251374
    583028 6xyw:AN (3.86) BS01 rna ? GO:0005739 ... Q9SD44 32251374
    583029 6xyw:AO (3.86) BS01 rna ? GO:0003729 ... O22714 32251374
    583030 6xyw:AP (3.86) BS01 rna N/A N/A N/A 32251374
    583031 6xyw:AQ (3.86) BS01 rna ? GO:0003723 ... Q9FME4 32251374
    583032 6xyw:Aa (3.86) BS01 rna ? GO:0003729 ... P93311 32251374
    583033 6xyw:Ab (3.86) BS01 rna ? GO:0003735 ... Q8VZU4 32251374
    583034 6xyw:Ac (3.86) BS01 rna ? GO:0003729 ... Q9LRN8 32251374
    583035 6xyw:Ad (3.86) BS01 rna ? GO:0003729 ... Q8VY61 32251374
    583036 6xyw:Ae (3.86) BS01 rna ? GO:0003723 ... P42793 32251374
    583037 6xyw:Ae (3.86) BS02 rna ? GO:0003723 ... P42793 32251374
    583038 6xyw:Af (3.86) BS01 rna ? GO:0003735 ... Q9ZPX2 32251374
    583039 6xyw:Ag (3.86) BS01 rna ? GO:0003735 ... Q9LVU5 32251374
    583040 6xyw:Ah (3.86) BS01 rna ? GO:0005840 ... Q9LHH1 32251374
    583041 6xyw:Ai (3.86) BS01 rna ? GO:0003735 ... Q9SVW7 32251374
    583042 6xyw:Aj (3.86) BS01 rna ? GO:0003735 ... Q7XA68 32251374
    583043 6xyw:Ak (3.86) BS01 rna ? GO:0003735 ... Q93Z17 32251374
    583044 6xyw:Ak (3.86) BS02 rna ? GO:0003735 ... Q93Z17 32251374
    583045 6xyw:Al (3.86) BS01 rna ? GO:0003729 ... Q9FLF3 32251374
    583046 6xyw:Am (3.86) BS01 rna ? GO:0003735 ... Q95747 32251374
    583047 6xyw:An (3.86) BS01 rna ? GO:0003735 ... Q8LD39 32251374
    583048 6xyw:Ao (3.86) BS01 rna ? GO:0003735 ... Q8LDK5 32251374
    583049 6xyw:Ao (3.86) BS02 rna ? GO:0003735 ... Q8LDK5 32251374
    583050 6xyw:Ap (3.86) BS01 rna ? GO:0003735 ... O48691 32251374
    583051 6xyw:Aq (3.86) BS01 rna ? GO:0003735 ... Q8LCN1 32251374
    583052 6xyw:Ar (3.86) BS01 rna ? GO:0000741 ... Q8L9A0 32251374
    583053 6xyw:As (3.86) BS01 rna ? GO:0003735 ... Q56W16 32251374
    583054 6xyw:At (3.86) BS01 rna ? GO:0003729 ... Q9SMR5 32251374
    583055 6xyw:Au (3.86) BS01 rna ? GO:0003723 ... Q9LT09 32251374
    583056 6xyw:Av (3.86) BS01 rna ? GO:0003729 ... Q9FKZ4 32251374
    583057 6xyw:Av (3.86) BS02 rna ? GO:0003729 ... Q9FKZ4 32251374
    583058 6xyw:Aw (3.86) BS01 rna ? GO:0003735 ... Q9ZVX0 32251374
    583059 6xyw:Ax (3.86) BS01 rna ? GO:0003729 ... Q9SV23 32251374
    583060 6xyw:Ay (3.86) BS01 rna ? GO:0003735 ... Q94JQ7 32251374
    583061 6xyw:Az (3.86) BS01 rna ? GO:0003735 ... Q8L908 32251374
    583062 6xyw:Az (3.86) BS02 rna ? GO:0003735 ... Q8L908 32251374
    583063 6xyw:BC (3.86) BS01 rna ? GO:0003674 ... Q6IDB8 32251374
    583064 6xyw:BD (3.86) BS01 rna ? GO:0005739 ... Q9LVA9 32251374
    583065 6xyw:BG (3.86) BS01 rna ? GO:0003729 ... P0C896 32251374
    583066 6xyw:BI (3.86) BS01 rna N/A GO:0050825 ... N/A 32251374
    583067 6xyw:BJ (3.86) BS01 rna N/A GO:0050825 ... N/A 32251374
    583068 6xyw:BK (3.86) BS01 rna N/A GO:0050825 ... N/A 32251374
    583069 6xyw:Ba (3.86) BS01 rna ? GO:0003735 ... Q9GCB9 32251374
    583070 6xyw:Bb (3.86) BS01 rna ? GO:0003723 ... Q95749 32251374
    583071 6xyw:Bc (3.86) BS01 rna ? GO:0003723 ... Q31708 32251374
    583072 6xyw:Bd (3.86) BS01 rna ? GO:0003723 ... Q6GKU7 32251374
