SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    583601 6y1w:A (1.6) BS01 BUD ? GO:0000166 ... B0RXY9 32627741
    583602 6y1w:A (1.6) BS02 BUD ? GO:0000166 ... B0RXY9 32627741
    583603 6y1w:A (1.6) BS03 BUD ? GO:0000166 ... B0RXY9 32627741
    583604 6y1w:A (1.6) BS04 BU9 ? GO:0000166 ... B0RXY9 32627741
    583605 6y1w:B (1.6) BS01 BUD ? GO:0000166 ... B0RXY9 32627741
    583606 6y1w:B (1.6) BS02 BUD ? GO:0000166 ... B0RXY9 32627741
    583607 6y1w:B (1.6) BS03 BUD ? GO:0000166 ... B0RXY9 32627741
    583608 6y1x:A (1.95) BS01 SF4 ? GO:0003824 ... A0B690 32476412
    583609 6y1x:A (1.95) BS02 SF4 ? GO:0003824 ... A0B690 32476412
    583610 6y1x:B (1.95) BS01 SF4 ? GO:0003824 ... A0B690 32476412
    583611 6y1x:B (1.95) BS02 SF4 ? GO:0003824 ... A0B690 32476412
    583612 6y1z:A (2.82) BS01 TRP ? GO:0004888 ... P23979 32726573
    583613 6y1z:A (2.82) BS02 O7B ? GO:0004888 ... P23979 32726573
    583614 6y1z:A (2.82) BS03 O7B ? GO:0004888 ... P23979 32726573
    583615 6y1z:B (2.82) BS01 O7B ? GO:0004888 ... P23979 32726573
    583616 6y1z:B (2.82) BS02 TRP ? GO:0004888 ... P23979 32726573
    583617 6y1z:B (2.82) BS03 O7B ? GO:0004888 ... P23979 32726573
    583618 6y1z:C (2.82) BS01 O7B ? GO:0004888 ... P23979 32726573
    583619 6y1z:C (2.82) BS02 O7B ? GO:0004888 ... P23979 32726573
    583620 6y1z:C (2.82) BS03 TRP ? GO:0004888 ... P23979 32726573
    583621 6y1z:D (2.82) BS01 TRP ? GO:0004888 ... P23979 32726573
    583622 6y1z:D (2.82) BS02 O7B ? GO:0004888 ... P23979 32726573
    583623 6y1z:D (2.82) BS03 O7B ? GO:0004888 ... P23979 32726573
    583624 6y1z:E (2.82) BS01 O7B ? GO:0004888 ... P23979 32726573
    583625 6y1z:E (2.82) BS02 O7B ? GO:0004888 ... P23979 32726573
    583626 6y1z:E (2.82) BS03 TRP ? GO:0004888 ... P23979 32726573
    583627 6y20:C (1.849) BS01 NH2 ? GO:0005634 ... Q26366 33060790
    583628 6y20:D (1.849) BS01 NH2 ? GO:0005634 ... Q26366 33060790
    583629 6y21:A (3.6) BS01 P1T 4.2.1.22 GO:0004122 ... A0A125YSJ9 N/A
    583630 6y21:B (3.6) BS01 P1T 4.2.1.22 GO:0004122 ... A0A125YSJ9 N/A
    583631 6y21:D (3.6) BS01 P1T 4.2.1.22 GO:0004122 ... A0A125YSJ9 N/A
    583632 6y22:A (2.069) BS01 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    583633 6y22:A (2.069) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    583634 6y25:AAA (1.95) BS01 O6T ? GO:0005576 ... P22629 32450689
    583635 6y26:A (1.2) BS01 peptide ? N/A A0A6B7HFJ9 N/A
    583636 6y27:A (1.38) BS01 peptide ? N/A A0A2R7Z5J3 N/A
    583637 6y28:A (1.69) BS01 peptide ? N/A A0A6B7HFJ9 N/A
    583638 6y29:A (1.28) BS01 peptide ? N/A A0A2R7Z5J3 N/A
    583639 6y2a:A (1.25) BS01 peptide ? N/A A0A6B7HFJ9 N/A
    583640 6y2b:A (1.37) BS01 peptide ? N/A A0A2R7Z5J3 N/A
    583641 6y2c:A (2.0) BS01 ZN ? GO:0003676 ... Q96AE4 32778776
