SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    585001 6yal:A (3.0) BS01 rna ? GO:0003676 ... G1T2G4 32268096
    585002 6yal:A (3.0) BS02 rna ? GO:0003676 ... G1T2G4 32268096
    585003 6yal:B (3.0) BS01 rna N/A GO:0000049 ... N/A 32268096
    585004 6yal:C (3.0) BS01 rna ? GO:0003735 ... G1TLT8 32268096
    585005 6yal:D (3.0) BS01 rna ? GO:0003735 ... G1TN72 32268096
    585006 6yal:E (3.0) BS01 rna N/A GO:0003723 ... N/A 32268096
    585007 6yal:F (3.0) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 32268096
    585008 6yal:G (3.0) BS01 rna ? GO:0003723 ... G1TK17 32268096
    585009 6yal:H (3.0) BS01 rna ? GO:0003723 ... U3KMN4 32268096
    585010 6yal:H (3.0) BS02 rna ? GO:0003723 ... U3KMN4 32268096
    585011 6yal:I (3.0) BS01 rna ? GO:0003735 ... A0A5K1UJS7 32268096
    585012 6yal:J (3.0) BS01 rna ? GO:0003735 ... G1SVB0 32268096
    585013 6yal:K (3.0) BS01 rna ? GO:0003735 ... G1TJW1 32268096
    585014 6yal:L (3.0) BS01 rna ? GO:0003723 ... B7NZS8 32268096
    585015 6yal:M (3.0) BS01 rna ? N/A G1TPV3 32268096
    585016 6yal:M (3.0) BS02 rna ? N/A G1TPV3 32268096
    585017 6yal:N (3.0) BS01 rna ? GO:0003735 ... G1TRM4 32268096
    585018 6yal:O (3.0) BS01 rna ? GO:0003735 ... G1SFR8 32268096
    585019 6yal:P (3.0) BS01 rna ? GO:0003735 ... G1SP51 32268096
    585020 6yal:Q (3.0) BS01 rna ? GO:0003735 ... G1T1F0 32268096
    585021 6yal:R (3.0) BS01 rna ? GO:0000028 ... G1U0Q2 32268096
    585022 6yal:R (3.0) BS02 rna ? GO:0000028 ... G1U0Q2 32268096
    585023 6yal:S (3.0) BS01 rna ? GO:0000462 ... G1SGX4 32268096
    585024 6yal:T (3.0) BS01 rna ? GO:0003735 ... G1TU13 32268096
    585025 6yal:U (3.0) BS01 rna ? GO:0003676 ... G1TPG3 32268096
    585026 6yal:U (3.0) BS02 rna ? GO:0003676 ... G1TPG3 32268096
    585027 6yal:V (3.0) BS01 rna ? GO:0000028 ... G1TN62 32268096
    585028 6yal:W (3.0) BS01 rna ? GO:0003723 ... G1SIZ2 32268096
    585029 6yal:Y (3.0) BS01 rna ? GO:0003735 ... G1TG89 32268096
    585030 6yal:Z (3.0) BS01 rna ? GO:0003735 ... G1SZ47 32268096
    585031 6yal:a (3.0) BS01 rna ? GO:0003735 ... G1TS40 32268096
    585032 6yal:b (3.0) BS01 rna ? GO:0003729 ... G1TFE8 32268096
    585033 6yal:b (3.0) BS02 rna ? GO:0003729 ... G1TFE8 32268096
    585034 6yal:c (3.0) BS01 rna ? GO:0003735 ... G1TZ76 32268096
    585035 6yal:d (3.0) BS01 rna ? GO:0000028 ... G1TIB4 32268096
    585036 6yal:d (3.0) BS02 rna ? GO:0000028 ... G1TIB4 32268096
    585037 6yal:e (3.0) BS01 rna ? GO:0002181 ... G1U7M4 32268096
    585038 6yal:f (3.0) BS01 rna ? GO:0003735 ... G1SK22 32268096
    585039 6yal:g (3.0) BS01 rna ? GO:0001891 ... G1SJB4 32268096
    585040 6yal:i (3.0) BS01 rna ? GO:0003735 ... G1T8A2 32268096
    585041 6yal:i (3.0) BS02 rna ? GO:0003735 ... G1T8A2 32268096
    585042 6yal:j (3.0) BS01 rna ? GO:0003723 ... G1SYS4 32268096
    585043 6yal:j (3.0) BS02 rna ? GO:0003723 ... G1SYS4 32268096
    585044 6yal:j (3.0) BS03 rna ? GO:0003723 ... G1SYS4 32268096
    585045 6yal:k (3.0) BS01 rna ? GO:0005524 ... G1SG72 32268096
    585046 6yal:k (3.0) BS02 SF4 ? GO:0005524 ... G1SG72 32268096
    585047 6yal:k (3.0) BS03 SF4 ? GO:0005524 ... G1SG72 32268096
    585048 6yal:k (3.0) BS04 GNP ? GO:0005524 ... G1SG72 32268096
    585049 6yal:k (3.0) BS05 GNP ? GO:0005524 ... G1SG72 32268096
    585050 6yal:n (3.0) BS01 rna ? GO:0003735 ... G1TDB3 32268096
    585051 6yam:A (3.6) BS01 rna ? GO:0003676 ... G1T2G4 32268096
    585052 6yam:A (3.6) BS02 rna ? GO:0003676 ... G1T2G4 32268096
