SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    583401 6y0g:Lc (3.2) BS01 rna ? GO:0002181 ... P62888 32268098
    583402 6y0g:Ld (3.2) BS01 rna ? GO:0002181 ... P62899 32268098
    583403 6y0g:Le (3.2) BS01 rna ? GO:0002181 ... P62910 32268098
    583404 6y0g:Lf (3.2) BS01 rna ? GO:0000049 ... P18077 32268098
    583405 6y0g:Lg (3.2) BS01 rna ? GO:0002181 ... P49207 32268098
    583406 6y0g:Lg (3.2) BS02 ZN ? GO:0002181 ... P49207 32268098
    583407 6y0g:Lh (3.2) BS01 rna ? GO:0000463 ... P42766 32268098
    583408 6y0g:Lh (3.2) BS02 rna ? GO:0000463 ... P42766 32268098
    583409 6y0g:Li (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 32268098
    583410 6y0g:Lj (3.2) BS01 rna ? GO:0002181 ... P61927 32268098
    583411 6y0g:Lj (3.2) BS02 rna ? GO:0002181 ... P61927 32268098
    583412 6y0g:Lj (3.2) BS03 ZN ? GO:0002181 ... P61927 32268098
    583413 6y0g:Lk (3.2) BS01 rna ? GO:0001501 ... P63173 32268098
    583414 6y0g:Ll (3.2) BS01 rna ? GO:0002181 ... P62891 32268098
    583415 6y0g:Ll (3.2) BS02 rna ? GO:0002181 ... P62891 32268098
    583416 6y0g:Lm (3.2) BS01 rna ? GO:0002181 ... P62987 32268098
    583417 6y0g:Lm (3.2) BS02 ZN ? GO:0002181 ... P62987 32268098
    583418 6y0g:Lo (3.2) BS01 rna ? GO:0002181 ... P83881 32268098
    583419 6y0g:Lo (3.2) BS02 rna ? GO:0002181 ... P83881 32268098
    583420 6y0g:Lo (3.2) BS03 ZN ? GO:0002181 ... P83881 32268098
    583421 6y0g:Lp (3.2) BS01 rna ? GO:0002181 ... P61513 32268098
    583422 6y0g:Lp (3.2) BS02 ZN ? GO:0002181 ... P61513 32268098
    583423 6y0g:Lr (3.2) BS01 rna ? GO:0002181 ... P46779 32268098
    583424 6y0g:SA (3.2) BS01 rna ? GO:0000028 ... P08865 32268098
    583425 6y0g:SB (3.2) BS01 rna ? GO:0002181 ... P61247 32268098
    583426 6y0g:SC (3.2) BS01 rna ? GO:0002181 ... P15880 32268098
    583427 6y0g:SC (3.2) BS02 rna ? GO:0002181 ... P15880 32268098
    583428 6y0g:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32268098
    583429 6y0g:SD (3.2) BS02 rna 4.2.99.18 GO:0000977 ... P23396 32268098
    583430 6y0g:SE (3.2) BS01 rna ? GO:0002181 ... P62701 32268098
    583431 6y0g:SF (3.2) BS01 rna ? GO:0000028 ... P46782 32268098
    583432 6y0g:SG (3.2) BS01 rna ? GO:0000082 ... P62753 32268098
    583433 6y0g:SH (3.2) BS01 rna ? GO:0001843 ... P62081 32268098
    583434 6y0g:SI (3.2) BS01 rna ? GO:0000462 ... P62241 32268098
    583435 6y0g:SI (3.2) BS02 rna ? GO:0000462 ... P62241 32268098
    583436 6y0g:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 32268098
    583437 6y0g:SK (3.2) BS01 rna ? GO:0002181 ... P46783 32268098
    583438 6y0g:SL (3.2) BS01 rna ? GO:0002181 ... P62280 32268098
    583439 6y0g:SM (3.2) BS01 rna ? GO:0002181 ... P25398 32268098
    583440 6y0g:SN (3.2) BS01 rna ? GO:0002181 ... P62277 32268098
    583441 6y0g:SN (3.2) BS02 rna ? GO:0002181 ... P62277 32268098
    583442 6y0g:SO (3.2) BS01 rna ? GO:0000028 ... P62263 32268098
    583443 6y0g:SP (3.2) BS01 rna ? GO:0000028 ... P62841 32268098
    583444 6y0g:SP (3.2) BS02 rna ? GO:0000028 ... P62841 32268098
    583445 6y0g:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 32268098
    583446 6y0g:SR (3.2) BS01 rna ? GO:0002181 ... P08708 32268098
    583447 6y0g:SS (3.2) BS01 rna ? GO:0002181 ... P62269 32268098
    583448 6y0g:SS (3.2) BS02 rna ? GO:0002181 ... P62269 32268098
    583449 6y0g:SS (3.2) BS03 rna ? GO:0002181 ... P62269 32268098
    583450 6y0g:ST (3.2) BS01 rna ? GO:0000028 ... P39019 32268098
    583451 6y0g:SU (3.2) BS01 rna ? GO:0002181 ... P60866 32268098
    583452 6y0g:SW (3.2) BS01 rna ? GO:0002181 ... P62244 32268098
    583453 6y0g:SX (3.2) BS01 rna ? GO:0002181 ... P62266 32268098
