SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    58401 1vqo:K (2.2) BS01 rna ? GO:0003735 ... P22450 16285925
    58402 1vqo:L (2.2) BS01 rna ? GO:0003735 ... P12737 16285925
    58403 1vqo:M (2.2) BS01 rna ? GO:0002181 ... P60618 16285925
    58404 1vqo:N (2.2) BS01 rna ? GO:0000027 ... P14123 16285925
    58405 1vqo:N (2.2) BS02 rna ? GO:0000027 ... P14123 16285925
    58406 1vqo:O (2.2) BS01 rna ? GO:0003723 ... P12733 16285925
    58407 1vqo:P (2.2) BS01 rna ? GO:0003723 ... P14119 16285925
    58408 1vqo:Q (2.2) BS01 rna ? GO:0003735 ... P12734 16285925
    58409 1vqo:Q (2.2) BS02 rna ? GO:0003735 ... P12734 16285925
    58410 1vqo:R (2.2) BS01 rna ? GO:0002181 ... P10970 16285925
    58411 1vqo:S (2.2) BS01 rna ? GO:0003735 ... P12732 16285925
    58412 1vqo:T (2.2) BS01 rna ? GO:0003723 ... P10972 16285925
    58413 1vqo:T (2.2) BS02 MG ? GO:0003723 ... P10972 16285925
    58414 1vqo:U (2.2) BS01 rna ? GO:0003735 ... P14116 16285925
    58415 1vqo:V (2.2) BS01 rna ? GO:0003735 ... P10971 16285925
    58416 1vqo:W (2.2) BS01 rna ? GO:0000463 ... P14121 16285925
    58417 1vqo:W (2.2) BS02 rna ? GO:0000463 ... P14121 16285925
    58418 1vqo:X (2.2) BS01 rna ? GO:0002181 ... P18138 16285925
    58419 1vqo:Y (2.2) BS01 rna ? GO:0000166 ... P12736 16285925
    58420 1vqo:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    58421 1vqo:Z (2.2) BS01 rna ? GO:0003735 ... P60619 16285925
    58422 1vqp:1 (2.25) BS01 rna ? GO:0003723 ... P32410 16285925
    58423 1vqp:2 (2.25) BS01 rna ? GO:0003735 ... P22452 16285925
    58424 1vqp:3 (2.25) BS01 rna ? GO:0003735 ... P32411 16285925
    58425 1vqp:A (2.25) BS01 rna ? GO:0002181 ... P20276 16285925
    58426 1vqp:A (2.25) BS02 MG ? GO:0002181 ... P20276 16285925
    58427 1vqp:A (2.25) BS03 MG ? GO:0002181 ... P20276 16285925
    58428 1vqp:B (2.25) BS01 rna ? GO:0003723 ... P20279 16285925
    58429 1vqp:C (2.25) BS01 rna ? GO:0003735 ... P12735 16285925
    58430 1vqp:D (2.25) BS01 rna ? GO:0000049 ... P14124 16285925
    58431 1vqp:D (2.25) BS02 rna ? GO:0000049 ... P14124 16285925
    58432 1vqp:E (2.25) BS01 rna ? GO:0002181 ... P14135 16285925
    58433 1vqp:F (2.25) BS01 rna ? GO:0001682 ... P12743 16285925
    58434 1vqp:H (2.25) BS01 rna ? GO:0003735 ... P60617 16285925
    58435 1vqp:I (2.25) BS01 rna ? GO:0003735 ... P14122 16285925
    58436 1vqp:J (2.25) BS01 rna ? GO:0003729 ... P29198 16285925
    58437 1vqp:K (2.25) BS01 rna ? GO:0003735 ... P22450 16285925
    58438 1vqp:L (2.25) BS01 rna ? GO:0003735 ... P12737 16285925
    58439 1vqp:M (2.25) BS01 rna ? GO:0002181 ... P60618 16285925
    58440 1vqp:N (2.25) BS01 rna ? GO:0000027 ... P14123 16285925
    58441 1vqp:N (2.25) BS02 rna ? GO:0000027 ... P14123 16285925
    58442 1vqp:O (2.25) BS01 rna ? GO:0003723 ... P12733 16285925
    58443 1vqp:P (2.25) BS01 rna ? GO:0003723 ... P14119 16285925
    58444 1vqp:Q (2.25) BS01 rna ? GO:0003735 ... P12734 16285925
    58445 1vqp:Q (2.25) BS02 rna ? GO:0003735 ... P12734 16285925
    58446 1vqp:R (2.25) BS01 rna ? GO:0002181 ... P10970 16285925
    58447 1vqp:S (2.25) BS01 rna ? GO:0003735 ... P12732 16285925
    58448 1vqp:T (2.25) BS01 rna ? GO:0003723 ... P10972 16285925
    58449 1vqp:T (2.25) BS02 MG ? GO:0003723 ... P10972 16285925
    58450 1vqp:U (2.25) BS01 rna ? GO:0003735 ... P14116 16285925
    58451 1vqp:V (2.25) BS01 rna ? GO:0003735 ... P10971 16285925
    58452 1vqp:W (2.25) BS01 rna ? GO:0000463 ... P14121 16285925
    58453 1vqp:W (2.25) BS02 rna ? GO:0000463 ... P14121 16285925