    585053 6yam:B (3.6) BS01 rna N/A GO:0000049 ... N/A 32268096
    585054 6yam:C (3.6) BS01 rna ? GO:0003735 ... G1TLT8 32268096
    585055 6yam:D (3.6) BS01 rna ? GO:0003735 ... G1TN72 32268096
    585056 6yam:E (3.6) BS01 rna N/A GO:0003723 ... N/A 32268096
    585057 6yam:F (3.6) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 32268096
    585058 6yam:G (3.6) BS01 rna ? GO:0003723 ... G1TK17 32268096
    585059 6yam:H (3.6) BS01 rna ? GO:0003723 ... U3KMN4 32268096
    585060 6yam:H (3.6) BS02 rna ? GO:0003723 ... U3KMN4 32268096
    585061 6yam:I (3.6) BS01 rna ? GO:0003735 ... G1TM55 32268096
    585062 6yam:J (3.6) BS01 rna ? GO:0003735 ... G1SVB0 32268096
    585063 6yam:K (3.6) BS01 rna ? GO:0003735 ... G1TJW1 32268096
    585064 6yam:L (3.6) BS01 rna ? GO:0003723 ... B7NZS8 32268096
    585065 6yam:M (3.6) BS01 rna ? N/A G1T168 32268096
    585066 6yam:M (3.6) BS02 rna ? N/A G1T168 32268096
    585067 6yam:N (3.6) BS01 rna ? GO:0003735 ... G1TRM4 32268096
    585068 6yam:O (3.6) BS01 rna ? GO:0003735 ... G1SFR8 32268096
    585069 6yam:P (3.6) BS01 rna ? GO:0003735 ... G1SP51 32268096
    585070 6yam:Q (3.6) BS01 rna ? GO:0003735 ... G1T1F0 32268096
    585071 6yam:R (3.6) BS01 rna ? GO:0000028 ... G1U0Q2 32268096
    585072 6yam:R (3.6) BS02 rna ? GO:0000028 ... G1U0Q2 32268096
    585073 6yam:S (3.6) BS01 rna ? GO:0000462 ... G1SGX4 32268096
    585074 6yam:T (3.6) BS01 rna ? GO:0003735 ... G1TU13 32268096
    585075 6yam:U (3.6) BS01 rna ? GO:0003676 ... G1TPG3 32268096
    585076 6yam:U (3.6) BS02 rna ? GO:0003676 ... G1TPG3 32268096
    585077 6yam:V (3.6) BS01 rna ? GO:0000028 ... G1TN62 32268096
    585078 6yam:W (3.6) BS01 rna ? GO:0003723 ... G1SIZ2 32268096
    585079 6yam:Y (3.6) BS01 rna ? GO:0003735 ... G1TG89 32268096
    585080 6yam:Z (3.6) BS01 rna ? GO:0003735 ... G1SZ47 32268096
    585081 6yam:a (3.6) BS01 rna ? GO:0003735 ... G1TS40 32268096
    585082 6yam:b (3.6) BS01 rna ? GO:0003729 ... G1TFE8 32268096
    585083 6yam:b (3.6) BS02 rna ? GO:0003729 ... G1TFE8 32268096
    585084 6yam:c (3.6) BS01 rna ? GO:0003735 ... G1TZ76 32268096
    585085 6yam:d (3.6) BS01 rna ? GO:0000028 ... G1TIB4 32268096
    585086 6yam:d (3.6) BS02 rna ? GO:0000028 ... G1TIB4 32268096
    585087 6yam:e (3.6) BS01 rna ? GO:0002181 ... G1U7M4 32268096
    585088 6yam:f (3.6) BS01 rna ? GO:0003735 ... G1SK22 32268096
    585089 6yam:g (3.6) BS01 rna ? GO:0001891 ... G1SJB4 32268096
    585090 6yam:i (3.6) BS01 rna ? GO:0003735 ... G1T8A2 32268096
    585091 6yam:i (3.6) BS02 rna ? GO:0003735 ... G1T8A2 32268096
    585092 6yam:j (3.6) BS01 rna N/A GO:0003723 ... N/A 32268096
    585093 6yam:j (3.6) BS02 rna N/A GO:0003723 ... N/A 32268096
    585094 6yam:j (3.6) BS03 rna N/A GO:0003723 ... N/A 32268096
    585095 6yam:k (3.6) BS01 rna N/A GO:0005524 ... N/A 32268096
    585096 6yam:k (3.6) BS02 SF4 N/A GO:0005524 ... N/A 32268096
    585097 6yam:k (3.6) BS03 SF4 N/A GO:0005524 ... N/A 32268096
    585098 6yam:k (3.6) BS04 GNP N/A GO:0005524 ... N/A 32268096
    585099 6yam:k (3.6) BS05 GNP N/A GO:0005524 ... N/A 32268096
    585100 6yam:n (3.6) BS01 rna ? N/A G1TDB3 32268096
    585101 6yan:A (3.48) BS01 rna ? GO:0003676 ... G1T2G4 32268096
    585102 6yan:B (3.48) BS01 rna N/A GO:0000049 ... N/A 32268096
    585103 6yan:C (3.48) BS01 rna ? GO:0003735 ... G1TLT8 32268096
    585104 6yan:D (3.48) BS01 rna ? GO:0003735 ... G1TN72 32268096
    585105 6yan:E (3.48) BS01 rna N/A GO:0003723 ... N/A 32268096
    585106 6yan:E (3.48) BS02 rna N/A GO:0003723 ... N/A 32268096