    583454 6y0g:SY (3.2) BS01 rna ? GO:0002181 ... P62847 32268098
    583455 6y0g:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 32268098
    583456 6y0g:SZ (3.2) BS02 rna ? GO:0002181 ... P62851 32268098
    583457 6y0g:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 32268098
    583458 6y0g:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 32268098
    583459 6y0g:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 32268098
    583460 6y0g:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 32268098
    583461 6y0g:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 32268098
    583462 6y0g:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 32268098
    583463 6y0g:Se (3.2) BS01 rna ? GO:0003735 ... P62861 32268098
    583464 6y0g:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 32268098
    583465 6y0g:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 32268098
    583466 6y0j:A (2.7) BS01 HEC ? GO:0005515 ... P00044 N/A
    583467 6y0j:A (2.7) BS02 EVB ? GO:0005515 ... P00044 N/A
    583468 6y0j:B (2.7) BS01 HEC ? GO:0005515 ... P00044 N/A
    583469 6y0j:B (2.7) BS02 7AZ ? GO:0005515 ... P00044 N/A
    583470 6y0j:B (2.7) BS03 EVB ? GO:0005515 ... P00044 N/A
    583471 6y0j:C (2.7) BS01 HEC ? GO:0005515 ... P00044 N/A
    583472 6y0j:C (2.7) BS02 7AZ ? GO:0005515 ... P00044 N/A
    583473 6y0j:C (2.7) BS03 EVB ? GO:0005515 ... P00044 N/A
    583474 6y0j:D (2.7) BS01 7AZ ? GO:0005515 ... P00044 N/A
    583475 6y0j:D (2.7) BS02 HEC ? GO:0005515 ... P00044 N/A
    583476 6y0j:D (2.7) BS03 7AZ ? GO:0005515 ... P00044 N/A
    583477 6y0k:AAA (1.7) BS01 MSS ? GO:0006790 ... Q5SIP4 32716419
    583478 6y0k:AAA (1.7) BS02 PO4 ? GO:0006790 ... Q5SIP4 32716419
    583479 6y0k:AAA (1.7) BS03 PO4 ? GO:0006790 ... Q5SIP4 32716419
    583480 6y0k:AAA (1.7) BS04 PO4 ? GO:0006790 ... Q5SIP4 32716419
    583481 6y0k:AAA (1.7) BS05 PO4 ? GO:0006790 ... Q5SIP4 32716419
    583482 6y0n:A (1.86) BS01 ARG 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    583483 6y0n:A (1.86) BS02 AKG 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    583484 6y0n:A (1.86) BS03 FE 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    583485 6y0o:A (2.2) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 32939282
    583486 6y0o:A (2.2) BS02 FE 1.21.3.1 GO:0005506 ... P05326 32939282
    583487 6y0p:A (1.98) BS01 IP1 1.21.3.1 GO:0005506 ... P05326 34417180
    583488 6y0p:A (1.98) BS02 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    583489 6y0q:A (1.75) BS01 AKG 1.14.11.33 GO:0005515 ... P05050 32939282
    583490 6y0q:A (1.75) BS02 FE 1.14.11.33 GO:0005515 ... P05050 32939282
    583491 6y0q:A (1.75) BS03 O5W 1.14.11.33 GO:0005515 ... P05050 32939282
    583492 6y0r:AAA (1.611) BS01 FAD 1.1.3.- GO:0016491 ... I1S2K2 32491191
    583493 6y0s:AAA (1.44) BS01 MG ? GO:0000166 ... Q84EX5 32302461
    583494 6y0s:AAA (1.44) BS02 MG ? GO:0000166 ... Q84EX5 32302461
    583495 6y0s:BBB (1.44) BS01 MG ? GO:0000166 ... Q84EX5 32302461
    583496 6y0s:BBB (1.44) BS02 MG ? GO:0000166 ... Q84EX5 32302461
