SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    585401 6yca:B (2.9) BS01 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585402 6yca:B (2.9) BS02 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585403 6yca:C (2.9) BS01 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585404 6yca:C (2.9) BS02 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585405 6yca:D (2.9) BS01 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585406 6yca:D (2.9) BS02 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585407 6yca:E (2.9) BS01 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585408 6yca:E (2.9) BS02 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585409 6yca:F (2.9) BS01 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585410 6yca:F (2.9) BS02 ACO 2.3.1.- GO:0008080 ... A0A418LDP6 32860271
    585411 6ycc:A (1.3) BS01 E64 3.4.22.31 GO:0006508 ... P80884 33177555
    585412 6ycc:B (1.3) BS01 E64 3.4.22.31 GO:0006508 ... P80884 33177555
    585413 6ycd:A (1.35) BS01 TCK 3.4.22.31 GO:0006508 ... P80884 33177555
    585414 6ycd:B (1.35) BS01 TCK 3.4.22.31 GO:0006508 ... P80884 33177555
    585415 6ycf:A (1.85) BS01 E64 ? GO:0006508 ... A0A199VSS3 33177555
    585416 6ycf:B (1.85) BS01 E64 ? GO:0006508 ... A0A199VSS3 33177555
    585417 6ycg:B (1.45) BS01 FUC ? GO:0006508 ... A0A199VSS3 33177555
    585418 6ycg:B (1.45) BS02 TCK ? GO:0006508 ... A0A199VSS3 33177555
    585419 6ych:A (1.88) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585420 6ych:A (1.88) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585421 6yci:A (1.8) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585422 6yci:A (1.8) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585423 6ycj:A (1.64) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585424 6ycj:A (1.64) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585425 6yck:A (1.8) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585426 6yck:A (1.8) BS02 V55 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585427 6ycl:A (1.7) BS01 V55 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585428 6ycl:A (1.7) BS02 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585429 6ycm:A (1.6) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585430 6ycm:A (1.6) BS02 V55 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585431 6ycn:A (1.83) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585432 6ycn:A (1.83) BS02 OKE 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585433 6yco:A (1.8) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585434 6yco:A (1.8) BS02 OKE 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585435 6ycp:A (1.8) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585436 6ycp:A (1.8) BS02 OKE 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585437 6ycq:A (1.65) BS01 dna ? GO:0003677 ... Q8L7G0 32929017
    585438 6ycq:A (1.65) BS02 dna ? GO:0003677 ... Q8L7G0 32929017
    585439 6ycq:B (1.65) BS01 dna ? GO:0003677 ... Q8L7G0 32929017
    585440 6ycq:B (1.65) BS02 dna ? GO:0003677 ... Q8L7G0 32929017
    585441 6ycr:A (1.54) BS01 peptide ? N/A Q9NZQ7 N/A
    585442 6ycs:A (3.05) BS01 dna ? GO:0003677 ... P53999 32202774
    585443 6ycs:B (3.05) BS01 dna ? GO:0003677 ... P53999 32202774
    585444 6ycs:B (3.05) BS02 rna ? GO:0003677 ... P53999 32202774
    585445 6ycs:C (3.05) BS01 dna ? GO:0003677 ... P53999 32202774
    585446 6ycs:C (3.05) BS02 rna ? GO:0003677 ... P53999 32202774
    585447 6ycs:D (3.05) BS01 rna ? GO:0003677 ... P53999 32202774
