SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    584401 6y6x:Le (2.8) BS02 MG ? GO:0002181 ... P62910 32601485
    584402 6y6x:Lf (2.8) BS01 rna ? GO:0000049 ... P18077 32601485
    584403 6y6x:Lg (2.8) BS01 rna ? GO:0002181 ... P49207 32601485
    584404 6y6x:Lg (2.8) BS02 MG ? GO:0002181 ... P49207 32601485
    584405 6y6x:Lh (2.8) BS01 rna ? GO:0000463 ... P42766 32601485
    584406 6y6x:Lh (2.8) BS02 rna ? GO:0000463 ... P42766 32601485
    584407 6y6x:Li (2.8) BS01 rna ? GO:0002181 ... Q9Y3U8 32601485
    584408 6y6x:Lj (2.8) BS01 rna ? GO:0003735 ... P61927 32601485
    584409 6y6x:Lj (2.8) BS02 rna ? GO:0003735 ... P61927 32601485
    584410 6y6x:Lj (2.8) BS03 ZN ? GO:0003735 ... P61927 32601485
    584411 6y6x:Lk (2.8) BS01 rna ? GO:0001501 ... P63173 32601485
    584412 6y6x:Ll (2.8) BS01 rna ? GO:0002181 ... P62891 32601485
    584413 6y6x:Ll (2.8) BS02 rna ? GO:0002181 ... P62891 32601485
    584414 6y6x:Lm (2.8) BS01 rna ? GO:0003735 ... P62987 32601485
    584415 6y6x:Lm (2.8) BS02 ZN ? GO:0003735 ... P62987 32601485
    584416 6y6x:Lo (2.8) BS01 rna ? GO:0002181 ... P83881 32601485
    584417 6y6x:Lo (2.8) BS02 ZN ? GO:0002181 ... P83881 32601485
    584418 6y6x:Lp (2.8) BS01 rna ? GO:0002181 ... P61513 32601485
    584419 6y6x:Lp (2.8) BS02 ZN ? GO:0002181 ... P61513 32601485
    584420 6y6x:Lr (2.8) BS01 rna ? GO:0002181 ... P46779 32601485
    584421 6y6x:Lz (2.8) BS01 rna ? GO:0002181 ... P62906 32601485
    584422 6y6y:A (1.67) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    584423 6y6y:A (1.67) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584424 6y6y:B (1.67) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    584425 6y6y:B (1.67) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584426 6y6z:A (1.7) BS01 OEE 3.4.16.4 GO:0005886 ... G3XD46 34094333
    584427 6y71:A (1.64) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    584428 6y71:A (1.64) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584429 6y71:B (1.64) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    584430 6y71:B (1.64) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584431 6y72:A (1.55) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    584432 6y72:A (1.55) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584433 6y72:B (1.55) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    584434 6y72:B (1.55) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584435 6y74:A (1.53) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 N/A
    584436 6y74:B (1.53) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 N/A
    584437 6y75:A (2.3) BS01 ZN 2.4.2.31 N/A Q236S9 33444728
    584438 6y75:B (2.3) BS01 ZN 2.4.2.31 N/A Q236S9 33444728
    584439 6y75:C (2.3) BS01 ZN 2.4.2.31 N/A Q236S9 33444728
    584440 6y75:D (2.3) BS01 ZN 2.4.2.31 N/A Q236S9 33444728
    584441 6y77:A (1.49) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    584442 6y77:A (1.49) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584443 6y77:B (1.49) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    584444 6y77:B (1.49) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584445 6y78:A (1.7) BS01 BGC ? GO:0030246 ... P17931 32876583
    584446 6y78:A (1.7) BS02 GAL ? GO:0030246 ... P17931 32876583
    584447 6y79:1 (2.96) BS01 UQ9 7.1.1.2 GO:0003954 ... Q9B6E8 33243981
    584448 6y79:1 (2.96) BS02 T7X 7.1.1.2 GO:0003954 ... Q9B6E8 33243981
    584449 6y79:2 (2.96) BS01 LMN 7.1.1.2 GO:0005739 ... Q9B6C8 33243981