    583497 6y0u:A (1.489) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    583498 6y0u:A (1.489) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    583499 6y0u:A (1.489) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    583500 6y0u:B (1.489) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    583501 6y0u:B (1.489) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    583502 6y0u:B (1.489) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    583503 6y0u:C (1.489) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    583504 6y0u:C (1.489) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    583505 6y0u:C (1.489) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    583506 6y0u:D (1.489) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    583507 6y0u:D (1.489) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    583508 6y0u:D (1.489) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    583509 6y0v:A (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    583510 6y0v:A (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    583511 6y0v:A (1.98) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    583512 6y0v:B (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    583513 6y0v:B (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    583514 6y0v:B (1.98) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    583515 6y0v:C (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    583516 6y0v:C (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    583517 6y0v:C (1.98) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    583518 6y0v:D (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    583519 6y0v:D (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    583520 6y0v:D (1.98) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    583521 6y0w:A (2.06) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    583522 6y0w:A (2.06) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    583523 6y0w:A (2.06) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    583524 6y0w:B (2.06) BS01 peptide ? GO:0030246 ... Q9HYN5 N/A
    583525 6y0w:B (2.06) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    583526 6y0w:B (2.06) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    583527 6y0w:B (2.06) BS04 ZDC ? GO:0030246 ... Q9HYN5 N/A
    583528 6y0x:A (2.425) BS01 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583529 6y0x:A (2.425) BS02 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583530 6y0x:A (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583531 6y0x:B (2.425) BS01 peptide ? GO:0030246 ... A0A0S4TLR1 N/A
    583532 6y0x:B (2.425) BS02 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583533 6y0x:B (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583534 6y0x:B (2.425) BS04 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583535 6y0x:C (2.425) BS01 peptide ? GO:0030246 ... A0A0S4TLR1 N/A
    583536 6y0x:C (2.425) BS02 peptide ? GO:0030246 ... A0A0S4TLR1 N/A
    583537 6y0x:C (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583538 6y0x:C (2.425) BS04 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583539 6y0x:D (2.425) BS01 peptide ? GO:0030246 ... A0A0S4TLR1 N/A
    583540 6y0x:D (2.425) BS02 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583541 6y0x:D (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583542 6y0x:E (2.425) BS01 peptide ? GO:0030246 ... A0A0S4TLR1 N/A
    583543 6y0x:E (2.425) BS02 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583544 6y0x:E (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583545 6y0x:E (2.425) BS04 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583546 6y0x:F (2.425) BS01 peptide ? GO:0030246 ... A0A0S4TLR1 N/A
    583547 6y0x:F (2.425) BS02 peptide ? GO:0030246 ... A0A0S4TLR1 N/A
    583548 6y0x:F (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583549 6y0x:F (2.425) BS04 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    583550 6y0z:A (1.21) BS01 MG ? GO:0000166 ... Q84EX5 N/A
    583551 6y10:A (1.22) BS01 MG ? GO:0000166 ... Q84EX5 N/A
    583552 6y11:1 (3.109) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    583553 6y11:1 (3.109) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 32811817