    583073 6xyw:Be (3.86) BS01 rna ? GO:0003735 ... Q9LSA1 32251374
    583074 6xyw:Bf (3.86) BS01 rna ? GO:0003729 ... P92557 32251374
    583075 6xyw:Bg (3.86) BS01 rna ? GO:0000325 ... Q9M0E0 32251374
    583076 6xyw:Bh (3.86) BS01 rna ? GO:0003735 ... Q8L6Z4 32251374
    583077 6xyw:Bi (3.86) BS01 rna ? GO:0003729 ... P42797 32251374
    583078 6xyw:Bj (3.86) BS01 rna ? GO:0000741 ... Q8VZT8 32251374
    583079 6xyw:Bk (3.86) BS01 rna ? GO:0003735 ... P92532 32251374
    583080 6xyw:Bl (3.86) BS01 rna ? GO:0003676 ... Q9CA19 32251374
    583081 6xyw:Bm (3.86) BS01 rna ? GO:0003735 ... Q9SMX4 32251374
    583082 6xyw:Bn (3.86) BS01 rna ? GO:0003729 ... Q9LMQ3 32251374
    583083 6xyw:Bn (3.86) BS02 rna ? GO:0003729 ... Q9LMQ3 32251374
    583084 6xyw:Bo (3.86) BS01 rna ? GO:0003735 ... Q9LTS6 32251374
    583085 6xyw:Bp (3.86) BS01 rna ? GO:0003735 ... Q9XIA6 32251374
    583086 6xyw:Bq (3.86) BS01 rna ? GO:0003729 ... Q9LML3 32251374
    583087 6xyw:Br (3.86) BS01 rna ? GO:0003676 ... P39697 32251374
    583088 6xyw:Bs (3.86) BS01 rna ? GO:0003735 ... F4JCI2 32251374
    583089 6xyw:Bu (3.86) BS01 rna ? GO:0005575 ... F4HPB7 32251374
    583090 6xyw:Bv (3.86) BS01 rna ? GO:0005515 ... Q945P2 32251374
    583091 6xyw:Bw (3.86) BS01 peptide ? GO:0005739 ... Q8W4K2 32251374
    583092 6xyw:Bw (3.86) BS02 rna ? GO:0005739 ... Q8W4K2 32251374
    583093 6xyw:Bx (3.86) BS01 rna ? GO:0005739 ... Q8GXH5 32251374
    583094 6xyw:By (3.86) BS01 rna ? GO:0003735 ... Q9FHC3 32251374
    583095 6xyw:Bz (3.86) BS01 rna ? GO:0003735 ... Q9LJQ6 32251374
    583096 6xyx:A (1.44) BS01 peptide ? N/A P41182 33708392
    583097 6xyx:A (1.44) BS02 peptide ? N/A P41182 33708392
    583098 6xyx:B (1.44) BS01 peptide ? N/A P41182 33708392
    583099 6xyx:B (1.44) BS02 peptide ? N/A P41182 33708392
    583100 6xyy:A (2.7) BS01 MAN 3.1.1.7 GO:0001507 ... P07140 32155891
    583101 6xyy:A (2.7) BS02 760 3.1.1.7 GO:0001507 ... P07140 32155891
    583102 6xz0:A (2.8) BS01 SCM 2.7.7.47 GO:0005524 ... Q07448 32253216
    583103 6xz1:A (2.3) BS01 AYE 2.3.2.26 GO:0004842 ... Q5H924 34403242
    583104 6xz2:B (1.65) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 34045551
    583105 6xz2:C (1.65) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 34045551
    583106 6xz7:C (2.1) BS01 rna ? GO:0000027 ... P60422 32144191
    583107 6xz7:D (2.1) BS01 rna ? GO:0000027 ... P60438 32144191
    583108 6xz7:E (2.1) BS01 rna ? GO:0001070 ... P60723 32144191
    583109 6xz7:F (2.1) BS01 rna ? GO:0000027 ... P62399 32144191
    583110 6xz7:F (2.1) BS02 rna ? GO:0000027 ... P62399 32144191
    583111 6xz7:F (2.1) BS03 rna ? GO:0000027 ... P62399 32144191
    583112 6xz7:G (2.1) BS01 rna ? GO:0000027 ... P0AG55 32144191
    583113 6xz7:H (2.1) BS01 rna ? GO:0003735 ... P0A7J3 32144191
    583114 6xz7:I (2.1) BS01 rna ? GO:0000027 ... P0A7J7 32144191
    583115 6xz7:J (2.1) BS01 rna ? GO:0002181 ... P0AA10 32144191
    583116 6xz7:K (2.1) BS01 rna ? GO:0002181 ... P0ADY3 32144191
    583117 6xz7:L (2.1) BS01 rna ? GO:0002181 ... P02413 32144191