    58454 1vqp:X (2.25) BS01 rna ? GO:0002181 ... P18138 16285925
    58455 1vqp:Y (2.25) BS01 rna ? GO:0000166 ... P12736 16285925
    58456 1vqp:Y (2.25) BS02 MG ? GO:0000166 ... P12736 16285925
    58457 1vqp:Z (2.25) BS01 rna ? GO:0003735 ... P60619 16285925
    58458 1vqw:A (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    58459 1vqw:B (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    58460 1vr0:A (2.49) BS01 MG 3.1.3.71 GO:0000287 ... Q97E82 16927339
    58461 1vr0:A (2.49) BS02 3SL 3.1.3.71 GO:0000287 ... Q97E82 16927339
    58462 1vr0:B (2.49) BS01 MG 3.1.3.71 GO:0000287 ... Q97E82 16927339
    58463 1vr0:B (2.49) BS02 3SL 3.1.3.71 GO:0000287 ... Q97E82 16927339
    58464 1vr0:C (2.49) BS01 3SL 3.1.3.71 GO:0000287 ... Q97E82 16927339
    58465 1vr1:H (1.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10543954
    58466 1vr1:H (1.9) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 10543954
    58467 1vr8:A (1.75) BS01 AZI ? N/A Q9X1V7 16948158
    58468 1vrb:A (2.6) BS01 FE ? N/A P46327 N/A
    58469 1vrb:B (2.6) BS01 FE ? N/A P46327 N/A
    58470 1vrb:C (2.6) BS01 FE ? N/A P46327 N/A
    58471 1vrb:D (2.6) BS01 FE ? N/A P46327 N/A
    58472 1vrc:A (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    58473 1vrc:B (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    58474 1vrc:C (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    58475 1vrc:D (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    58476 1vre:A (-1.00) BS01 HEM ? GO:0019825 ... P15447 9692983
    58477 1vrf:A (-1.00) BS01 HEM ? GO:0019825 ... P15447 9692983
    58478 1vrg:A (2.3) BS01 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58479 1vrg:B (2.3) BS01 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58480 1vrg:B (2.3) BS02 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58481 1vrg:C (2.3) BS01 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58482 1vrg:C (2.3) BS02 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58483 1vrg:D (2.3) BS01 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58484 1vrg:D (2.3) BS02 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58485 1vrg:E (2.3) BS01 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58486 1vrg:E (2.3) BS02 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58487 1vrg:F (2.3) BS01 BCT 6.4.1.2 GO:0003989 ... Q9WZH5 N/A
    58488 1vrh:1 (3.0) BS01 SD8 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03303 8648640
    58489 1vrk:A (1.9) BS01 peptide N/A GO:0005509 ... N/A 10194305
    58490 1vrk:A (1.9) BS02 CA N/A GO:0005509 ... N/A 10194305
    58491 1vrk:A (1.9) BS03 CA N/A GO:0005509 ... N/A 10194305
    58492 1vrk:A (1.9) BS04 CA N/A GO:0005509 ... N/A 10194305
    58493 1vrk:A (1.9) BS05 CA N/A GO:0005509 ... N/A 10194305
    58494 1vrl:A (2.5) BS01 dna 3.2.2.31 GO:0000701 ... P83847 14961129
    58495 1vrl:A (2.5) BS02 dna 3.2.2.31 GO:0000701 ... P83847 14961129
    58496 1vrl:A (2.5) BS03 CA 3.2.2.31 GO:0000701 ... P83847 14961129
    58497 1vrl:A (2.5) BS04 SF4 3.2.2.31 GO:0000701 ... P83847 14961129
    58498 1vrl:A (2.5) BS05 ADE 3.2.2.31 GO:0000701 ... P83847 14961129
    58499 1vrn:C (2.2) BS01 HEC ? GO:0005506 ... P07173 15858271
    58500 1vrn:C (2.2) BS02 HEC ? GO:0005506 ... P07173 15858271
    58501 1vrn:C (2.2) BS03 HEC ? GO:0005506 ... P07173 15858271
    58502 1vrn:C (2.2) BS04 HEC ? GO:0005506 ... P07173 15858271
    58503 1vrn:L (2.2) BS01 BCB ? GO:0009772 ... P06009 15858271