    583642 6y2c:B (2.0) BS01 ZN ? GO:0003676 ... Q96AE4 32778776
    583643 6y2f:A (1.95) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 32198291 BindingDB: IC50=670nM, Ki=900nM
    583644 6y2g:A (2.2) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 32198291 BindingDB: IC50=670nM, Ki=900nM
    583645 6y2g:B (2.2) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 32198291 BindingDB: IC50=670nM, Ki=900nM
    583646 6y2i:AAA (1.533) BS01 O6Z 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583647 6y2i:BBB (1.533) BS01 O6Z 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583648 6y2j:AAA (2.886) BS01 O6W 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583649 6y2j:BBB (2.886) BS01 O6W 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583650 6y2j:CCC (2.886) BS01 O6W 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583651 6y2j:DDD (2.886) BS01 O6W 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583652 6y2j:EEE (2.886) BS01 O6W 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583653 6y2j:FFF (2.886) BS01 O6W 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583654 6y2j:GGG (2.886) BS01 O6W 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583655 6y2j:HHH (2.886) BS01 O6W 2.3.1.293 GO:0004315 ... P9WQD9 32196311
    583656 6y2l:LA (3.0) BS01 rna ? GO:0002181 ... P62917 32268098
    583657 6y2l:LA (3.0) BS02 rna ? GO:0002181 ... P62917 32268098
    583658 6y2l:LA (3.0) BS03 MG ? GO:0002181 ... P62917 32268098
    583659 6y2l:LA (3.0) BS04 MG ? GO:0002181 ... P62917 32268098
    583660 6y2l:LB (3.0) BS01 rna ? GO:0002181 ... P39023 32268098
    583661 6y2l:LC (3.0) BS01 rna ? GO:0002181 ... P36578 32268098
    583662 6y2l:LC (3.0) BS02 rna ? GO:0002181 ... P36578 32268098
    583663 6y2l:LD (3.0) BS01 rna ? GO:0000027 ... P46777 32268098
    583664 6y2l:LD (3.0) BS02 rna ? GO:0000027 ... P46777 32268098
    583665 6y2l:LE (3.0) BS01 rna ? GO:0002181 ... Q02878 32268098
    583666 6y2l:LF (3.0) BS01 rna ? GO:0000463 ... P18124 32268098
    583667 6y2l:LF (3.0) BS02 rna ? GO:0000463 ... P18124 32268098
    583668 6y2l:LG (3.0) BS01 rna ? GO:0000470 ... P62424 32268098
    583669 6y2l:LG (3.0) BS02 rna ? GO:0000470 ... P62424 32268098
    583670 6y2l:LH (3.0) BS01 rna ? GO:0002181 ... P32969 32268098
    583671 6y2l:LI (3.0) BS01 rna ? GO:0000027 ... Q96L21 32268098
    583672 6y2l:LI (3.0) BS02 rna ? GO:0000027 ... Q96L21 32268098
    583673 6y2l:LJ (3.0) BS01 rna ? GO:0000027 ... P62913 32268098
    583674 6y2l:LJ (3.0) BS02 rna ? GO:0000027 ... P62913 32268098
    583675 6y2l:LJ (3.0) BS03 rna ? GO:0000027 ... P62913 32268098
    583676 6y2l:LL (3.0) BS01 rna ? GO:0001824 ... P26373 32268098
    583677 6y2l:LL (3.0) BS02 rna ? GO:0001824 ... P26373 32268098
    583678 6y2l:LM (3.0) BS01 rna ? GO:0002181 ... P50914 32268098