    585107 6yan:F (3.48) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 32268096
    585108 6yan:F (3.48) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 32268096
    585109 6yan:G (3.48) BS01 rna ? GO:0003723 ... G1TK17 32268096
    585110 6yan:H (3.48) BS01 rna ? GO:0003723 ... G1TFM5 32268096
    585111 6yan:H (3.48) BS02 rna ? GO:0003723 ... G1TFM5 32268096
    585112 6yan:I (3.48) BS01 rna ? GO:0003735 ... A0A5K1UJS7 32268096
    585113 6yan:J (3.48) BS01 rna ? GO:0003735 ... G1SVB0 32268096
    585114 6yan:K (3.48) BS01 rna ? GO:0003735 ... G1TJW1 32268096
    585115 6yan:L (3.48) BS01 rna ? GO:0003723 ... B7NZS8 32268096
    585116 6yan:M (3.48) BS01 rna ? N/A G1TPV3 32268096
    585117 6yan:N (3.48) BS01 rna ? GO:0003735 ... G1TRM4 32268096
    585118 6yan:O (3.48) BS01 rna ? GO:0003735 ... G1SFR8 32268096
    585119 6yan:P (3.48) BS01 rna ? GO:0003735 ... G1SP51 32268096
    585120 6yan:Q (3.48) BS01 rna ? GO:0003735 ... G1T1F0 32268096
    585121 6yan:R (3.48) BS01 rna ? GO:0000028 ... G1U0Q2 32268096
    585122 6yan:S (3.48) BS01 rna ? GO:0000462 ... G1SGX4 32268096
    585123 6yan:T (3.48) BS01 rna ? GO:0003735 ... G1TU13 32268096
    585124 6yan:U (3.48) BS01 rna ? GO:0003676 ... G1TPG3 32268096
    585125 6yan:V (3.48) BS01 rna ? GO:0000028 ... G1TN62 32268096
    585126 6yan:W (3.48) BS01 rna ? GO:0003723 ... G1SIZ2 32268096
    585127 6yan:Y (3.48) BS01 rna ? GO:0003735 ... G1TG89 32268096
    585128 6yan:Z (3.48) BS01 rna ? GO:0003735 ... G1SZ47 32268096
    585129 6yan:a (3.48) BS01 rna ? GO:0003735 ... G1TS40 32268096
    585130 6yan:b (3.48) BS01 rna ? GO:0003735 ... G1TFE8 32268096
    585131 6yan:b (3.48) BS02 rna ? GO:0003735 ... G1TFE8 32268096
    585132 6yan:c (3.48) BS01 rna ? GO:0003735 ... G1TZ76 32268096
    585133 6yan:d (3.48) BS01 rna ? GO:0000028 ... G1TIB4 32268096
    585134 6yan:e (3.48) BS01 rna ? GO:0002181 ... G1U7M4 32268096
    585135 6yan:f (3.48) BS01 rna ? GO:0003735 ... G1SK22 32268096
    585136 6yan:g (3.48) BS01 rna ? GO:0001891 ... G1SJB4 32268096
    585137 6yan:h (3.48) BS01 rna ? N/A G1TDB3 32268096
    585138 6yan:i (3.48) BS01 rna ? GO:0003735 ... G1T8A2 32268096
    585139 6yao:A (2.0) BS01 FAD 1.5.99.12 GO:0003824 ... E3T1W8 32945834
    585140 6yao:A (2.0) BS02 OJ2 1.5.99.12 GO:0003824 ... E3T1W8 32945834 MOAD: ic50=1.5uM
    585141 6yap:A (1.9) BS01 FAD 1.5.99.12 GO:0003824 ... E3T1W8 32945834
    585142 6yap:A (1.9) BS02 OHZ 1.5.99.12 GO:0003824 ... E3T1W8 32945834 MOAD: ic50=0.37uM
    585143 6yaq:A (1.95) BS01 OHZ 1.5.99.12 GO:0000166 ... A0A1D6QQD6 32945834 MOAD: ic50=0.059uM
    585144 6yaq:A (1.95) BS02 FAD 1.5.99.12 GO:0000166 ... A0A1D6QQD6 32945834
    585145 6yar:A (1.9) BS01 peptide ? GO:0005524 ... P0DP92 33563593
    585146 6yar:A (1.9) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    585147 6yar:A (1.9) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    585148 6yar:B (1.9) BS01 peptide ? GO:0005524 ... P0DP92 33563593
    585149 6yar:B (1.9) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    585150 6yar:B (1.9) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    585151 6yat:A (2.58) BS01 3FX 2.7.11.1 GO:0004672 ... Q13043 34807584
    585152 6yat:A (2.58) BS02 OJ5 2.7.11.1 GO:0004672 ... Q13043 34807584
    585153 6yat:B (2.58) BS01 OJ5 2.7.11.1 GO:0004672 ... Q13043 34807584
    585154 6yau:A (1.397) BS01 CA ? N/A P07306 33344141
    585155 6yau:A (1.397) BS02 CA ? N/A P07306 33344141
    585156 6yau:A (1.397) BS03 CA ? N/A P07306 33344141
