SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    584201 6y62:B (2.2) BS01 MAN ? GO:0019049 ... Q5MYC0 32937107
    584202 6y63:AAA (1.651) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584203 6y63:AAA (1.651) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584204 6y63:BBB (1.651) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584205 6y63:DDD (1.651) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584206 6y63:EEE (1.651) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584207 6y63:EEE (1.651) BS02 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584208 6y63:GGG (1.651) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584209 6y63:HHH (1.651) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584210 6y63:HHH (1.651) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584211 6y63:III (1.651) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584212 6y63:III (1.651) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584213 6y64:A (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584214 6y64:B (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584215 6y64:B (1.6) BS02 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584216 6y64:C (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584217 6y64:C (1.6) BS02 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584218 6y64:C (1.6) BS03 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584219 6y64:D (1.6) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584220 6y64:E (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584221 6y64:F (1.6) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584222 6y64:F (1.6) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584223 6y64:G (1.6) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584224 6y64:G (1.6) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584225 6y64:H (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584226 6y64:H (1.6) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584227 6y64:I (1.6) BS01 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584228 6y64:J (1.6) BS01 SIA ? GO:0005198 ... A0A0E3ZCF3 32723915
    584229 6y64:J (1.6) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 32723915
    584230 6y66:AAA (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584231 6y66:BBB (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584232 6y66:CCC (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584233 6y66:DDD (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584234 6y66:EEE (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584235 6y66:FFF (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584236 6y66:GGG (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584237 6y66:HHH (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584238 6y66:III (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584239 6y66:JJJ (1.95) BS01 MNA ? GO:0005198 ... Q80FI3 32723915
    584240 6y69:0 (2.86) BS01 rna ? GO:0000027 ... P0A7N4 32601485
    584241 6y69:1 (2.86) BS01 rna ? GO:0000027 ... P0A7N9 32601485
    584242 6y69:2 (2.86) BS01 rna ? GO:0002181 ... P0A7P5 32601485
    584243 6y69:3 (2.86) BS01 rna ? GO:0002181 ... P0A7Q1 32601485
    584244 6y69:4 (2.86) BS01 rna ? GO:0002181 ... P0A7Q6 32601485
    584245 6y69:6 (2.86) BS01 rna ? GO:0002181 ... P0A7M9 32601485
    584246 6y69:C (2.86) BS01 rna ? GO:0000027 ... P60422 32601485
    584247 6y69:D (2.86) BS01 rna ? GO:0000027 ... P60438 32601485