    583118 6xz7:M (2.1) BS01 rna ? GO:0000027 ... P0ADY7 32144191
    583119 6xz7:M (2.1) BS02 rna ? GO:0000027 ... P0ADY7 32144191
    583120 6xz7:M (2.1) BS03 rna ? GO:0000027 ... P0ADY7 32144191
    583121 6xz7:N (2.1) BS01 rna ? GO:0000027 ... P0AG44 32144191
    583122 6xz7:O (2.1) BS01 rna ? GO:0002181 ... P0C018 32144191
    583123 6xz7:O (2.1) BS02 rna ? GO:0002181 ... P0C018 32144191
    583124 6xz7:P (2.1) BS01 rna ? GO:0000027 ... P0A7K6 32144191
    583125 6xz7:Q (2.1) BS01 rna ? GO:0000027 ... P0A7L3 32144191
    583126 6xz7:R (2.1) BS01 rna ? GO:0002181 ... P0AG48 32144191
    583127 6xz7:S (2.1) BS01 rna ? GO:0002181 ... P61175 32144191
    583128 6xz7:T (2.1) BS01 rna ? GO:0000027 ... P0ADZ0 32144191
    583129 6xz7:U (2.1) BS01 rna ? GO:0000027 ... P60624 32144191
    583130 6xz7:V (2.1) BS01 rna ? GO:0000027 ... P68919 32144191
    583131 6xz7:W (2.1) BS01 rna ? GO:0003735 ... P0A7L8 32144191
    583132 6xz7:W (2.1) BS02 rna ? GO:0003735 ... P0A7L8 32144191
    583133 6xz7:X (2.1) BS01 rna ? GO:0000027 ... P0A7M2 32144191
    583134 6xz7:Y (2.1) BS01 rna ? GO:0000027 ... P0A7M6 32144191
    583135 6xz7:Z (2.1) BS01 rna ? GO:0000027 ... P0AG51 32144191
    583136 6xz7:Z (2.1) BS02 rna ? GO:0000027 ... P0AG51 32144191
    583137 6xz7:a (2.1) BS01 rna ? GO:0000027 ... P0A7N4 32144191
    583138 6xz7:b (2.1) BS01 rna ? GO:0000027 ... P0A7N9 32144191
    583139 6xz7:c (2.1) BS01 rna ? GO:0002181 ... P0A7P5 32144191
    583140 6xz7:d (2.1) BS01 rna ? GO:0002181 ... P0A7Q1 32144191
    583141 6xz7:e (2.1) BS01 rna ? GO:0002181 ... P0A7Q6 32144191
    583142 6xz8:A (3.0) BS01 HEC 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624
    583143 6xz8:A (3.0) BS02 O4T 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624 BindingDB: IC50=8.0nM
    583144 6xz8:B (3.0) BS01 HEC 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624
    583145 6xz8:B (3.0) BS02 O4T 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624 BindingDB: IC50=8.0nM
    583146 6xz8:C (3.0) BS01 HEC 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624
    583147 6xz8:C (3.0) BS02 O4T 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624 BindingDB: IC50=8.0nM
    583148 6xz9:A (2.77) BS01 HEC 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624
    583149 6xz9:A (2.77) BS02 O4W 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624 BindingDB: IC50=0.500000nM
    583150 6xz9:B (2.77) BS01 HEC 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624
    583151 6xz9:B (2.77) BS02 O4W 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624 BindingDB: IC50=0.500000nM
    583152 6xz9:C (2.77) BS01 HEC 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624
    583153 6xz9:C (2.77) BS02 O4W 1.14.15.4
    1.14.15.5
    GO:0002017 ... P19099 32530624 BindingDB: IC50=0.500000nM
    583154 6xza:B1 (2.66) BS01 rna ? GO:0000028 ... P0A7V0 32144191
    583155 6xza:C1 (2.66) BS01 rna ? GO:0003676 ... P0A7V3 32144191
    583156 6xza:C2 (2.66) BS01 rna ? GO:0000027 ... P60422 32144191