    585448 6yct:A (2.39) BS01 V55 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585449 6yct:A (2.39) BS02 HEC 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    585450 6ycu:A (1.35) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    585451 6ycu:A (1.35) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    585452 6ycu:A (1.35) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    585453 6ycu:A (1.35) BS04 OKZ 2.7.11.24 GO:0000077 ... P47811 32543856
    585454 6ycw:A (1.34) BS01 SB4 2.7.11.24 GO:0000077 ... P47811 32543856
    585455 6ycw:A (1.34) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    585456 6ycw:A (1.34) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    585457 6ycw:A (1.34) BS04 OL8 2.7.11.24 GO:0000077 ... P47811 32543856
    585458 6ycx:A (3.99) BS01 ADP ? GO:0000146 ... Q8IDR3 33046215
    585459 6ycx:A (3.99) BS02 MG ? GO:0000146 ... Q8IDR3 33046215
    585460 6ycx:B (3.99) BS01 ADP ? GO:0000146 ... Q8IDR3 33046215
    585461 6ycy:A (2.55) BS01 MG ? GO:0000146 ... Q8IDR3 33046215
    585462 6ycy:A (2.55) BS02 ADP ? GO:0000146 ... Q8IDR3 33046215
    585463 6ycz:A (3.27) BS01 MG ? GO:0000146 ... Q8IDR3 33046215
    585464 6ycz:A (3.27) BS02 ADP ? GO:0000146 ... Q8IDR3 33046215
    585465 6yd0:D (1.95) BS01 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    585466 6yd0:D (1.95) BS02 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    585467 6yd1:A (1.7) BS01 GDP ? GO:0003924 ... Q2FZ89 33908781
    585468 6yd1:A (1.7) BS02 OLQ ? GO:0003924 ... Q2FZ89 33908781
    585469 6yd2:A (1.8) BS01 peptide 3.4.21.75 GO:0004252 ... P09958 33732412
    585470 6yd2:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585471 6yd2:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585472 6yd2:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585473 6yd3:A (2.0) BS01 peptide 3.4.21.75 GO:0004252 ... P09958 33732412
    585474 6yd3:A (2.0) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585475 6yd3:A (2.0) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585476 6yd3:A (2.0) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585477 6yd4:A (1.7) BS01 peptide 3.4.21.75 GO:0004252 ... P09958 33732412
    585478 6yd4:A (1.7) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585479 6yd4:A (1.7) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585480 6yd4:A (1.7) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585481 6yd5:A (1.55) BS01 GDP ? GO:0003924 ... Q2FZ89 33908781
    585482 6yd5:A (1.55) BS02 MB3 ? GO:0003924 ... Q2FZ89 33908781
    585483 6yd5:A (1.55) BS03 OM8 ? GO:0003924 ... Q2FZ89 33908781
    585484 6yd6:A (1.7) BS01 GDP ? GO:0003924 ... Q2FZ89 33908781
    585485 6yd6:A (1.7) BS02 OMW ? GO:0003924 ... Q2FZ89 33908781
    585486 6yd6:A (1.7) BS03 MB3 ? GO:0003924 ... Q2FZ89 33908781
    585487 6yd7:A (1.8) BS01 peptide 3.4.21.75 GO:0004252 ... P09958 33732412
    585488 6yd7:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585489 6yd7:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585490 6yd7:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    585491 6yd9:A (1.6) BS01 ON2 5.6.2.2 GO:0003677 ... P0AES6 33329764 MOAD: ic50=110nM
    585492 6ydb:A (2.801) BS01 GGF ? GO:0002218 ... Q86WV6 33616279
    585493 6ydc:A (2.0) BS01 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585494 6ydc:A (2.0) BS02 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585495 6ydc:A (2.0) BS03 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585496 6ydc:A (2.0) BS04 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585497 6ydc:B (2.0) BS01 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585498 6ydc:B (2.0) BS02 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585499 6ydc:B (2.0) BS03 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585500 6ydc:B (2.0) BS04 