    58504 1vrn:L (2.2) BS02 BCB ? GO:0009772 ... P06009 15858271
    58505 1vrn:L (2.2) BS03 BPB ? GO:0009772 ... P06009 15858271
    58506 1vrn:L (2.2) BS04 UQ7 ? GO:0009772 ... P06009 15858271
    58507 1vrn:L (2.2) BS05 FE2 ? GO:0009772 ... P06009 15858271
    58508 1vrn:L (2.2) BS06 BCB ? GO:0009772 ... P06009 15858271
    58509 1vrn:L (2.2) BS07 BPB ? GO:0009772 ... P06009 15858271
    58510 1vrn:L (2.2) BS08 MQ9 ? GO:0009772 ... P06009 15858271
    58511 1vrn:M (2.2) BS01 BCB ? GO:0009772 ... P06010 15858271
    58512 1vrn:M (2.2) BS02 BPB ? GO:0009772 ... P06010 15858271
    58513 1vrn:M (2.2) BS03 FE2 ? GO:0009772 ... P06010 15858271
    58514 1vrn:M (2.2) BS04 BCB ? GO:0009772 ... P06010 15858271
    58515 1vrn:M (2.2) BS05 BCB ? GO:0009772 ... P06010 15858271
    58516 1vrn:M (2.2) BS06 BPB ? GO:0009772 ... P06010 15858271
    58517 1vrn:M (2.2) BS07 MQ9 ? GO:0009772 ... P06010 15858271
    58518 1vrn:M (2.2) BS08 NS5 ? GO:0009772 ... P06010 15858271
    58519 1vrp:A (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    58520 1vrp:B (2.1) BS01 NO3 2.7.3.2 GO:0003824 ... P04414 12437342
    58521 1vrp:B (2.1) BS02 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    58522 1vrp:B (2.1) BS03 IOM 2.7.3.2 GO:0003824 ... P04414 12437342
    58523 1vrq:A (2.2) BS01 NAD 1.5.3.24 GO:0005737 ... Q50LF0 15946648
    58524 1vrq:A (2.2) BS02 FON 1.5.3.24 GO:0005737 ... Q50LF0 15946648
    58525 1vrq:A (2.2) BS03 FMN 1.5.3.24 GO:0005737 ... Q50LF0 15946648
    58526 1vrq:B (2.2) BS01 FAD 1.5.3.24 GO:0005737 ... Q50LF2 15946648
    58527 1vrq:B (2.2) BS02 FMN 1.5.3.24 GO:0005737 ... Q50LF2 15946648
    58528 1vrq:B (2.2) BS03 DMG 1.5.3.24 GO:0005737 ... Q50LF2 15946648
    58529 1vrq:D (2.2) BS01 ZN 1.5.3.24 GO:0005737 ... Q50LF1 15946648
    58530 1vrr:A (2.7) BS01 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    58531 1vrr:A (2.7) BS02 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    58532 1vrr:B (2.7) BS01 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    58533 1vrr:B (2.7) BS02 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    58534 1vru:A (2.4) BS01 AAP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 7540934 MOAD: ic50=0.1uM
    58535 1vrw:A (2.4) BS01 NAI 1.3.1.9 GO:0004318 ... Q9BH77 11792710
    58536 1vrw:B (2.4) BS01 NAI 1.3.1.9 GO:0004318 ... Q9BH77 11792710
    58537 1vs0:A (2.4) BS01 ZN 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    58538 1vs0:A (2.4) BS02 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    58539 1vs0:A (2.4) BS03 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    58540 1vs0:B (2.4) BS01 ZN 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    58541 1vs0:B (2.4) BS02 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    58542 1vs0:B (2.4) BS03 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    58543 1vs1:A (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    58544 1vs1:A (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    58545 1vs1:B (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    58546 1vs1:B (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    58547 1vs1:C (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    58548 1vs1:C (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    58549 1vs1:D (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    58550 1vs1:D (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    58551 1vsd:A (1.7) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 8805516
    58552 1vsf:A (2.05) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 8805516