    583157 6xza:D1 (2.66) BS01 rna ? GO:0000028 ... P0A7V8 32144191
    583158 6xza:D2 (2.66) BS01 rna ? GO:0000027 ... P60438 32144191
    583159 6xza:E1 (2.66) BS01 rna ? GO:0000028 ... P0A7W1 32144191
    583160 6xza:E2 (2.66) BS01 rna ? GO:0001070 ... P60723 32144191
    583161 6xza:F1 (2.66) BS01 rna ? GO:0003735 ... P02358 32144191
    583162 6xza:F2 (2.66) BS01 rna ? GO:0000027 ... P62399 32144191
    583163 6xza:F2 (2.66) BS02 rna ? GO:0000027 ... P62399 32144191
    583164 6xza:F2 (2.66) BS03 rna ? GO:0000027 ... P62399 32144191
    583165 6xza:G1 (2.66) BS01 rna ? GO:0003723 ... P02359 32144191
    583166 6xza:G2 (2.66) BS01 rna ? GO:0000027 ... P0AG55 32144191
    583167 6xza:H1 (2.66) BS01 rna ? GO:0000028 ... P0A7W7 32144191
    583168 6xza:H2 (2.66) BS01 rna ? GO:0003735 ... P0A7J3 32144191
    583169 6xza:I1 (2.66) BS01 rna ? GO:0000049 ... P0A7X3 32144191
    583170 6xza:I1 (2.66) BS02 rna ? GO:0000049 ... P0A7X3 32144191
    583171 6xza:I2 (2.66) BS01 rna ? GO:0000027 ... P0A7J7 32144191
    583172 6xza:J1 (2.66) BS01 rna ? GO:0000049 ... P0A7R5 32144191
    583173 6xza:J2 (2.66) BS01 rna ? GO:0002181 ... P0AA10 32144191
    583174 6xza:K1 (2.66) BS01 rna ? GO:0002181 ... P0A7R9 32144191
    583175 6xza:K2 (2.66) BS01 rna ? GO:0002181 ... P0ADY3 32144191
    583176 6xza:K2 (2.66) BS02 rna ? GO:0002181 ... P0ADY3 32144191
    583177 6xza:L1 (2.66) BS01 rna ? GO:0000049 ... P0A7S3 32144191
    583178 6xza:L2 (2.66) BS01 rna ? GO:0002181 ... P02413 32144191
    583179 6xza:M1 (2.66) BS01 rna ? GO:0000049 ... P0A7S9 32144191
    583180 6xza:M2 (2.66) BS01 rna ? GO:0000027 ... P0ADY7 32144191
    583181 6xza:M2 (2.66) BS02 rna ? GO:0000027 ... P0ADY7 32144191
    583182 6xza:N1 (2.66) BS01 rna ? GO:0000028 ... P0AG59 32144191
    583183 6xza:N2 (2.66) BS01 rna ? GO:0000027 ... P0AG44 32144191
    583184 6xza:O1 (2.66) BS01 rna ? GO:0000028 ... P0ADZ4 32144191
    583185 6xza:O2 (2.66) BS01 rna ? GO:0002181 ... P0C018 32144191
    583186 6xza:O2 (2.66) BS02 rna ? GO:0002181 ... P0C018 32144191
    583187 6xza:P1 (2.66) BS01 rna ? GO:0000028 ... P0A7T3 32144191
    583188 6xza:P2 (2.66) BS01 rna ? GO:0000027 ... P0A7K6 32144191
    583189 6xza:P2 (2.66) BS02 rna ? GO:0000027 ... P0A7K6 32144191
    583190 6xza:Q1 (2.66) BS01 rna ? GO:0000028 ... P0AG63 32144191
    583191 6xza:Q2 (2.66) BS01 rna ? GO:0000027 ... P0A7L3 32144191
    583192 6xza:R1 (2.66) BS01 rna ? GO:0003735 ... P0A7T7 32144191
    583193 6xza:R2 (2.66) BS01 rna ? GO:0002181 ... P0AG48 32144191
    583194 6xza:S1 (2.66) BS01 rna ? GO:0003723 ... P0A7U3 32144191
    583195 6xza:S2 (2.66) BS01 rna ? GO:0002181 ... P61175 32144191
    583196 6xza:T1 (2.66) BS01 rna ? GO:0000028 ... P0A7U7 32144191
    583197 6xza:T2 (2.66) BS01 rna ? GO:0000027 ... P0ADZ0 32144191
    583198 6xza:U1 (2.66) BS01 rna ? GO:0003735 ... P68679 32144191
    583199 6xza:U2 (2.66) BS01 rna ? GO:0000027 ... P60624 32144191
    583200 6xza:V2 (2.66) BS01 rna ? GO:0000027 ... P68919 32144191

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).