    584450 6y79:2 (2.96) BS02 T7X 7.1.1.2 GO:0005739 ... Q9B6C8 33243981
    584451 6y79:2 (2.96) BS03 T7X 7.1.1.2 GO:0005739 ... Q9B6C8 33243981
    584452 6y79:3 (2.96) BS01 T7X 7.1.1.2 GO:0005739 ... Q9B6C7 33243981
    584453 6y79:4 (2.96) BS01 LMN 7.1.1.2 GO:0003954 ... Q9B6D6 33243981
    584454 6y79:4 (2.96) BS02 LMN 7.1.1.2 GO:0003954 ... Q9B6D6 33243981
    584455 6y79:4 (2.96) BS03 T7X 7.1.1.2 GO:0003954 ... Q9B6D6 33243981
    584456 6y79:A (2.96) BS01 SF4 1.6.99.3 GO:0008137 ... F2Z6F1 33243981
    584457 6y79:A (2.96) BS02 SF4 1.6.99.3 GO:0008137 ... F2Z6F1 33243981
    584458 6y79:A (2.96) BS03 FES 1.6.99.3 GO:0008137 ... F2Z6F1 33243981
    584459 6y79:B (2.96) BS01 SF4 7.1.1.2 GO:0005739 ... F2Z660 33243981
    584460 6y79:B (2.96) BS02 FMN 7.1.1.2 GO:0005739 ... F2Z660 33243981
    584461 6y79:C (2.96) BS01 SF4 1.6.99.3 GO:0005739 ... F2Z626 33243981
    584462 6y79:E (2.96) BS01 NDP ? GO:0005739 ... Q6C7X4 33243981
    584463 6y79:E (2.96) BS02 T7X ? GO:0005739 ... Q6C7X4 33243981
    584464 6y79:H (2.96) BS01 FES 1.6.99.3 GO:0016491 ... F2Z6C0 33243981
    584465 6y79:I (2.96) BS01 SF4 1.6.99.3 GO:0003954 ... F2Z619 33243981
    584466 6y79:I (2.96) BS02 SF4 1.6.99.3 GO:0003954 ... F2Z619 33243981
    584467 6y79:J (2.96) BS01 LMN ? GO:0005739 ... Q6C674 33243981
    584468 6y79:J (2.96) BS02 LMN ? GO:0005739 ... Q6C674 33243981
    584469 6y79:K (2.96) BS01 SF4 1.6.99.3 GO:0005739 ... Q9UUT7 33243981
    584470 6y79:K (2.96) BS02 UQ9 1.6.99.3 GO:0005739 ... Q9UUT7 33243981
    584471 6y79:K (2.96) BS03 T7X 1.6.99.3 GO:0005739 ... Q9UUT7 33243981
    584472 6y79:M (2.96) BS01 ZN ? GO:0005739 ... Q6C8J9 33243981
    584473 6y79:O (2.96) BS01 ZMP ? GO:0000035 ... Q6C926 33243981
    584474 6y79:P (2.96) BS01 ZMP ? GO:0005739 ... Q6CI60 33243981
    584475 6y79:Q (2.96) BS01 ZMP ? GO:0000035 ... Q6C7X2 33243981
    584476 6y79:R (2.96) BS01 ZMP ? GO:0005739 ... Q6C9Z1 33243981
    584477 6y79:X (2.96) BS01 T7X ? GO:0016020 ... Q6C4A6 33243981
    584478 6y79:b (2.96) BS01 T7X ? N/A A0A1D8NGI5 33243981
    584479 6y79:j (2.96) BS01 LMN 1.6.99.3 GO:0016020 ... B5RSK9 33243981
    584480 6y79:j (2.96) BS02 LMN 1.6.99.3 GO:0016020 ... B5RSK9 33243981
    584481 6y7a:A (1.4) BS01 OEH 3.8.1.5 GO:0003824 ... P0A3G3 34339177
    584482 6y7b:A (3.1) BS01 OEK 3.8.1.5 GO:0003824 ... P0A3G3 34339177
    584483 6y7b:B (3.1) BS01 OEK 3.8.1.5 GO:0003824 ... P0A3G3 34339177
    584484 6y7b:C (3.1) BS01 OEK 3.8.1.5 GO:0003824 ... P0A3G3 34339177
    584485 6y7b:D (3.1) BS01 OEK 3.8.1.5 GO:0003824 ... P0A3G3 34339177
    584486 6y7b:E (3.1) BS01 OEK 3.8.1.5 GO:0003824 ... P0A3G3 34339177
    584487 6y7b:E (3.1) BS02 OEK 3.8.1.5 GO:0003824 ... P0A3G3 34339177
    584488 6y7c:A (3.8) BS01 rna ? GO:0000028 ... P32905 32138239
    584489 6y7c:B (3.8) BS01 rna ? GO:0000462 ... P33442 32138239
    584490 6y7c:C (3.8) BS01 rna ? GO:0000054 ... P25443 32138239
    584491 6y7c:E (3.8) BS01 rna ? GO:0002181 ... P0CX35 32138239
    584492 6y7c:F (3.8) BS01 rna ? GO:0000028 ... P26783 32138239
    584493 6y7c:G (3.8) BS01 rna ? GO:0000462 ... P0CX37 32138239
    584494 6y7c:H (3.8) BS01 rna ? GO:0002181 ... P26786 32138239
    584495 6y7c:I (3.8) BS01 rna ? GO:0000462 ... P0CX39 32138239
    584496 6y7c:J (3.8) BS01 rna ? GO:0000462 ... O13516 32138239
    584497 6y7c:L (3.8) BS01 rna ? GO:0000028 ... P0CX47 32138239
    584498 6y7c:M (3.8) BS01 rna ? GO:0000028 ... P48589 32138239
    584499 6y7c:N (3.8) BS01 rna ? GO:0000462 ... P05756 32138239