    58553 1vsh:A (1.95) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    58554 1vsh:A (1.95) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    58555 1vsh:A (1.95) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    58556 1vsi:A (2.2) BS01 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    58557 1vsj:A (2.1) BS01 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    58558 1vsj:A (2.1) BS02 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    58559 1vsn:A (2.0) BS01 NFT 3.4.22.38 GO:0006508 ... P43235 16413777
    58560 1vso:A (1.85) BS01 AT1 ? GO:0015276 ... P22756 17581823 MOAD: Ki=18980nM
    BindingDB: Ki=2900nM
    58561 1vsr:A (1.8) BS01 ZN 3.1.-.- GO:0004519 ... P09184 10360178
    58562 1vst:A (2.8) BS01 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    58563 1vst:A (2.8) BS02 PRP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    58564 1vsv:A (2.0) BS01 NAD 1.2.1.12 GO:0004365 ... Q7YYQ9 19243605
    58565 1vsv:B (2.0) BS01 NAD 1.2.1.12 GO:0004365 ... Q7YYQ9 19243605
    58566 1vsv:C (2.0) BS01 NAD 1.2.1.12 GO:0004365 ... Q7YYQ9 19243605
    58567 1vsv:D (2.0) BS01 NAD 1.2.1.12 GO:0004365 ... Q7YYQ9 19243605
    58568 1vtk:A (2.75) BS01 ADP 2.7.1.21 GO:0000166 ... P0DTH5 9336833
    58569 1vtk:A (2.75) BS02 TMP 2.7.1.21 GO:0000166 ... P0DTH5 9336833
    58570 1vtl:E (2.25) BS01 dna ? GO:0003677 ... P28147 8413605
    58571 1vtl:E (2.25) BS02 dna ? GO:0003677 ... P28147 8413605
    58572 1vtl:F (2.25) BS01 dna ? GO:0003677 ... P28147 8413605
    58573 1vtl:F (2.25) BS02 dna ? GO:0003677 ... P28147 8413605
    58574 1vtm:P (3.5) BS01 rna ? GO:0019028 ... P03579 1453461
    58575 1vtn:C (2.5) BS01 dna ? GO:0003700 ... P55318 8332212
    58576 1vtn:C (2.5) BS02 dna ? GO:0003700 ... P55318 8332212
    58577 1vtn:C (2.5) BS03 MG ? GO:0003700 ... P55318 8332212
    58578 1vto:A (1.9) BS01 dna ? GO:0003677 ... P28147 7634103
    58579 1vto:A (1.9) BS02 dna ? GO:0003677 ... P28147 7634103
    58580 1vto:B (1.9) BS01 dna ? GO:0003677 ... P28147 7634103
    58581 1vto:B (1.9) BS02 dna ? GO:0003677 ... P28147 7634103
    58582 1vvj:QB (3.44) BS01 rna ? GO:0003735 ... P80371 25128388
    58583 1vvj:QC (3.44) BS01 rna ? GO:0003676 ... P80372 25128388
    58584 1vvj:QD (3.44) BS01 rna ? GO:0003723 ... P80373 25128388
    58585 1vvj:QD (3.44) BS02 ZN ? GO:0003723 ... P80373 25128388
    58586 1vvj:QE (3.44) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    58587 1vvj:QF (3.44) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    58588 1vvj:QF (3.44) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    58589 1vvj:QG (3.44) BS01 rna ? GO:0000049 ... P17291 25128388
    58590 1vvj:QH (3.44) BS01 rna N/A GO:0003735 ... P0DOY9 25128388
    58591 1vvj:QH (3.44) BS02 MG N/A GO:0003735 ... P0DOY9 25128388
    58592 1vvj:QI (3.44) BS01 rna ? GO:0003723 ... P80374 25128388
    58593 1vvj:QI (3.44) BS02 rna ? GO:0003723 ... P80374 25128388
    58594 1vvj:QJ (3.44) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    58595 1vvj:QK (3.44) BS01 rna ? GO:0003735 ... P80376 25128388
    58596 1vvj:QL (3.44) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    58597 1vvj:QM (3.44) BS01 rna ? GO:0000049 ... P80377 25128388
    58598 1vvj:QM (3.44) BS02 rna ? GO:0000049 ... P80377 25128388
    58599 1vvj:QM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    58600 1vvj:QN (3.44) BS01 rna N/A GO:0003735 ... P0DOY6 25128388

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).