    583554 6y11:2 (3.109) BS01 FES 7.1.1.- GO:0003954 ... Q56221 32811817
    583555 6y11:3 (3.109) BS01 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    583556 6y11:3 (3.109) BS02 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    583557 6y11:3 (3.109) BS03 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    583558 6y11:3 (3.109) BS04 FES 7.1.1.- GO:0005886 ... Q56223 32811817
    583559 6y11:6 (3.109) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    583560 6y11:9 (3.109) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    583561 6y11:9 (3.109) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    583562 6y11:B (3.109) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    583563 6y11:B (3.109) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 32811817
    583564 6y11:C (3.109) BS01 FES 7.1.1.- GO:0003954 ... Q56221 32811817
    583565 6y11:D (3.109) BS01 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    583566 6y11:D (3.109) BS02 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    583567 6y11:D (3.109) BS03 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    583568 6y11:D (3.109) BS04 FES 7.1.1.- GO:0005886 ... Q56223 32811817
    583569 6y11:G (3.109) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    583570 6y11:O (3.109) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    583571 6y11:O (3.109) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    583572 6y12:A (1.7) BS01 FE 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    583573 6y12:A (1.7) BS02 ZZU 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    583574 6y18:A (1.3) BS01 peptide ? GO:0000122 ... P31947 33196173
    583575 6y18:A (1.3) BS02 O68 ? GO:0000122 ... P31947 33196173
    583576 6y1d:A (1.38) BS01 peptide ? GO:0000122 ... P31947 33196173
    583577 6y1d:A (1.38) BS02 MG ? GO:0000122 ... P31947 33196173
    583578 6y1e:A (1.402) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    583579 6y1e:A (1.402) BS02 O7Z 2.5.1.18 GO:0000302 ... P09211 N/A
    583580 6y1e:B (1.402) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    583581 6y1e:B (1.402) BS02 O7Z 2.5.1.18 GO:0000302 ... P09211 N/A
    583582 6y1e:C (1.402) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    583583 6y1e:D (1.402) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    583584 6y1i:A (3.0) BS01 ADP ? GO:0003777 ... P52732 N/A
    583585 6y1i:B (3.0) BS01 ADP ? GO:0003777 ... P52732 N/A
    583586 6y1i:C (3.0) BS01 ADP ? GO:0003777 ... P52732 N/A
    583587 6y1j:A (1.127) BS01 peptide ? GO:0000122 ... P31947 32201828
    583588 6y1j:A (1.127) BS02 CA ? GO:0000122 ... P31947 32201828
    583589 6y1j:A (1.127) BS03 CA ? GO:0000122 ... P31947 32201828
    583590 6y1n:H (2.2) BS01 XOP N/A N/A N/A 32859757
    583591 6y1n:L (2.2) BS01 XOP N/A N/A N/A 32859757
    583592 6y1p:A (0.94) BS01 4G7 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    583593 6y1p:A (0.94) BS02 4G7 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    583594 6y1p:A (0.94) BS03 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    583595 6y1t:A (1.5) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 34337604
    583596 6y1u:A (1.68) BS01 GDP ? GO:0003924 ... P9WN95 34023403
    583597 6y1u:B (1.68) BS01 4HC ? GO:0003924 ... P9WN95 34023403
    583598 6y1u:B (1.68) BS02 4HC ? GO:0003924 ... P9WN95 34023403
    583599 6y1v:A (2.4) BS01 GSP ? GO:0003924 ... P9WN95 34023403
    583600 6y1v:B (2.4) BS01 4HC ? GO:0003924 ... P9WN95 34023403

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).