    583679 6y2l:LN (3.0) BS01 rna ? GO:0002181 ... P61313 32268098
    583680 6y2l:LN (3.0) BS02 rna ? GO:0002181 ... P61313 32268098
    583681 6y2l:LO (3.0) BS01 rna ? GO:0002181 ... P40429 32268098
    583682 6y2l:LP (3.0) BS01 rna ? GO:0002181 ... P18621 32268098
    583683 6y2l:LP (3.0) BS02 rna ? GO:0002181 ... P18621 32268098
    583684 6y2l:LQ (3.0) BS01 rna ? GO:0002181 ... Q07020 32268098
    583685 6y2l:LR (3.0) BS01 rna ? GO:0002181 ... P84098 32268098
    583686 6y2l:LR (3.0) BS02 rna ? GO:0002181 ... P84098 32268098
    583687 6y2l:LS (3.0) BS01 rna ? GO:0002181 ... Q02543 32268098
    583688 6y2l:LS (3.0) BS02 rna ? GO:0002181 ... Q02543 32268098
    583689 6y2l:LT (3.0) BS01 rna ? GO:0002181 ... P46778 32268098
    583690 6y2l:LT (3.0) BS02 rna ? GO:0002181 ... P46778 32268098
    583691 6y2l:LU (3.0) BS01 rna ? GO:0002181 ... P35268 32268098
    583692 6y2l:LV (3.0) BS01 rna ? GO:0000122 ... P62829 32268098
    583693 6y2l:LW (3.0) BS01 rna ? GO:0000027 ... P83731 32268098
    583694 6y2l:LX (3.0) BS01 rna ? GO:0002181 ... P62750 32268098
    583695 6y2l:LX (3.0) BS02 rna ? GO:0002181 ... P62750 32268098
    583696 6y2l:LY (3.0) BS01 rna ? GO:0002181 ... P61254 32268098
    583697 6y2l:LY (3.0) BS02 rna ? GO:0002181 ... P61254 32268098
    583698 6y2l:LZ (3.0) BS01 rna ? GO:0002181 ... P61353 32268098
    583699 6y2l:La (3.0) BS01 rna ? GO:0002181 ... P46776 32268098
    583700 6y2l:Lb (3.0) BS01 rna ? GO:0002181 ... P47914 32268098
    583701 6y2l:Lc (3.0) BS01 rna ? GO:0002181 ... P62888 32268098
    583702 6y2l:Ld (3.0) BS01 rna ? GO:0002181 ... P62899 32268098
    583703 6y2l:Le (3.0) BS01 rna ? GO:0002181 ... P62910 32268098
    583704 6y2l:Lf (3.0) BS01 rna ? GO:0000049 ... P18077 32268098
    583705 6y2l:Lg (3.0) BS01 rna ? GO:0002181 ... P49207 32268098
    583706 6y2l:Lg (3.0) BS02 ZN ? GO:0002181 ... P49207 32268098
    583707 6y2l:Lh (3.0) BS01 rna ? GO:0000463 ... P42766 32268098
    583708 6y2l:Lh (3.0) BS02 rna ? GO:0000463 ... P42766 32268098
    583709 6y2l:Li (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 32268098
    583710 6y2l:Lj (3.0) BS01 rna ? GO:0002181 ... P61927 32268098
    583711 6y2l:Lj (3.0) BS02 rna ? GO:0002181 ... P61927 32268098
    583712 6y2l:Lj (3.0) BS03 ZN ? GO:0002181 ... P61927 32268098
    583713 6y2l:Lk (3.0) BS01 rna ? GO:0001501 ... P63173 32268098
    583714 6y2l:Ll (3.0) BS01 rna ? GO:0002181 ... P62891 32268098
    583715 6y2l:Ll (3.0) BS02 rna ? GO:0002181 ... P62891 32268098
    583716 6y2l:Lm (3.0) BS01 rna ? GO:0002181 ... P62987 32268098
    583717 6y2l:Lm (3.0) BS02 ZN ? GO:0002181 ... P62987 32268098
    583718 6y2l:Lo (3.0) BS01 rna ? GO:0002181 ... P83881 32268098
    583719 6y2l:Lo (3.0) BS02 rna ? GO:0002181 ... P83881 32268098
    583720 6y2l:Lo (3.0) BS03 ZN ? GO:0002181 ... P83881 32268098