    584248 6y69:E (2.86) BS01 rna ? GO:0001070 ... P60723 32601485
    584249 6y69:F (2.86) BS01 rna ? GO:0000027 ... P62399 32601485
    584250 6y69:F (2.86) BS02 rna ? GO:0000027 ... P62399 32601485
    584251 6y69:G (2.86) BS01 rna ? GO:0000027 ... P0AG55 32601485
    584252 6y69:J (2.86) BS01 rna ? GO:0002181 ... P0AA10 32601485
    584253 6y69:K (2.86) BS01 rna ? GO:0002181 ... P0ADY3 32601485
    584254 6y69:L (2.86) BS01 rna ? GO:0002181 ... P02413 32601485
    584255 6y69:M (2.86) BS01 rna ? GO:0000027 ... P0ADY7 32601485
    584256 6y69:M (2.86) BS02 rna ? GO:0000027 ... P0ADY7 32601485
    584257 6y69:N (2.86) BS01 rna ? GO:0000027 ... P0AG44 32601485
    584258 6y69:O (2.86) BS01 rna ? GO:0002181 ... P0C018 32601485
    584259 6y69:O (2.86) BS02 rna ? GO:0002181 ... P0C018 32601485
    584260 6y69:P (2.86) BS01 rna ? GO:0000027 ... P0A7K6 32601485
    584261 6y69:P (2.86) BS02 rna ? GO:0000027 ... P0A7K6 32601485
    584262 6y69:Q (2.86) BS01 rna ? GO:0000027 ... P0A7L3 32601485
    584263 6y69:R (2.86) BS01 rna ? GO:0002181 ... P0AG48 32601485
    584264 6y69:S (2.86) BS01 rna ? GO:0002181 ... P61175 32601485
    584265 6y69:T (2.86) BS01 rna ? GO:0000027 ... P0ADZ0 32601485
    584266 6y69:U (2.86) BS01 rna ? GO:0000027 ... P60624 32601485
    584267 6y69:V (2.86) BS01 rna ? GO:0000027 ... P68919 32601485
    584268 6y69:V (2.86) BS02 rna ? GO:0000027 ... P68919 32601485
    584269 6y69:W (2.86) BS01 rna ? GO:0003735 ... P0A7L8 32601485
    584270 6y69:W (2.86) BS02 rna ? GO:0003735 ... P0A7L8 32601485
    584271 6y69:X (2.86) BS01 rna ? GO:0000027 ... P0A7M2 32601485
    584272 6y69:Y (2.86) BS01 rna ? GO:0000027 ... P0A7M6 32601485
    584273 6y69:Z (2.86) BS01 rna ? GO:0000027 ... P0AG51 32601485
    584274 6y69:Z (2.86) BS02 rna ? GO:0000027 ... P0AG51 32601485
    584275 6y69:b (2.86) BS01 rna ? GO:0000028 ... P0A7V0 32601485
    584276 6y69:c (2.86) BS01 rna ? GO:0003676 ... P0A7V3 32601485
    584277 6y69:d (2.86) BS01 rna ? GO:0000028 ... P0A7V8 32601485
    584278 6y69:e (2.86) BS01 rna ? GO:0000028 ... P0A7W1 32601485
    584279 6y69:f (2.86) BS01 rna ? GO:0003735 ... P02358 32601485
    584280 6y69:g (2.86) BS01 rna ? GO:0003723 ... P02359 32601485
    584281 6y69:g (2.86) BS02 rna ? GO:0003723 ... P02359 32601485
    584282 6y69:h (2.86) BS01 rna ? GO:0000028 ... P0A7W7 32601485
    584283 6y69:i (2.86) BS01 rna ? GO:0000049 ... P0A7X3 32601485
    584284 6y69:j (2.86) BS01 rna ? GO:0000049 ... P0A7R5 32601485
    584285 6y69:k (2.86) BS01 rna ? GO:0002181 ... P0A7R9 32601485
    584286 6y69:l (2.86) BS01 rna ? GO:0000049 ... P0A7S3 32601485
    584287 6y69:m (2.86) BS01 rna ? GO:0000049 ... P0A7S9 32601485
    584288 6y69:n (2.86) BS01 rna ? GO:0003735 ... P0AG59 32601485
    584289 6y69:o (2.86) BS01 rna ? GO:0000028 ... P0ADZ4 32601485
    584290 6y69:o (2.86) BS02 rna ? GO:0000028 ... P0ADZ4 32601485
    584291 6y69:p (2.86) BS01 rna ? GO:0000028 ... P0A7T3 32601485
    584292 6y69:q (2.86) BS01 rna ? GO:0000028 ... P0AG63 32601485
    584293 6y69:r (2.86) BS01 rna ? GO:0003735 ... P0A7T7 32601485
    584294 6y69:s (2.86) BS01 rna ? GO:0003723 ... P0A7U3 32601485
    584295 6y69:t (2.86) BS01 rna ? GO:0000028 ... P0A7U7 32601485
    584296 6y69:u (2.86) BS01 rna ? GO:0000028 ... P68679 32601485
    584297 6y69:x (2.86) BS01 rna ? GO:0005515 ... P0AFX0 32601485
    584298 6y69:x (2.86) BS02 rna ? GO:0005515 ... P0AFX0 32601485