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585501 6ydc:B (2.0) BS05 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585502 6ydc:C (2.0) BS01 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585503 6ydc:C (2.0) BS02 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585504 6ydc:C (2.0) BS03 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585505 6ydc:D (2.0) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585506 6ydd:A (2.8) BS01 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585507 6ydd:A (2.8) BS02 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585508 6ydd:A (2.8) BS03 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585509 6ydd:B (2.8) BS01 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585510 6ydd:B (2.8) BS02 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585511 6ydd:B (2.8) BS03 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585512 6yde:A (2.2) BS01 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585513 6yde:A (2.2) BS02 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585514 6yde:A (2.2) BS03 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585515 6yde:A (2.2) BS04 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585516 6yde:A (2.2) BS05 BGC 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585517 6yde:A (2.2) BS06 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585518 6ydf:A (2.12) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585519 6ydf:B (2.12) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 32818374
    585520 6ydg:A (1.9) BS01 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 32818374
    585521 6ydg:A (1.9) BS02 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 32818374
    585522 6ydg:A (1.9) BS03 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 32818374
    585523 6ydg:A (1.9) BS04 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 32818374
    585524 6ydg:A (1.9) BS05 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 32818374
    585525 6ydi:D (1.95) BS01 FE2 1.14.13.25 GO:0004497 ... P27353 N/A
    585526 6ydi:D (1.95) BS02 FE2 1.14.13.25 GO:0004497 ... P27353 N/A
    585527 6ydj:A (1.04) BS01 BG6 5.4.2.6 GO:0000287 ... P71447 33139716
    585528 6ydj:A (1.04) BS02 MGF 5.4.2.6 GO:0000287 ... P71447 33139716
    585529 6ydj:A (1.04) BS03 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    585530 6ydj:A (1.04) BS04 PDO 5.4.2.6 GO:0000287 ... P71447 33139716
    585531 6ydk:A (2.02) BS01 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    585532 6ydl:A (1.52) BS01 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    585533 6ydm:A (2.1) BS01 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    585534 6ydm:A (2.1) BS02 PDO 5.4.2.6 GO:0000287 ... P71447 33139716
    585535 6ydm:B (2.1) BS01 MG 5.4.2.6 GO:0000287 ... P71447 33139716
    585536 6ydp:AB (3.0) BS01 rna ? GO:0003735 ... F1S001 32602580
    585537 6ydp:AB (3.0) BS02 MG ? GO:0003735 ... F1S001 32602580
    585538 6ydp:AC (3.0) BS01 rna ? GO:0005739 ... A0A287ANU4 32602580
    585539 6ydp:AE (3.0) BS01 rna ? GO:0003723 ... F1SU66 32602580
    585540 6ydp:AF (3.0) BS01 rna N/A GO:0003735 ... N/A 32602580
    585541 6ydp:AG (3.0) BS01 rna ? GO:0000028 ... A0A286ZJ25 32602580
    585542 6ydp:AG (3.0) BS02 rna ? GO:0000028 ... A0A286ZJ25 32602580
    585543 6ydp:AI (3.0) BS01 rna ? GO:0003723 ... I3LU08 32602580
    585544 6ydp:AI (3.0) BS02 rna ? GO:0003723 ... I3LU08 32602580
    585545 6ydp:AJ (3.0) BS01 rna ? GO:0005739 ... F1RUU2 32602580
    585546 6ydp:AK (3.0) BS01 rna ? GO:0003735 ... A0A286ZJJ6 32602580
    585547 6ydp:AL (3.0) BS01 rna ? GO:0003735 ... A0A0M3KL52 32602580
    585548 6ydp:AN (3.0) BS01 rna ? GO:0003735 ... A0A0M3KL53 32602580