    584500 6y7c:O (3.8) BS01 rna ? GO:0000028 ... P06367 32138239
    584501 6y7c:P (3.8) BS01 rna ? GO:0000028 ... Q01855 32138239
    584502 6y7c:Q (3.8) BS01 rna ? GO:0000462 ... P0CX51 32138239
    584503 6y7c:R (3.8) BS01 rna ? GO:0000028 ... P02407 32138239
    584504 6y7c:S (3.8) BS01 rna ? GO:0000054 ... P0CX55 32138239
    584505 6y7c:T (3.8) BS01 rna ? GO:0000028 ... P07280 32138239
    584506 6y7c:U (3.8) BS01 rna ? GO:0000462 ... P38701 32138239
    584507 6y7c:W (3.8) BS01 rna ? GO:0002181 ... P0C0W1 32138239
    584508 6y7c:X (3.8) BS01 rna ? GO:0000462 ... P0CX29 32138239
    584509 6y7c:Y (3.8) BS01 rna ? GO:0000462 ... P0CX31 32138239
    584510 6y7c:Z (3.8) BS01 rna ? GO:0002181 ... Q3E792 32138239
    584511 6y7c:b (3.8) BS01 rna ? GO:0000028 ... P35997 32138239
    584512 6y7c:c (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 32138239
    584513 6y7c:e (3.8) BS01 rna ? GO:0002181 ... P0CX33 32138239
    584514 6y7c:h (3.8) BS01 rna ? GO:0000056 ... Q99216 32138239
    584515 6y7c:i (3.8) BS01 rna ? GO:0000447 ... P38333 32138239
    584516 6y7c:l (3.8) BS01 rna 2.7.11.1 GO:0000462 ... P40160 32138239
    584517 6y7c:t (3.8) BS01 rna ? GO:0000461 ... Q07381 32138239
    584518 6y7d:A (1.6) BS01 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584519 6y7d:B (1.6) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    584520 6y7d:B (1.6) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584521 6y7e:A (1.6) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    584522 6y7e:A (1.6) BS02 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    584523 6y7e:A (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584524 6y7e:B (1.6) BS01 ZN 1.7.2.4 GO:0004129 ... P19573 34164092
    584525 6y7e:B (1.6) BS02 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    584526 6y7e:B (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... P19573 34164092
    584527 6y7f:A (2.052) BS01 OFN 2.3.1.199 GO:0005515 ... A1L3X0 N/A
    584528 6y7f:A (2.052) BS02 37X 2.3.1.199 GO:0005515 ... A1L3X0 N/A
    584529 6y7f:B (2.052) BS01 OFN 2.3.1.199 GO:0005515 ... A1L3X0 N/A
    584530 6y7f:B (2.052) BS02 37X 2.3.1.199 GO:0005515 ... A1L3X0 N/A
    584531 6y7g:A (2.3) BS01 GDP ? GO:0003924 ... Q96E17 N/A
    584532 6y7g:B (2.3) BS01 GDP ? GO:0003924 ... Q96E17 N/A
    584533 6y7h:A (1.8) BS01 OFK ? N/A Q9H8M2 N/A
    584534 6y7h:B (1.8) BS01 OFK ? N/A Q9H8M2 N/A
    584535 6y7i:A (1.6) BS01 OF8 ? N/A Q9H8M2 N/A
    584536 6y7i:B (1.6) BS01 OF8 ? N/A Q9H8M2 N/A
    584537 6y7j:A (1.6) BS01 OF5 ? N/A Q9H8M2 N/A
    584538 6y7j:A (1.6) BS02 OF5 ? N/A Q9H8M2 N/A
    584539 6y7j:B (1.6) BS01 OF5 ? N/A Q9H8M2 N/A
    584540 6y7k:A (1.2) BS01 OEZ ? N/A Q9H8M2 N/A
    584541 6y7l:A (1.8) BS01 QMG ? N/A Q9H8M2 N/A BindingDB: Kd=33nM
    584542 6y7m:AAA (1.9) BS01 OEW 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 32198291
    584543 6y7o:A (2.3) BS01 SIW N/A N/A N/A N/A
    584544 6y7o:A (2.3) BS02 SIW N/A N/A N/A N/A
    584545 6y7o:A (2.3) BS03 SIW N/A N/A N/A N/A
    584546 6y7o:A (2.3) BS04 SIW N/A N/A N/A N/A
    584547 6y7o:B (2.3) BS01 SIW N/A N/A N/A N/A
    584548 6y7o:B (2.3) BS02 SIW N/A N/A N/A N/A
    584549 6y7o:B (2.3) BS03 SIW N/A N/A N/A N/A
    584550 6y7o:C (2.3) BS01 SIW N/A N/A N/A N/A
    584551 6y7o:C (2.3) BS02 SIW N/A N/A N/A N/A
    584552 6y7o:C (2.3) BS03 SIW N/A N/A N/A N/A
    584553 6y7p:A (1.75) BS01 ZRW N/A N/A N/A N/A
    584554 6y7p:A (1.75) BS02 ZRW N/A N/A N/A N/A