    584299 6y6a:A (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584300 6y6a:B (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584301 6y6a:C (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584302 6y6a:E (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584303 6y6a:F (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584304 6y6a:G (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584305 6y6a:I (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584306 6y6a:J (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584307 6y6a:K (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584308 6y6a:L (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584309 6y6a:M (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584310 6y6a:N (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584311 6y6a:O (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584312 6y6a:Q (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584313 6y6a:R (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584314 6y6a:S (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584315 6y6a:T (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584316 6y6a:V (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584317 6y6a:X (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584318 6y6a:Y (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584319 6y6a:Z (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584320 6y6a:a (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584321 6y6a:b (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584322 6y6a:c (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584323 6y6a:d (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584324 6y6a:e (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584325 6y6a:f (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584326 6y6a:j (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584327 6y6a:n (2.65) BS01 SIA ? GO:0005198 ... R4UMH0 32723915
    584328 6y6b:A (3.08) BS01 peptide ? GO:0002842 ... P61981 33146997
    584329 6y6b:B (3.08) BS01 peptide ? GO:0002842 ... P61981 33146997
    584330 6y6b:B (3.08) BS02 OD8 ? GO:0002842 ... P61981 33146997
    584331 6y6d:A (2.2) BS01 GTP 3.6.5.- GO:0000226 ... P81947 32657585
    584332 6y6d:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 32657585
    584333 6y6d:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 32657585
    584334 6y6d:B (2.2) BS02 OBQ ? GO:0000226 ... Q6B856 32657585
    584335 6y6d:C (2.2) BS01 GTP 3.6.5.- GO:0000226 ... P81947 32657585
    584336 6y6d:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 32657585
    584337 6y6d:D (2.2) BS01 GDP ? GO:0000226 ... Q6B856 32657585
    584338 6y6d:D (2.2) BS02 MG ? GO:0000226 ... Q6B856 32657585
    584339 6y6d:D (2.2) BS03 OBQ ? GO:0000226 ... Q6B856 32657585
    584340 6y6d:F (2.2) BS01 ACP N/A GO:0036211 ... N/A 32657585
    584341 6y6d:F (2.2) BS02 MG N/A GO:0036211 ... N/A 32657585
    584342 6y6f:A (1.98) BS01 OD2 2.7.11.1 GO:0004672 ... O94768 33215924
    584343 6y6h:A (1.95) BS01 OBW 2.7.11.1 GO:0004672 ... O94768 33215924
    584344 6y6i:A (1.92) BS01 UDP 2.4.1.- GO:0009103 ... Q06994 N/A
    584345 6y6j:A (1.5) BS01 OEN 3.5.2.6 GO:0046872 ... D1MEN9 N/A
    584346 6y6j:A (1.5) BS02 OEQ 3.5.2.6 GO:0046872 ... D1MEN9 N/A
    584347 6y6j:A (1.5) BS03 ZN 3.5.2.6 GO:0046872 ... D1MEN9 N/A
    584348 6y6j:A (1.5) BS04 ZN 3.5.2.6 GO:0046872 ... D1MEN9 N/A
    584349 6y6n:A (2.03) BS01 ODQ ? GO:0005576 ... P08476 N/A
    584350 6y6o:A (2.04) BS01 OCK ? GO:0005576 ... P08476 N/A