    585157 6yau:A (1.397) BS04 OJB ? N/A P07306 33344141
    585158 6yav:A (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    585159 6yav:B (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    585160 6yav:C (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    585161 6yav:D (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    585162 6yav:E (1.65) BS01 FES ? GO:0005737 ... Q44501 N/A
    585163 6yav:E (1.65) BS02 MG ? GO:0005737 ... Q44501 N/A
    585164 6yaw:A (2.19) BS01 P9H 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 32822468
    585165 6yaw:A (2.19) BS02 P9H 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 32822468
    585166 6yaw:B (2.19) BS01 P9H 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 32822468
    585167 6yaw:B (2.19) BS02 P9H 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 32822468
    585168 6yay:A (2.09) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    585169 6yay:A (2.09) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    585170 6yay:B (2.09) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    585171 6yay:B (2.09) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    585172 6yb3:A (1.59) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    585173 6yb3:A (1.59) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    585174 6yb3:B (1.59) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    585175 6yb3:B (1.59) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    585176 6yb4:AAA (1.85) BS01 OJH 3.6.1.- N/A Q6PL18 32321240 BindingDB: IC50=100nM
    585177 6yb5:A (1.59) BS01 peptide ? GO:0005524 ... P0DP92 33563593
    585178 6yb5:A (1.59) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    585179 6yb5:A (1.59) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    585180 6yb5:B (1.59) BS01 peptide ? GO:0005524 ... P0DP92 33563593
    585181 6yb5:B (1.59) BS02 peptide ? GO:0005524 ... P0DP92 33563593
    585182 6yb5:B (1.59) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    585183 6yb5:B (1.59) BS04 ATP ? GO:0005524 ... P0DP92 33563593
    585184 6yb6:H (1.33) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    585185 6yb6:H (1.33) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    585186 6yb6:H (1.33) BS03 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    585187 6yb6:H (1.33) BS04 PRO 3.4.21.5 GO:0004252 ... P00734 N/A
    585188 6yb6:H (1.33) BS05 OJK 3.4.21.5 GO:0004252 ... P00734 N/A
    585189 6yb8:A (2.36) BS01 C2R 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585190 6yb8:A (2.36) BS02 OK8 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585191 6yb8:A (2.36) BS03 IMD 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585192 6yb8:B (2.36) BS01 C2R 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585193 6yb8:B (2.36) BS02 C2R 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585194 6yb9:A (2.406) BS01 ANP 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585195 6yb9:A (2.406) BS02 OK8 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585196 6yb9:A (2.406) BS03 MG 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585197 6yb9:B (2.406) BS01 ANP 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585198 6yb9:B (2.406) BS02 OK8 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585199 6yb9:B (2.406) BS03 MG 4.1.1.21
    6.3.2.6
    GO:0004638 ... P22234 32571877
    585200 6yba:A (4.0) BS01 peptide ? GO:0005198 ... P11820 33627423

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).