    584555 6y7r:A (1.6) BS01 FMN 2.7.13.3 N/A B8GAY9 N/A
    584556 6y7r:B (1.6) BS01 FMN 2.7.13.3 N/A B8GAY9 N/A
    584557 6y7t:A (2.5) BS01 peptide ? GO:0000122 ... P31947 34427424
    584558 6y7t:A (2.5) BS02 TWZ ? GO:0000122 ... P31947 34427424
    584559 6y7t:A (2.5) BS03 TWZ ? GO:0000122 ... P31947 34427424
    584560 6y7t:F (2.5) BS01 peptide ? GO:0000122 ... P31947 34427424
    584561 6y7t:F (2.5) BS02 TWZ ? GO:0000122 ... P31947 34427424
    584562 6y7t:F (2.5) BS03 TWZ ? GO:0000122 ... P31947 34427424
    584563 6y7u:A (1.6) BS01 FMN 2.7.13.3 N/A B8GAY9 N/A
    584564 6y7u:B (1.6) BS01 FMN 2.7.13.3 N/A B8GAY9 N/A
    584565 6y7v:A (2.241) BS01 peptide ? GO:0000139 ... Q5ZKX9 34137369
    584566 6y7w:A (1.39) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    584567 6y7w:A (1.39) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584568 6y7w:A (1.39) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584569 6y7w:A (1.39) BS04 OFW 2.7.11.24 GO:0000077 ... P47811 32543856 MOAD: Kd=57.8uM
    BindingDB: Kd=57800nM
    584570 6y7x:A (1.45) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    584571 6y7x:A (1.45) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584572 6y7x:A (1.45) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584573 6y7x:A (1.45) BS04 OFQ 2.7.11.24 GO:0000077 ... P47811 32543856
    584574 6y7y:A (1.51) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    584575 6y7y:A (1.51) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584576 6y7y:A (1.51) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584577 6y7y:A (1.51) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584578 6y7y:A (1.51) BS05 OFQ 2.7.11.24 GO:0000077 ... P47811 32543856
    584579 6y7y:A (1.51) BS06 LOT 2.7.11.24 GO:0000077 ... P47811 32543856
    584580 6y7y:A (1.51) BS07 LOT 2.7.11.24 GO:0000077 ... P47811 32543856
    584581 6y7z:A (1.35) BS01 OG2 2.7.11.24 GO:0000077 ... P47811 N/A
    584582 6y7z:A (1.35) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 N/A
    584583 6y7z:A (1.35) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    584584 6y7z:A (1.35) BS04 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    584585 6y80:A (1.24) BS01 OFZ 2.7.11.24 GO:0000077 ... P47811 32543856
    584586 6y80:A (1.24) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    584587 6y80:A (1.24) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584588 6y80:A (1.24) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584589 6y81:A (1.54) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    584590 6y81:A (1.54) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584591 6y81:A (1.54) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584592 6y81:A (1.54) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    584593 6y81:A (1.54) BS05 OG5 2.7.11.24 GO:0000077 ... P47811 32543856 MOAD: Kd=25.1uM
    BindingDB: Kd=25100nM
    584594 6y82:A (1.44) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 N/A
    584595 6y82:A (1.44) BS02 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    584596 6y82:A (1.44) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    584597 6y82:A (1.44) BS04 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    584598 6y85:A (1.58) BS01 OG8 2.7.11.24 GO:0000077 ... P47811 N/A BindingDB: Kd=112000nM
    584599 6y85:A (1.58) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 N/A
    584600 6y85:A (1.58) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).