    585549 6ydp:AO (3.0) BS01 rna ? GO:0003735 ... A0A287BMP0 32602580
    585550 6ydp:AP (3.0) BS01 rna ? GO:0003735 ... A0A480JTD7 32602580
    585551 6ydp:AQ (3.0) BS01 rna ? GO:0003735 ... A0A8D1UDM1 32602580
    585552 6ydp:AR (3.0) BS01 rna ? GO:0003735 ... A0A0M3KL54 32602580
    585553 6ydp:AR (3.0) BS02 ZN ? GO:0003735 ... A0A0M3KL54 32602580
    585554 6ydp:AU (3.0) BS01 rna ? GO:0003735 ... A0A286ZNB3 32602580
    585555 6ydp:Ab (3.0) BS01 rna ? GO:0003735 ... A0A287AEW3 32602580
    585556 6ydp:Ac (3.0) BS01 rna ? GO:0003735 ... A0A0M3KL55 32602580
    585557 6ydp:Ac (3.0) BS02 ZN ? GO:0003735 ... A0A0M3KL55 32602580
    585558 6ydp:Ad (3.0) BS01 rna ? GO:0005763 ... A0A287AY01 32602580
    585559 6ydp:Ae (3.0) BS01 rna ? GO:0005739 ... I3LK09 32602580
    585560 6ydp:Ag (3.0) BS01 rna ? GO:0005654 ... A0A8D1XNL0 32602580
    585561 6ydp:Ag (3.0) BS02 GTP ? GO:0005654 ... A0A8D1XNL0 32602580
    585562 6ydp:Ah (3.0) BS01 peptide ? GO:0003735 ... F1RME2 32602580
    585563 6ydp:Ai (3.0) BS01 rna ? N/A A0A4X1V2H3 32602580
    585564 6ydp:Ai (3.0) BS02 peptide ? N/A A0A4X1V2H3 32602580
    585565 6ydp:Aj (3.0) BS01 rna ? GO:0003735 ... A0A287AVS9 32602580
    585566 6ydp:Am (3.0) BS01 rna ? GO:0005739 ... A0A4X1SZV4 32602580
    585567 6ydp:An (3.0) BS01 rna ? GO:0005634 ... A0A8D2A802 32602580
    585568 6ydp:An (3.0) BS02 rna ? GO:0005634 ... A0A8D2A802 32602580
    585569 6ydp:Ap (3.0) BS01 rna ? GO:0003735 ... Q767K8 32602580
    585570 6ydp:Ap (3.0) BS02 ZN ? GO:0003735 ... Q767K8 32602580
    585571 6ydp:B0 (3.0) BS01 rna ? GO:0003735 ... A0A4X1U0F6 32602580
    585572 6ydp:B1 (3.0) BS01 rna ? GO:0003735 ... A0A286ZTW8 32602580
    585573 6ydp:B2 (3.0) BS01 rna ? GO:0003735 ... F1SGC7 32602580
    585574 6ydp:B3 (3.0) BS01 rna ? GO:0003735 ... A0A8D1MIP3 32602580
    585575 6ydp:B4 (3.0) BS01 rna ? GO:0003735 ... A0A4X1ULI6 32602580
    585576 6ydp:B5 (3.0) BS01 rna ? GO:0003735 ... I3LTC4 32602580
    585577 6ydp:B5 (3.0) BS02 ZN ? GO:0003735 ... I3LTC4 32602580
    585578 6ydp:B6 (3.0) BS01 rna ? GO:0003735 ... A0A4X1TLP9 32602580
    585579 6ydp:B7 (3.0) BS01 rna ? GO:0003735 ... A0A4X1UFR4 32602580
    585580 6ydp:B8 (3.0) BS01 rna ? GO:0003735 ... F1SVC5 32602580
    585581 6ydp:B9 (3.0) BS01 rna ? GO:0003735 ... A0A287A731 32602580
    585582 6ydp:B9 (3.0) BS02 ZN ? GO:0003735 ... A0A287A731 32602580
    585583 6ydp:BC (3.0) BS01 rna ? GO:0003723 ... Q96RP9 32602580
    585584 6ydp:BC (3.0) BS02 rna ? GO:0003723 ... Q96RP9 32602580
    585585 6ydp:BC (3.0) BS03 GNP ? GO:0003723 ... Q96RP9 32602580
    585586 6ydp:BC (3.0) BS04 MG ? GO:0003723 ... Q96RP9 32602580
    585587 6ydp:BD (3.0) BS01 rna ? GO:0003735 ... F1RRN2 32602580
    585588 6ydp:BD (3.0) BS02 MG ? GO:0003735 ... F1RRN2 32602580
    585589 6ydp:BE (3.0) BS01 rna ? GO:0003735 ... A0A140UHW4 32602580
    585590 6ydp:BF (3.0) BS01 rna ? GO:0003735 ... A0A287B9C4 32602580
    585591 6ydp:BI (3.0) BS01 rna ? GO:0003735 ... I3LR45 32602580
    585592 6ydp:BJ (3.0) BS01 peptide ? GO:0005840 ... F1RWJ0 32602580
    585593 6ydp:BJ (3.0) BS02 peptide ? GO:0005840 ... F1RWJ0 32602580
    585594 6ydp:BJ (3.0) BS03 peptide ? GO:0005840 ... F1RWJ0 32602580
    585595 6ydp:BJ (3.0) BS04 peptide ? GO:0005840 ... F1RWJ0 32602580
    585596 6ydp:BJ (3.0) BS05 peptide ? GO:0005840 ... F1RWJ0 32602580
    585597 6ydp:BJ (3.0) BS06 rna ? GO:0005840 ... F1RWJ0 32602580
    585598 6ydp:BK (3.0) BS01 rna ? GO:0003735 ... F1RU54 32602580
    585599 6ydp:BN (3.0) BS01 rna ? GO:0003729 ... K7GP19 32602580
    585600 6ydp:BO (3.0) BS01 rna ? GO:0003735 ... A0A287BMZ6 32602580

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).