    583721 6y2l:Lp (3.0) BS01 rna ? GO:0002181 ... P61513 32268098
    583722 6y2l:Lp (3.0) BS02 ZN ? GO:0002181 ... P61513 32268098
    583723 6y2l:Lr (3.0) BS01 rna ? GO:0002181 ... P46779 32268098
    583724 6y2l:SA (3.0) BS01 rna ? GO:0000028 ... P08865 32268098
    583725 6y2l:SB (3.0) BS01 rna ? GO:0002181 ... P61247 32268098
    583726 6y2l:SC (3.0) BS01 rna ? GO:0002181 ... P15880 32268098
    583727 6y2l:SD (3.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32268098
    583728 6y2l:SE (3.0) BS01 rna ? GO:0002181 ... P62701 32268098
    583729 6y2l:SF (3.0) BS01 rna ? GO:0000028 ... P46782 32268098
    583730 6y2l:SG (3.0) BS01 rna ? GO:0000082 ... P62753 32268098
    583731 6y2l:SH (3.0) BS01 rna ? GO:0001843 ... P62081 32268098
    583732 6y2l:SI (3.0) BS01 rna ? GO:0000462 ... P62241 32268098
    583733 6y2l:SI (3.0) BS02 rna ? GO:0000462 ... P62241 32268098
    583734 6y2l:SJ (3.0) BS01 rna ? GO:0002181 ... P46781 32268098
    583735 6y2l:SK (3.0) BS01 rna ? GO:0002181 ... P46783 32268098
    583736 6y2l:SL (3.0) BS01 rna ? GO:0002181 ... P62280 32268098
    583737 6y2l:SN (3.0) BS01 rna ? GO:0002181 ... P62277 32268098
    583738 6y2l:SO (3.0) BS01 rna ? GO:0000028 ... P62263 32268098
    583739 6y2l:SP (3.0) BS01 rna ? GO:0000028 ... P62841 32268098
    583740 6y2l:SP (3.0) BS02 rna ? GO:0000028 ... P62841 32268098
    583741 6y2l:SQ (3.0) BS01 rna ? GO:0000462 ... P62249 32268098
    583742 6y2l:SR (3.0) BS01 rna ? GO:0002181 ... P08708 32268098
    583743 6y2l:SS (3.0) BS01 rna ? GO:0002181 ... P62269 32268098
    583744 6y2l:ST (3.0) BS01 rna ? GO:0000028 ... P39019 32268098
    583745 6y2l:SU (3.0) BS01 rna ? GO:0002181 ... P60866 32268098
    583746 6y2l:SW (3.0) BS01 rna ? GO:0002181 ... P62244 32268098
    583747 6y2l:SX (3.0) BS01 rna ? GO:0002181 ... P62266 32268098
    583748 6y2l:SY (3.0) BS01 rna ? GO:0002181 ... P62847 32268098
    583749 6y2l:SZ (3.0) BS01 rna ? GO:0002181 ... P62851 32268098
    583750 6y2l:Sa (3.0) BS01 rna ? GO:0002181 ... P62854 32268098
    583751 6y2l:Sa (3.0) BS02 ZN ? GO:0002181 ... P62854 32268098
    583752 6y2l:Sb (3.0) BS01 rna ? GO:0000028 ... P42677 32268098
    583753 6y2l:Sc (3.0) BS01 rna ? GO:0000028 ... P62857 32268098
    583754 6y2l:Sd (3.0) BS01 rna ? GO:0002181 ... P62273 32268098
    583755 6y2l:Sd (3.0) BS02 ZN ? GO:0002181 ... P62273 32268098
    583756 6y2l:Se (3.0) BS01 rna ? GO:0003735 ... P62861 32268098
    583757 6y2l:Sg (3.0) BS01 rna ? GO:0001891 ... P63244 32268098
    583758 6y2m:AAA (1.95) BS01 O6T ? GO:0005576 ... P22629 32450689
    583759 6y2n:A (2.4) BS01 MN3 1.17.4.1 GO:0004748 ... A4F980 32876583
    583760 6y2n:A (2.4) BS02 FE 1.17.4.1 GO:0004748 ... A4F980 32876583
    583761 6y2o:A (2.01) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    583762 6y2o:A (2.01) BS02 O72 2.7.11.11 GO:0000287 ... P25321 N/A