    584351 6y6s:A (2.1) BS01 ODW 3.2.1.46 GO:0004336 ... P54818 33488964
    584352 6y6s:A (2.1) BS02 CA 3.2.1.46 GO:0004336 ... P54818 33488964
    584353 6y6t:A (2.25) BS01 ODW 3.2.1.46 GO:0004336 ... P54818 33488964
    584354 6y6t:A (2.25) BS02 CA 3.2.1.46 GO:0004336 ... P54818 33488964
    584355 6y6u:A (1.55) BS01 ODZ 3.4.16.4 GO:0005886 ... G3XD46 N/A
    584356 6y6v:A (2.1) BS01 OE5 2.7.11.24 GO:0000077 ... P47811 33035818
    584357 6y6x:LA (2.8) BS01 rna ? GO:0002181 ... P62917 32601485
    584358 6y6x:LA (2.8) BS02 MG ? GO:0002181 ... P62917 32601485
    584359 6y6x:LB (2.8) BS01 rna ? GO:0002181 ... P39023 32601485
    584360 6y6x:LC (2.8) BS01 rna ? GO:0003735 ... P36578 32601485
    584361 6y6x:LC (2.8) BS02 rna ? GO:0003735 ... P36578 32601485
    584362 6y6x:LD (2.8) BS01 rna ? GO:0000027 ... P46777 32601485
    584363 6y6x:LD (2.8) BS02 rna ? GO:0000027 ... P46777 32601485
    584364 6y6x:LE (2.8) BS01 rna ? GO:0003735 ... Q02878 32601485
    584365 6y6x:LF (2.8) BS01 rna ? GO:0000463 ... P18124 32601485
    584366 6y6x:LF (2.8) BS02 rna ? GO:0000463 ... P18124 32601485
    584367 6y6x:LG (2.8) BS01 rna ? GO:0000470 ... P62424 32601485
    584368 6y6x:LG (2.8) BS02 rna ? GO:0000470 ... P62424 32601485
    584369 6y6x:LH (2.8) BS01 rna ? GO:0002181 ... P32969 32601485
    584370 6y6x:LI (2.8) BS01 rna ? GO:0000027 ... Q96L21 32601485
    584371 6y6x:LI (2.8) BS02 rna ? GO:0000027 ... Q96L21 32601485
    584372 6y6x:LJ (2.8) BS01 rna ? GO:0000027 ... P62913 32601485
    584373 6y6x:LJ (2.8) BS02 rna ? GO:0000027 ... P62913 32601485
    584374 6y6x:LL (2.8) BS01 rna ? GO:0001824 ... P26373 32601485
    584375 6y6x:LL (2.8) BS02 rna ? GO:0001824 ... P26373 32601485
    584376 6y6x:LM (2.8) BS01 rna ? GO:0003723 ... P50914 32601485
    584377 6y6x:LN (2.8) BS01 rna ? GO:0002181 ... P61313 32601485
    584378 6y6x:LN (2.8) BS02 rna ? GO:0002181 ... P61313 32601485
    584379 6y6x:LO (2.8) BS01 rna ? GO:0002181 ... P40429 32601485
    584380 6y6x:LP (2.8) BS01 rna ? GO:0003735 ... P18621 32601485
    584381 6y6x:LP (2.8) BS02 rna ? GO:0003735 ... P18621 32601485
    584382 6y6x:LQ (2.8) BS01 rna ? GO:0002181 ... Q07020 32601485
    584383 6y6x:LR (2.8) BS01 rna ? GO:0002181 ... P84098 32601485
    584384 6y6x:LS (2.8) BS01 rna ? GO:0002181 ... Q02543 32601485
    584385 6y6x:LS (2.8) BS02 rna ? GO:0002181 ... Q02543 32601485
    584386 6y6x:LT (2.8) BS01 rna ? GO:0002181 ... P46778 32601485
    584387 6y6x:LT (2.8) BS02 rna ? GO:0002181 ... P46778 32601485
    584388 6y6x:LU (2.8) BS01 rna ? GO:0003735 ... P35268 32601485
    584389 6y6x:LV (2.8) BS01 rna ? GO:0000122 ... P62829 32601485
    584390 6y6x:LW (2.8) BS01 rna ? GO:0003735 ... P83731 32601485
    584391 6y6x:LX (2.8) BS01 rna ? GO:0003735 ... P62750 32601485
    584392 6y6x:LX (2.8) BS02 rna ? GO:0003735 ... P62750 32601485
    584393 6y6x:LY (2.8) BS01 rna ? GO:0002181 ... P61254 32601485
    584394 6y6x:LY (2.8) BS02 rna ? GO:0002181 ... P61254 32601485
    584395 6y6x:LZ (2.8) BS01 rna ? GO:0002181 ... P61353 32601485
    584396 6y6x:La (2.8) BS01 rna ? GO:0002181 ... P46776 32601485
    584397 6y6x:Lb (2.8) BS01 rna ? GO:0003735 ... P47914 32601485
    584398 6y6x:Lc (2.8) BS01 rna ? GO:0003723 ... P62888 32601485
    584399 6y6x:Ld (2.8) BS01 rna ? GO:0003735 ... P62899 32601485
    584400 6y6x:Le (2.8) BS01 rna ? GO:0002181 ... P62910 32601485

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).