    583763 6y2t:AAA (1.55) BS01 O6T ? GO:0005576 ... P22629 32450689
    583764 6y2t:AAA (1.55) BS02 O6T ? GO:0005576 ... P22629 32450689
    583765 6y2u:A (1.93) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    583766 6y2u:A (1.93) BS02 LRT 2.7.11.11 GO:0000287 ... P25321 N/A
    583767 6y2v:A (2.0) BS01 PO4 3.1.3.2
    3.1.3.48
    GO:0003993 ... P24666 32584877
    583768 6y2x:A (1.77) BS01 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    583769 6y2x:A (1.77) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    583770 6y2x:B (1.77) BS01 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    583771 6y2x:B (1.77) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    583772 6y2y:A (1.7) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 34337604
    583773 6y2z:A (2.15) BS01 MG 3.6.5.4 GO:0003924 ... P61011 33053321
    583774 6y32:A (2.6) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    583775 6y32:A (2.6) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    583776 6y32:B (2.6) BS01 GNP ? GO:0005525 ... P08240 33053321
    583777 6y32:B (2.6) BS02 GNP ? GO:0005525 ... P08240 33053321
    583778 6y32:C (2.6) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    583779 6y32:C (2.6) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    583780 6y32:D (2.6) BS01 GNP ? GO:0005525 ... P08240 33053321
    583781 6y32:D (2.6) BS02 GNP ? GO:0005525 ... P08240 33053321
    583782 6y32:E (2.6) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    583783 6y32:E (2.6) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    583784 6y32:F (2.6) BS01 GNP ? GO:0005525 ... P08240 33053321
    583785 6y32:F (2.6) BS02 GNP ? GO:0005525 ... P08240 33053321
    583786 6y32:G (2.6) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    583787 6y32:G (2.6) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    583788 6y32:H (2.6) BS01 GNP ? GO:0005525 ... P08240 33053321
    583789 6y32:H (2.6) BS02 GNP ? GO:0005525 ... P08240 33053321
    583790 6y33:AAA (1.49) BS01 O7Q ? GO:0005576 ... P22629 32450689
    583791 6y34:AAA (1.307) BS01 O7Q ? GO:0005576 ... P22629 32450689
    583792 6y35:A (2.6) BS01 dna ? GO:0003700 ... Q4X049 32467317
    583793 6y35:A (2.6) BS02 dna ? GO:0003700 ... Q4X049 32467317
    583794 6y35:B (2.6) BS01 dna ? GO:0001228 ... A0A229Y8Y1 32467317
    583795 6y35:B (2.6) BS02 dna ? GO:0001228 ... A0A229Y8Y1 32467317
    583796 6y35:C (2.6) BS01 dna ? GO:0003677 ... Q4WDM9 32467317
    583797 6y35:C (2.6) BS02 dna ? GO:0003677 ... Q4WDM9 32467317
    583798 6y36:A (2.3) BS01 dna ? GO:0003700 ... Q4X049 32467317
    583799 6y36:A (2.3) BS02 dna ? GO:0003700 ... Q4X049 32467317
    583800 6y36:B (2.3) BS01 dna ? GO:0001228 ... A0A229Y8Y1 32467317

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).